SNF2 domain-containing protein CLASSY
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0330471 |
| rosa_laevigata | RLG00000029807 RLG00000029808 |
| rosa_multiflora | Rmu_sc0000815.1_g000008 |
| rosa_samantha | Rh1AG107200 Rh1BG085400 Rh1CG103100 Rh1DG112800 |
| rosa_wichuraiana | Rw1G008900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 419 |
| AccI | GTMKAC | 1 cut(s) | 207 |
| AciI | CCGC | 1 cut(s) | 742 |
| AclWI | GGATC | 1 cut(s) | 644 |
| AcsI | RAATTY | 3 cut(s) | 140, 185, 248 |
| AcuI | CTGAAG | 2 cut(s) | 439, 594 |
| AfaI | GTAC | 1 cut(s) | 571 |
| AjnI | CCWGG | 1 cut(s) | 405 |
| AluBI | AGCT | 2 cut(s) | 14, 266 |
| AluI | AGCT | 2 cut(s) | 14, 266 |
| Alw26I | GTCTC | 1 cut(s) | 276 |
| AlwI | GGATC | 1 cut(s) | 644 |
| AoxI | GGCC | 1 cut(s) | 389 |
| ApeKI | GCWGC | 4 cut(s) | 14, 266, 332, 509 |
| ApoI | RAATTY | 3 cut(s) | 140, 185, 248 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 452 |
| AsuHPI | GGTGA | 2 cut(s) | 389, 472 |
| AsuII | TTCGAA | 1 cut(s) | 632 |
| BbvI | GCAGC | 3 cut(s) | 253, 344, 496 |
| BccI | CCATC | 2 cut(s) | 436, 598 |
| BceAI | ACGGC | 1 cut(s) | 629 |
| BciT130I | CCWGG | 1 cut(s) | 407 |
| BcoDI | GTCTC | 1 cut(s) | 276 |
| BfmI | CTRYAG | 1 cut(s) | 42 |
| BisI | GCNGC | 5 cut(s) | 15, 267, 333, 510, 742 |
| BlsI | GCNGC | 5 cut(s) | 16, 268, 334, 511, 743 |
| BmcAI | AGTACT | 1 cut(s) | 571 |
| Bme1390I | CCNGG | 1 cut(s) | 407 |
| BmiI | GGNNCC | 1 cut(s) | 467 |
| BmrFI | CCNGG | 1 cut(s) | 407 |
| BmsI | GCATC | 4 cut(s) | 344, 523, 586, 753 |
| BpmI | CTGGAG | 2 cut(s) | 107, 312 |
| Bpu14I | TTCGAA | 1 cut(s) | 632 |
| BsaJI | CCNNGG | 1 cut(s) | 126 |
| Bse3DI | GCAATG | 1 cut(s) | 338 |
| BseBI | CCWGG | 1 cut(s) | 407 |
| BseDI | CCNNGG | 1 cut(s) | 126 |
| BseGI | GGATG | 2 cut(s) | 609, 727 |
| BseMI | GCAATG | 1 cut(s) | 338 |
| BseXI | GCAGC | 3 cut(s) | 253, 344, 496 |
| BshFI | GGCC | 1 cut(s) | 391 |
| BslFI | GGGAC | 1 cut(s) | 314 |
| BsmAI | GTCTC | 1 cut(s) | 276 |
| BsmBI | CGTCTC | 1 cut(s) | 276 |
| BsmFI | GGGAC | 1 cut(s) | 314 |
| BsmI | GAATGC | 1 cut(s) | 703 |
| BsnI | GGCC | 1 cut(s) | 391 |
| Bsp119I | TTCGAA | 1 cut(s) | 632 |
| Bsp143I | GATC | 3 cut(s) | 382, 649, 724 |
| BspACI | CCGC | 1 cut(s) | 742 |
| BspANI | GGCC | 1 cut(s) | 391 |
| BspLI | GGNNCC | 1 cut(s) | 467 |
| BspMAI | CTGCAG | 1 cut(s) | 46 |
| BspPI | GGATC | 1 cut(s) | 644 |
| BspT104I | TTCGAA | 1 cut(s) | 632 |
| BsrDI | GCAATG | 1 cut(s) | 338 |
| BssECI | CCNNGG | 1 cut(s) | 126 |
| BssMI | GATC | 3 cut(s) | 382, 649, 724 |
| BssNAI | GTATAC | 1 cut(s) | 208 |
| BssT1I | CCWWGG | 1 cut(s) | 126 |
| Bst1107I | GTATAC | 1 cut(s) | 208 |
| Bst2UI | CCWGG | 1 cut(s) | 407 |
| Bst4CI | ACNGT | 5 cut(s) | 59, 205, 470, 692, 698 |
| Bst6I | CTCTTC | 2 cut(s) | 17, 210 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 506 |
| BstBI | TTCGAA | 1 cut(s) | 632 |
