Rh1BG085400

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018957
Physical Location & Seq
Reverse (-)
13445497 .. 13449596
4100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG085400.1

Sequence Viewer

Length: 1149 bp
ATGATGTGCAATAAGTCTGGAGCTGCCTCAGTTGCAAGATCTGATCCTTCGTGCGCGTGTGTATGTCTGGCGCAAAATAATGTAATTGATTTGGACAATGATTTTCTTGGTAATAATGCTCCAGCAGCATCATTGCCTATTGTGATTATTGATTCAGATGAGGAACATGCTGAAGATCAAAGGCCTTCTTACTCTTTCCAGGATGTTTTTATGACACAACCATCTGAACAAGTGTTCAGGAAGGACTTCAGCGTGAGGAACCGTGATGAGAACAAAGTTTCAGTAGGAGAAGCAAGTCCTTCTGCTAAAAGTGAACACAATAAAGATGCAGGGATGTTGCCGTACGTAGATCCTTCATCTGAACAAAAGACAAGCGAAGGTGGGGAGGACTGTGACTGTGAGCATTCTTTTCTCTTAAAGGATGATCTTGGATATGTTTGCCGTATCTGTGGGGTTATTGAAAGAGGAATTGATATGATATTCGAGTTTCACTATAACAAGGTCAAAAAGAGTACAAGAACTTGTATGCCTGATTCTCGGAATGCCAAAGACAGAGATTTGACTGAGGTGGGAGGTGTTAAACTTTCAGAGGATGGTTTGATAGTAACTGAAATATCTGCACACCCAAGACATATGAAGCAAATGAAACCTCATCAAGTGGAGGGTTTCAATTTTCTTGTTAGCAACTTGGTCGGTGATAACCCTCGCGGTTGCATCTTGGCCCATGCCCCAGGATCAGGCAAAACATTCATGATAATCAGTTTCATGCAAAGTTACCTCGCTGAGACCCAAATGCTAGACTACTGGTTGTTCCACCCAAAGGAATCTTGGATACATGGAAAAAGGAGTTTAAATATTGGCAAGTGGAGGATATTCCATTATTTGATTTGTACAAGTCCACAAGGCAGACAATCGATCACAACAGCTGGAGGTTTTGAAGAAGTGGGTCGATCAGAAGAGTATCCTCTTCTTAGGTTTCTAAGATCAAATACTTCCCAACCCATCATCAAGCGCATGATGAGTAGAGTACTTATACCAGGTGCAAGGAAGCAGTTCAAAGCTGGTGGTGATAGCTTCCATGATCTAGTGGAGGATACTCTCCAAAAGGATAAGGATTTTAGAAGGAAGGTGACTGTCATACATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

382

Amino Acids

42.97

Weight (kDa)

