SNF2 domain-containing protein CLASSY
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0330471 |
| rosa_laevigata | RLG00000029807 RLG00000029808 |
| rosa_multiflora | Rmu_sc0000815.1_g000008 |
| rosa_samantha | Rh1AG107200 Rh1BG085400 Rh1CG103100 Rh1DG112800 |
| rosa_wichuraiana | Rw1G008900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 299 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 92 |
| Acc36I | ACCTGC | 1 cut(s) | 299 |
| AccII | CGCG | 1 cut(s) | 780 |
| AciI | CCGC | 2 cut(s) | 514, 780 |
| AclWI | GGATC | 2 cut(s) | 416, 814 |
| AcsI | RAATTY | 2 cut(s) | 10, 162 |
| AcuI | CTGAAG | 2 cut(s) | 223, 366 |
| AfaI | GTAC | 5 cut(s) | 343, 586, 678, 964, 1050 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 809, 892 |
| AgsI | TTSAA | 5 cut(s) | 406, 533, 563, 742, 1010 |
| AjnI | CCWGG | 1 cut(s) | 802 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 135, 167 |
| AluBI | AGCT | 2 cut(s) | 284, 998 |
| AluI | AGCT | 2 cut(s) | 284, 998 |
| Alw26I | GTCTC | 2 cut(s) | 26, 851 |
| AlwI | GGATC | 2 cut(s) | 416, 814 |
| AoxI | GGCC | 2 cut(s) | 139, 792 |
| ApoI | RAATTY | 2 cut(s) | 10, 162 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 165, 236 |
| AspS9I | GGNCC | 1 cut(s) | 793 |
| AsuHPI | GGTGA | 4 cut(s) | 62, 256, 779, 1052 |
| BccI | CCATC | 3 cut(s) | 220, 370, 659 |
| BceAI | ACGGC | 1 cut(s) | 401 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 745, 779 |
| BciT130I | CCWGG | 1 cut(s) | 804 |
| BciVI | GTATCC | 2 cut(s) | 897, 1044 |
| BcoDI | GTCTC | 2 cut(s) | 26, 851 |
| BfaI | CTAG | 1 cut(s) | 869 |
| BfuAI | ACCTGC | 1 cut(s) | 299 |
| BfuI | GTATCC | 2 cut(s) | 897, 1044 |
| BglII | AGATCT | 1 cut(s) | 175 |
| BisI | GCNGC | 1 cut(s) | 514 |
| BlsI | GCNGC | 1 cut(s) | 515 |
| BmcAI | AGTACT | 1 cut(s) | 343 |
| Bme1390I | CCNGG | 1 cut(s) | 804 |
| BmgT120I | GGNCC | 1 cut(s) | 793 |
| BmrFI | CCNGG | 1 cut(s) | 804 |
| BmsI | GCATC | 4 cut(s) | 295, 358, 525, 795 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 37, 69 |
| BpmI | CTGGAG | 1 cut(s) | 1020 |
| Bsa29I | ATCGAT | 1 cut(s) | 986 |
| BsaI | GGTCTC | 1 cut(s) | 851 |
| BsaJI | CCNNGG | 1 cut(s) | 802 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 809, 892 |
| Bse1I | ACTGG | 1 cut(s) | 881 |
| BseBI | CCWGG | 1 cut(s) | 804 |
| BseCI | ATCGAT | 1 cut(s) | 986 |
| BseDI | CCNNGG | 1 cut(s) | 802 |
| BseGI | GGATG | 5 cut(s) | 208, 381, 415, 499, 670 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 809, 892 |
| BseMII | CTCAG | 3 cut(s) | 47, 627, 846 |
| BseNI | ACTGG | 1 cut(s) | 881 |
| BsgI | GTGCAG | 1 cut(s) | 675 |
| Bsh1236I | CGCG | 1 cut(s) | 780 |
| BshFI | GGCC | 2 cut(s) | 141, 794 |
| BshVI | ATCGAT | 1 cut(s) | 986 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 809, 892 |
| BsmAI | GTCTC | 2 cut(s) | 26, 851 |