| BstF5I | GGATG | 2 cut(s) | 609, 727 |
| BstKTI | GATC | 3 cut(s) | 385, 652, 727 |
| BstMAI | GTCTC | 1 cut(s) | 276 |
| BstMBI | GATC | 3 cut(s) | 382, 649, 724 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 275, 332, 506 |
| BstNI | CCWGG | 1 cut(s) | 407 |
| BstNSI | RCATGY | 1 cut(s) | 258 |
| BstSCI | CCNGG | 1 cut(s) | 405 |
| BstSFI | CTRYAG | 1 cut(s) | 42 |
| BstV1I | GCAGC | 3 cut(s) | 253, 344, 496 |
| BstX2I | RGATCY | 1 cut(s) | 649 |
| BstYI | RGATCY | 1 cut(s) | 649 |
| BstZ17I | GTATAC | 1 cut(s) | 208 |
| BsuRI | GGCC | 1 cut(s) | 391 |
| BtsCI | GGATG | 2 cut(s) | 609, 727 |
| BtsIMutI | CAGTG | 1 cut(s) | 64 |
| CseI | GACGC | 1 cut(s) | 258 |
| Csp6I | GTAC | 1 cut(s) | 570 |
| CviAII | CATG | 4 cut(s) | 133, 255, 374, 600 |
| CviJI | RGCY | 4 cut(s) | 14, 242, 266, 391 |
| CviKI_1 | RGCY | 4 cut(s) | 14, 242, 266, 391 |
| CviQI | GTAC | 1 cut(s) | 570 |
| DpnI | GATC | 3 cut(s) | 384, 651, 726 |
| DpnII | GATC | 3 cut(s) | 382, 649, 724 |
| Eam1104I | CTCTTC | 2 cut(s) | 17, 210 |
| EarI | CTCTTC | 2 cut(s) | 17, 210 |
| Eco130I | CCWWGG | 1 cut(s) | 126 |
| Eco147I | AGGCCT | 1 cut(s) | 391 |
| Eco57I | CTGAAG | 2 cut(s) | 439, 594 |
| EcoRII | CCWGG | 1 cut(s) | 405 |
| EcoT14I | CCWWGG | 1 cut(s) | 126 |
| EcoT22I | ATGCAT | 1 cut(s) | 601 |
| ErhI | CCWWGG | 1 cut(s) | 126 |
| Esp3I | CGTCTC | 1 cut(s) | 276 |
| FaeI | CATG | 4 cut(s) | 136, 258, 377, 603 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 379, 411 |
| FaqI | GGGAC | 1 cut(s) | 314 |
| FatI | CATG | 4 cut(s) | 132, 254, 373, 599 |
| FblI | GTMKAC | 1 cut(s) | 207 |
| Fnu4HI | GCNGC | 5 cut(s) | 15, 267, 333, 510, 742 |
| FokI | GGATG | 2 cut(s) | 616, 734 |
| Fsp4HI | GCNGC | 5 cut(s) | 15, 267, 333, 510, 742 |
| GluI | GCNGC | 5 cut(s) | 15, 267, 333, 510, 742 |
| GsuI | CTGGAG | 2 cut(s) | 107, 312 |
| HaeIII | GGCC | 1 cut(s) | 391 |
| HgaI | GACGC | 1 cut(s) | 258 |
| Hin1II | CATG | 4 cut(s) | 136, 258, 377, 603 |
| HincII | GTYRAC | 1 cut(s) | 260 |
| HindII | GTYRAC | 1 cut(s) | 260 |
| HinfI | GANTC | 3 cut(s) | 232, 359, 626 |
| HphI | GGTGA | 2 cut(s) | 389, 472 |
| Hpy166II | GTNNAC | 2 cut(s) | 208, 260 |
| Hpy188I | TCNGA | 3 cut(s) | 364, 433, 661 |
| Hpy188III | TCNNGA | 1 cut(s) | 445 |
| Hpy8I | GTNNAC | 2 cut(s) | 208, 260 |
| HpyAV | CCTTC | 6 cut(s) | 130, 402, 442, 628, 663, 671 |
| HpyCH4III | ACNGT | 5 cut(s) | 59, 205, 470, 692, 698 |
| HpyCH4IV | ACGT | 1 cut(s) | 517 |
| HpyCH4V | TGCA | 5 cut(s) | 17, 44, 182, 254, 599 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 275, 332, 506 |
| HpySE526I | ACGT | 1 cut(s) | 517 |
| Hsp92II | CATG | 4 cut(s) | 136, 258, 377, 603 |
| Kzo9I | GATC | 3 cut(s) | 382, 649, 724 |
| LmnI | GCTCC | 1 cut(s) | 331 |
| Lsp1109I | GCAGC | 3 cut(s) | 253, 344, 496 |
| LweI | GCATC | 4 cut(s) | 344, 523, 586, 753 |
| MaeII | ACGT | 1 cut(s) | 517 |
| MaeIII | GTNAC | 2 cut(s) | 59, 692 |