6.13

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018957)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330471
rosa_laevigata RLG00000029807 RLG00000029808
rosa_multiflora Rmu_sc0000815.1_g000008
rosa_samantha Rh1AG107200 Rh1BG085400 Rh1CG103100 Rh1DG112800
rosa_wichuraiana Rw1G008900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 56, 708
AciI CCGC 1 cut(s) 708
AclWI GGATC 3 cut(s) 38, 344, 742
AcuI CTGAAG 2 cut(s) 192, 232
AfaI GTAC 4 cut(s) 344, 514, 892, 1029
AfiI CCNNNNNNNGG 2 cut(s) 737, 820
AgsI TTSAA 4 cut(s) 461, 670, 938, 1057
AjnI CCWGG 3 cut(s) 198, 730, 1036
AluBI AGCT 4 cut(s) 23, 926, 1061, 1074
AluI AGCT 4 cut(s) 23, 926, 1061, 1074
Alw26I GTCTC 1 cut(s) 779
AlwI GGATC 3 cut(s) 38, 344, 742
AoxI GGCC 2 cut(s) 182, 720
ApeKI GCWGC 2 cut(s) 23, 125
Asp700I GAANNNNTTC 2 cut(s) 245, 1052
AspLEI GCGC 3 cut(s) 56, 73, 1014
AspS9I GGNCC 1 cut(s) 721
AsuHPI GGTGA 3 cut(s) 707, 1079, 1141
BbvI GCAGC 2 cut(s) 10, 137
BccI CCATC 3 cut(s) 229, 587, 1010
BceAI ACGGC 2 cut(s) 325, 426
BcgI CGANNNNNNTGC 2 cut(s) 673, 707
BciT130I CCWGG 3 cut(s) 200, 732, 1038
BciVI GTATCC 3 cut(s) 825, 972, 1087
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 3 cut(s) 797, 1085, 1147
BfuI GTATCC 3 cut(s) 825, 972, 1087
BglII AGATCT 1 cut(s) 38
BisI GCNGC 2 cut(s) 24, 126
BlsI GCNGC 2 cut(s) 25, 127
BmcAI AGTACT 1 cut(s) 1029
Bme1390I CCNGG 3 cut(s) 200, 732, 1038
BmgT120I GGNCC 1 cut(s) 721
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 3 cut(s) 200, 732, 1038
BmsI GCATC 3 cut(s) 137, 316, 723
BpmI CTGGAG 3 cut(s) 39, 105, 948
Bsa29I ATCGAT 1 cut(s) 914
BsaAI YACGTR 1 cut(s) 346
BsaI GGTCTC 1 cut(s) 779
BsaJI CCNNGG 1 cut(s) 730
Bsc4I CCNNNNNNNGG 2 cut(s) 737, 820
Bse1I ACTGG 1 cut(s) 809
Bse3DI GCAATG 1 cut(s) 131
BseBI CCWGG 3 cut(s) 200, 732, 1038
BseCI ATCGAT 1 cut(s) 914
BseDI CCNNGG 1 cut(s) 730
BseGI GGATG 4 cut(s) 208, 339, 427, 598
BseLI CCNNNNNNNGG 2 cut(s) 737, 820
BseMI GCAATG 1 cut(s) 131
BseMII CTCAG 3 cut(s) 42, 555, 774
BseNI ACTGG 1 cut(s) 809
BseXI GCAGC 2 cut(s) 10, 137
BsgI GTGCAG 1 cut(s) 603
Bsh1236I CGCG 2 cut(s) 56, 708
BshFI GGCC 2 cut(s) 184, 722
BshVI ATCGAT 1 cut(s) 914
BsiWI CGTACG 1 cut(s) 342
BslI CCNNNNNNNGG 2 cut(s) 737, 820
BsmAI GTCTC 1 cut(s) 779
BsmI GAATGC 2 cut(s) 403, 547
BsnI GGCC 2 cut(s) 184, 722
Bso31I GGTCTC 1 cut(s) 779
Bsp1407I TGTACA 1 cut(s) 890
BspACI CCGC 1 cut(s) 708
BspANI GGCC 2 cut(s) 184, 722
BspCNI CTCAG 3 cut(s) 41, 556, 775
BspDI ATCGAT 1 cut(s) 914
BspFNI CGCG 2 cut(s) 56, 708
BspHI TCATGA 1 cut(s) 750
BspLI GGNNCC 1 cut(s) 260
BspPI GGATC 3 cut(s) 38, 344, 742
BspTNI GGTCTC 1 cut(s) 779
BsrDI GCAATG 1 cut(s) 131
