Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018987

Physical Location & Seq

Genomic Coordinates Forward (+)

66023810 .. 66027123

Gene Structure 3314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCTGCACTTCGTCATCGCCGCTATGTTCAAGAGGAAGCTCAGAGAGCCCAAGGGGAAGAATGTCACTCTTGGACCTGCTGTCCATGATGGAGAGTATGTTACATTAATTTTGGCTGGTGTTCTCCTTCACTACTCTATTTCACCCAAAGGTAAAGGTGGATTGTGTTGTGCTGGGATATTAGCTAGGTACCAGCAAGATGTTCTTGTCTTAGAGAGTCATGATCTACCTGGCGGTGCTGCTCATTCATTTGAGATTAAAGGATTTCAATTTGACTCCGGCCCATCTTTGTTCTCTGGTTTTCAATTAAAAGGCCCTCAGGCCAATCCTCTTAGACAATTTCTTGCCATCAATACCATTGATCAAGCTTGCAGCATGACCAAAATGGATAAAAACAGTATAAAGTGCTATGTCAGACTCAAAATCATTGTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amino_oxidase NAD_binding_8

Protein Analysis

145

Amino Acids

15.88

Weight (kDa)

9.25

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_8	PF13450	52 - 101	1.3e-10	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	54 - 112	7.7e-07	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018987)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0485591
rosa_laevigata	RLG00000029051
rosa_multiflora	Rmu_co8142194.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046670
rosa_samantha	Rh2AG225500 Rh2DG232900 Rh3AG268600 Rh4DG181500 Rh5AG268200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	85
Acc65I	GGTACC	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	189
AciI	CCGC	2 cut(s)	21, 234
AfaI	GTAC	1 cut(s)	191
AgsI	TTSAA	3 cut(s)	31, 269, 305
AhdI	GACNNNNNGTC	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	3 cut(s)	40, 185, 368
AluI	AGCT	3 cut(s)	40, 185, 368
AoxI	GGCC	3 cut(s)	280, 313, 321
ApeKI	GCWGC	3 cut(s)	4, 239, 372
AseI	ATTAAT	1 cut(s)	107
Asp718I	GGTACC	1 cut(s)	189
AspS9I	GGNCC	3 cut(s)	74, 281, 314
AsuHPI	GGTGA	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	74
AxyI	CCTNAGG	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	226, 384
BccI	CCATC	3 cut(s)	83, 292, 356
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	1 cut(s)	361
BfaI	CTAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	4 cut(s)	5, 21, 240, 373
BlsI	GCNGC	4 cut(s)	6, 22, 241, 374
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	74
BmeRI	GACNNNNNGTC	1 cut(s)	80
BmgT120I	GGNCC	3 cut(s)	74, 281, 314
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bse21I	CCTNAGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	55, 332
BseXI	GCAGC	2 cut(s)	226, 384
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	3 cut(s)	282, 315, 323
BshNI	GGYRCC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	279
BsnI	GGCC	3 cut(s)	282, 315, 323
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	223, 361
BspACI	CCGC	2 cut(s)	21, 234
BspANI	GGCC	3 cut(s)	282, 315, 323
BspCNI	CTCAG	2 cut(s)	54, 331
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	191
BspMI	ACCTGC	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	223, 361
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	4 cut(s)	41, 211, 318, 332
BstKTI	GATC	2 cut(s)	226, 364
BstMBI	GATC	2 cut(s)	223, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	226, 384
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	282, 315, 323
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	370
CciI	TCATGA	1 cut(s)	220
Cfr13I	GGNCC	3 cut(s)	74, 281, 314
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	3 cut(s)	86, 221, 376
CviJI	RGCY	8 cut(s)	40, 49, 116, 185, 282, 315, 323, 368
CviKI_1	RGCY	8 cut(s)	40, 49, 116, 185, 282, 315, 323, 368
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	4 cut(s)	41, 211, 318, 332
DpnI	GATC	2 cut(s)	225, 363
DpnII	GATC	2 cut(s)	223, 361
DriI	GACNNNNNGTC	1 cut(s)	80
Eam1105I	GACNNNNNGTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	74
Eco81I	CCTNAGG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	3 cut(s)	89, 224, 379
FaiI	YATR	7 cut(s)	26, 87, 99, 222, 377, 401, 411
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	3 cut(s)	85, 220, 375
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	4 cut(s)	5, 21, 240, 373
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	4 cut(s)	5, 21, 240, 373
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	4 cut(s)	5, 21, 240, 373
GsaI	CCCAGC	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	282, 315, 323
HapII	CCGG	1 cut(s)	279
Hin1II	CATG	3 cut(s)	89, 224, 379
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	3 cut(s)	217, 275, 417
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	135
Hpy188I	TCNGA	2 cut(s)	44, 416
Hpy188III	TCNNGA	2 cut(s)	31, 221
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4V	TGCA	2 cut(s)	7, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	4 cut(s)	41, 211, 318, 332
Hsp92II	CATG	3 cut(s)	89, 224, 379
KpnI	GGTACC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	223, 361
LpnPI	CCDG	9 cut(s)	90, 102, 159, 206, 216, 243, 282, 292, 305
Lsp1109I	GCAGC	2 cut(s)	226, 384
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	64, 100
MalI	GATC	2 cut(s)	225, 363
MboI	GATC	2 cut(s)	223, 361
MboII	GAAGA	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	4 cut(s)	108, 269, 305, 338
MlyI	GAGTC	3 cut(s)	226, 269, 411
MnlI	CCTC	3 cut(s)	27, 327, 339
MseI	TTAA	3 cut(s)	107, 258, 308
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeII	GATC	2 cut(s)	223, 361
NlaIII	CATG	3 cut(s)	89, 224, 379
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	64
PagI	TCATGA	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	6, 22, 241, 374
PleI	GAGTC	3 cut(s)	225, 269, 411
PpsI	GAGTC	3 cut(s)	225, 269, 411
PshBI	ATTAAT	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	3 cut(s)	74, 281, 314
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	3 cut(s)	107, 258, 308
SatI	GCNGC	4 cut(s)	5, 21, 240, 373
Sau3AI	GATC	2 cut(s)	223, 361
Sau96I	GGNCC	3 cut(s)	74, 281, 314
SchI	GAGTC	3 cut(s)	226, 269, 411
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	8 cut(s)	42, 79, 154, 160, 187, 191, 232, 370
SinI	GGWCC	1 cut(s)	74
Sse9I	AATT	4 cut(s)	108, 269, 305, 338
SsiI	CCGC	2 cut(s)	21, 234
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	398
TasI	AATT	4 cut(s)	108, 269, 305, 338
TauI	GCSGC	1 cut(s)	23
Tru1I	TTAA	3 cut(s)	107, 258, 308
Tru9I	TTAA	3 cut(s)	107, 258, 308
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	3 cut(s)	4, 239, 372
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	74
VspI	ATTAAT	1 cut(s)	107
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.