| MalI | GATC | 3 cut(s) | 384, 651, 726 |
| MboI | GATC | 3 cut(s) | 382, 649, 724 |
| MboII | GAAGA | 7 cut(s) | 34, 227, 392, 569, 587, 590, 621 |
| MflI | RGATCY | 1 cut(s) | 649 |
| MluCI | AATT | 3 cut(s) | 140, 185, 248 |
| MlyI | GAGTC | 1 cut(s) | 241 |
| MnlI | CCTC | 6 cut(s) | 18, 211, 361, 403, 456, 679 |
| Mph1103I | ATGCAT | 1 cut(s) | 601 |
| MroXI | GAANNNNTTC | 1 cut(s) | 452 |
| MseI | TTAA | 1 cut(s) | 716 |
| MspR9I | CCNGG | 1 cut(s) | 407 |
| Mva1269I | GAATGC | 1 cut(s) | 703 |
| MvaI | CCWGG | 1 cut(s) | 407 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 275, 332, 506 |
| NdeII | GATC | 3 cut(s) | 382, 649, 724 |
| NlaIII | CATG | 4 cut(s) | 136, 258, 377, 603 |
| NlaIV | GGNNCC | 1 cut(s) | 467 |
| NmuCI | GTSAC | 2 cut(s) | 59, 692 |
| NsiI | ATGCAT | 1 cut(s) | 601 |
| NspI | RCATGY | 1 cut(s) | 258 |
| NspV | TTCGAA | 1 cut(s) | 632 |
| PceI | AGGCCT | 1 cut(s) | 391 |
| PctI | GAATGC | 1 cut(s) | 703 |
| PdmI | GAANNNNTTC | 1 cut(s) | 452 |
| PfeI | GAWTC | 2 cut(s) | 359, 626 |
| PfoI | TCCNGGA | 1 cut(s) | 405 |
| PkrI | GCNGC | 5 cut(s) | 16, 268, 334, 511, 743 |
| PleI | GAGTC | 1 cut(s) | 240 |
| PpsI | GAGTC | 1 cut(s) | 240 |
| PsiI | TTATAA | 1 cut(s) | 419 |
| Psp6I | CCWGG | 1 cut(s) | 405 |
| PspGI | CCWGG | 1 cut(s) | 405 |
| PspN4I | GGNNCC | 1 cut(s) | 467 |
| PstI | CTGCAG | 1 cut(s) | 46 |
| PsuI | RGATCY | 1 cut(s) | 649 |
| RsaI | GTAC | 1 cut(s) | 571 |
| RsaNI | GTAC | 1 cut(s) | 570 |
| SaqAI | TTAA | 1 cut(s) | 716 |
| SatI | GCNGC | 5 cut(s) | 15, 267, 333, 510, 742 |
| Sau3AI | GATC | 3 cut(s) | 382, 649, 724 |
| ScaI | AGTACT | 1 cut(s) | 571 |
| SchI | GAGTC | 1 cut(s) | 241 |
| ScrFI | CCNGG | 1 cut(s) | 407 |
| SetI | ASST | 7 cut(s) | 16, 29, 34, 268, 414, 520, 682 |
| SfaNI | GCATC | 4 cut(s) | 344, 523, 586, 753 |
| SfcI | CTRYAG | 1 cut(s) | 42 |
| SfuI | TTCGAA | 1 cut(s) | 632 |
| Sse9I | AATT | 3 cut(s) | 140, 185, 248 |
| SseBI | AGGCCT | 1 cut(s) | 391 |
| SsiI | CCGC | 1 cut(s) | 742 |
| StuI | AGGCCT | 1 cut(s) | 391 |
| StyD4I | CCNGG | 1 cut(s) | 405 |
| StyI | CCWWGG | 1 cut(s) | 126 |
| TaaI | ACNGT | 5 cut(s) | 59, 205, 470, 692, 698 |
| TaiI | ACGT | 1 cut(s) | 520 |
| TaqI | TCGA | 2 cut(s) | 235, 632 |
| TasI | AATT | 3 cut(s) | 140, 185, 248 |
| TatI | WGTACW | 1 cut(s) | 569 |
| TauI | GCSGC | 1 cut(s) | 744 |
| TfiI | GAWTC | 2 cut(s) | 359, 626 |
| Tru1I | TTAA | 1 cut(s) | 716 |
| Tru9I | TTAA | 1 cut(s) | 716 |
| TscAI | CASTG | 1 cut(s) | 64 |
| TseFI | GTSAC | 2 cut(s) | 59, 692 |
| TseI | GCWGC | 4 cut(s) | 14, 266, 332, 509 |
| Tsp45I | GTSAC | 2 cut(s) | 59, 692 |
| TspDTI | ATGAA | 1 cut(s) | 149 |
| TspRI | CASTG | 1 cut(s) | 64 |
| XapI | RAATTY | 3 cut(s) | 140, 185, 248 |
| XceI | RCATGY | 1 cut(s) | 258 |
| XmiI | GTMKAC | 1 cut(s) | 207 |
| XmnI | GAANNNNTTC | 1 cut(s) | 452 |
| ZrmI | AGTACT | 1 cut(s) | 571 |
| Zsp2I | ATGCAT | 1 cut(s) | 601 |