BsrGI TGTACA 1 cut(s) 890
BsrI ACTGG 1 cut(s) 809
BssECI CCNNGG 1 cut(s) 730
Bst2UI CCWGG 3 cut(s) 200, 732, 1038
Bst4CI ACNGT 4 cut(s) 263, 392, 398, 1135
Bst6I CTCTTC 2 cut(s) 951, 972
BstAUI TGTACA 1 cut(s) 890
BstBAI YACGTR 1 cut(s) 346
BstDEI CTNAG 5 cut(s) 28, 564, 783, 971, 980
BstF5I GGATG 4 cut(s) 208, 339, 427, 598
BstFNI CGCG 2 cut(s) 56, 708
BstHHI GCGC 3 cut(s) 56, 73, 1014
BstMAI GTCTC 1 cut(s) 779
BstMWI GCNNNNNNNGC 2 cut(s) 32, 125
BstNI CCWGG 3 cut(s) 200, 732, 1038
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 3 cut(s) 198, 730, 1036
BstSNI TACGTA 1 cut(s) 346
BstUI CGCG 2 cut(s) 56, 708
BstV1I GCAGC 2 cut(s) 10, 137
BstX2I RGATCY 2 cut(s) 38, 349
BstYI RGATCY 2 cut(s) 38, 349
Bsu15I ATCGAT 1 cut(s) 914
BsuI GTATCC 3 cut(s) 825, 972, 1087
BsuRI GGCC 2 cut(s) 184, 722
BsuTUI ATCGAT 1 cut(s) 914
BtsCI GGATG 4 cut(s) 208, 339, 427, 598
CciI TCATGA 1 cut(s) 750
CfoI GCGC 3 cut(s) 56, 73, 1014
Cfr13I GGNCC 1 cut(s) 721
ClaI ATCGAT 1 cut(s) 914
CsiI ACCWGGT 1 cut(s) 1036
Csp6I GTAC 4 cut(s) 343, 513, 891, 1028
CspCI CAANNNNNGTGG 2 cut(s) 1045, 1080
CviAII CATG 8 cut(s) 167, 725, 751, 766, 836, 1015, 1079, 1142
CviJI RGCY 6 cut(s) 23, 184, 722, 926, 1061, 1074
CviKI_1 RGCY 6 cut(s) 23, 184, 722, 926, 1061, 1074
CviQI GTAC 4 cut(s) 343, 513, 891, 1028
DdeI CTNAG 5 cut(s) 28, 564, 783, 971, 980
DraI TTTAAA 1 cut(s) 852
Eam1104I CTCTTC 2 cut(s) 951, 972
EarI CTCTTC 2 cut(s) 951, 972
Eco105I TACGTA 1 cut(s) 346
Eco147I AGGCCT 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 779
Eco57I CTGAAG 2 cut(s) 192, 232
EcoRII CCWGG 3 cut(s) 198, 730, 1036
FaeI CATG 8 cut(s) 170, 728, 754, 769, 839, 1018, 1082, 1145
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FatI CATG 8 cut(s) 166, 724, 750, 765, 835, 1014, 1078, 1141
FauNDI CATATG 1 cut(s) 633
Fnu4HI GCNGC 2 cut(s) 24, 126
FokI GGATG 4 cut(s) 215, 346, 434, 605
Fsp4HI GCNGC 2 cut(s) 24, 126
FspBI CTAG 3 cut(s) 797, 1085, 1147
GlaI GCGC 3 cut(s) 55, 72, 1013
GluI GCNGC 2 cut(s) 24, 126
GsuI CTGGAG 3 cut(s) 39, 105, 948
HaeIII GGCC 2 cut(s) 184, 722
HhaI GCGC 3 cut(s) 56, 73, 1014
Hin1II CATG 8 cut(s) 170, 728, 754, 769, 839, 1018, 1082, 1145
Hin6I GCGC 3 cut(s) 54, 71, 1012
HinP1I GCGC 3 cut(s) 54, 71, 1012
HinfI GANTC 3 cut(s) 152, 533, 824
HphI GGTGA 3 cut(s) 707, 1079, 1141
Hpy166II GTNNAC 2 cut(s) 314, 899
Hpy188I TCNGA 7 cut(s) 43, 157, 226, 361, 540, 589, 955
Hpy188III TCNNGA 3 cut(s) 18, 238, 751
Hpy8I GTNNAC 2 cut(s) 314, 899
HpyAV CCTTC 8 cut(s) 57, 195, 235, 309, 363, 371, 1116, 1120
HpyCH4III ACNGT 4 cut(s) 263, 392, 398, 1135
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 7 cut(s) 9, 35, 329, 620, 714, 769, 1043
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 125
HpyF3I CTNAG 5 cut(s) 28, 564, 783, 971, 980
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 8 cut(s) 170, 728, 754, 769, 839, 1018, 1082, 1145
HspAI GCGC 3 cut(s) 54, 71, 1012
LmnI GCTCC 2 cut(s) 20, 124
Lsp1109I GCAGC 2 cut(s) 10, 137
LweI GCATC 3 cut(s) 137, 316, 723
MabI ACCWGGT 1 cut(s) 1036
MaeI CTAG 3 cut(s) 797, 1085, 1147
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 4 cut(s) 392, 604, 773, 1129
MboII GAAGA 4 cut(s) 185, 950, 959, 968
MflI RGATCY 2 cut(s) 38, 349
MluCI AATT 3 cut(s) 84, 468, 670
MroXI GAANNNNTTC 2 cut(s) 245, 1052
MseI TTAA 3 cut(s) 416, 579, 851
MspA1I CMGCKG 1 cut(s) 926
MspR9I CCNGG 3 cut(s) 200, 732, 1038
Mva1269I GAATGC 2 cut(s) 403, 547
MvaI CCWGG 3 cut(s) 200, 732, 1038
MvnI CGCG 2 cut(s) 56, 708
MwoI GCNNNNNNNGC 2 cut(s) 32, 125
NdeI CATATG 1 cut(s) 633
NlaIII CATG 8 cut(s) 170, 728, 754, 769, 839, 1018, 1082, 1145
NlaIV GGNNCC 1 cut(s) 260
NmuCI GTSAC 2 cut(s) 392, 1129
NspI RCATGY 1 cut(s) 170
PagI TCATGA 1 cut(s) 750
PceI AGGCCT 1 cut(s) 184
PctI GAATGC 2 cut(s) 403, 547
PdmI GAANNNNTTC 2 cut(s) 245, 1052
PfeI GAWTC 3 cut(s) 152, 533, 824
Pfl23II CGTACG 1 cut(s) 342
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 2 cut(s) 25, 127
Ppu21I YACGTR 1 cut(s) 346
Psp6I CCWGG 3 cut(s) 198, 730, 1036
PspGI CCWGG 3 cut(s) 198, 730, 1036
PspLI CGTACG 1 cut(s) 342
PspN4I GGNNCC 1 cut(s) 260
PspPI GGNCC 1 cut(s) 721
PsuI RGATCY 2 cut(s) 38, 349
PvuII CAGCTG 1 cut(s) 926
RsaI GTAC 4 cut(s) 344, 514, 892, 1029
RsaNI GTAC 4 cut(s) 343, 513, 891, 1028
SaqAI TTAA 3 cut(s) 416, 579, 851
SatI GCNGC 2 cut(s) 24, 126
Sau96I GGNCC 1 cut(s) 721
ScaI AGTACT 1 cut(s) 1029
ScrFI CCNGG 3 cut(s) 200, 732, 1038
SexAI ACCWGGT 1 cut(s) 1036
SfaNI GCATC 3 cut(s) 137, 316, 723
SnaBI TACGTA 1 cut(s) 346
Sse9I AATT 3 cut(s) 84, 468, 670
SseBI AGGCCT 1 cut(s) 184
SsiI CCGC 1 cut(s) 708
SspI AATATT 1 cut(s) 856
SspMI CTAG 3 cut(s) 797, 1085, 1147
StuI AGGCCT 1 cut(s) 184
StyD4I CCNGG 3 cut(s) 198, 730, 1036
TaaI ACNGT 4 cut(s) 263, 392, 398, 1135
TaiI ACGT 1 cut(s) 348
TaqI TCGA 3 cut(s) 483, 914, 949
TasI AATT 3 cut(s) 84, 468, 670
TatI WGTACW 3 cut(s) 512, 890, 1027
TfiI GAWTC 3 cut(s) 152, 533, 824
Tru1I TTAA 3 cut(s) 416, 579, 851
Tru9I TTAA 3 cut(s) 416, 579, 851
TseFI GTSAC 2 cut(s) 392, 1129
TseI GCWGC 2 cut(s) 23, 125
Tsp45I GTSAC 2 cut(s) 392, 1129
TspDTI ATGAA 5 cut(s) 345, 650, 659, 739, 754
XceI RCATGY 1 cut(s) 170
XcmI CCANNNNNNNNNTGG 1 cut(s) 825
XmnI GAANNNNTTC 2 cut(s) 245, 1052
XspI CTAG 3 cut(s) 797, 1085, 1147
ZrmI AGTACT 1 cut(s) 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.