| BsmI | GAATGC | 2 cut(s) | 475, 619 |
| BsnI | GGCC | 2 cut(s) | 141, 794 |
| Bso31I | GGTCTC | 1 cut(s) | 851 |
| Bsp1407I | TGTACA | 1 cut(s) | 962 |
| Bsp143I | GATC | 5 cut(s) | 175, 421, 496, 806, 987 |
| BspACI | CCGC | 2 cut(s) | 514, 780 |
| BspANI | GGCC | 2 cut(s) | 141, 794 |
| BspCNI | CTCAG | 3 cut(s) | 48, 628, 847 |
| BspDI | ATCGAT | 1 cut(s) | 986 |
| BspFNI | CGCG | 1 cut(s) | 780 |
| BspHI | TCATGA | 1 cut(s) | 822 |
| BspMI | ACCTGC | 1 cut(s) | 299 |
| BspPI | GGATC | 2 cut(s) | 416, 814 |
| BspTNI | GGTCTC | 1 cut(s) | 851 |
| BsrGI | TGTACA | 1 cut(s) | 962 |
| BsrI | ACTGG | 1 cut(s) | 881 |
| BssECI | CCNNGG | 1 cut(s) | 802 |
| BssMI | GATC | 5 cut(s) | 175, 421, 496, 806, 987 |
| Bst2UI | CCWGG | 1 cut(s) | 804 |
| Bst4CI | ACNGT | 4 cut(s) | 254, 464, 470, 1057 |
| Bst6I | CTCTTC | 2 cut(s) | 1023, 1044 |
| BstAUI | TGTACA | 1 cut(s) | 962 |
| BstDEI | CTNAG | 4 cut(s) | 56, 636, 855, 1043 |
| BstF5I | GGATG | 5 cut(s) | 208, 381, 415, 499, 670 |
| BstFNI | CGCG | 1 cut(s) | 780 |
| BstKTI | GATC | 5 cut(s) | 178, 424, 499, 809, 990 |
| BstMAI | GTCTC | 2 cut(s) | 26, 851 |
| BstMBI | GATC | 5 cut(s) | 175, 421, 496, 806, 987 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 138 |
| BstNI | CCWGG | 1 cut(s) | 804 |
| BstSCI | CCNGG | 1 cut(s) | 802 |
| BstUI | CGCG | 1 cut(s) | 780 |
| BstX2I | RGATCY | 2 cut(s) | 175, 421 |
| BstYI | RGATCY | 2 cut(s) | 175, 421 |
| Bsu15I | ATCGAT | 1 cut(s) | 986 |
| BsuI | GTATCC | 2 cut(s) | 897, 1044 |
| BsuRI | GGCC | 2 cut(s) | 141, 794 |
| BsuTUI | ATCGAT | 1 cut(s) | 986 |
| BtsCI | GGATG | 5 cut(s) | 208, 381, 415, 499, 670 |
| BveI | ACCTGC | 1 cut(s) | 299 |
| CciI | TCATGA | 1 cut(s) | 822 |
| Cfr13I | GGNCC | 1 cut(s) | 793 |
| ClaI | ATCGAT | 1 cut(s) | 986 |
| CseI | GACGC | 1 cut(s) | 37 |
| Csp6I | GTAC | 5 cut(s) | 342, 585, 677, 963, 1049 |
| CviAII | CATG | 5 cut(s) | 372, 797, 823, 838, 908 |
| CviJI | RGCY | 5 cut(s) | 100, 141, 284, 794, 998 |
| CviKI_1 | RGCY | 5 cut(s) | 100, 141, 284, 794, 998 |
| CviQI | GTAC | 5 cut(s) | 342, 585, 677, 963, 1049 |
| DdeI | CTNAG | 4 cut(s) | 56, 636, 855, 1043 |
| DpnI | GATC | 5 cut(s) | 177, 423, 498, 808, 989 |
| DpnII | GATC | 5 cut(s) | 175, 421, 496, 806, 987 |
| DraI | TTTAAA | 1 cut(s) | 924 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 92 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 92 |
| Eam1104I | CTCTTC | 2 cut(s) | 1023, 1044 |
| EarI | CTCTTC | 2 cut(s) | 1023, 1044 |
| Eco31I | GGTCTC | 1 cut(s) | 851 |
| Eco57I | CTGAAG | 2 cut(s) | 223, 366 |
| EcoRI | GAATTC | 1 cut(s) | 10 |
| EcoRII | CCWGG | 1 cut(s) | 802 |
| EcoT22I | ATGCAT | 1 cut(s) | 373 |
| FaeI | CATG | 5 cut(s) | 375, 800, 826, 841, 911 |
| FatI | CATG | 5 cut(s) | 371, 796, 822, 837, 907 |
| FauNDI | CATATG | 1 cut(s) | 705 |
| Fnu4HI | GCNGC | 1 cut(s) | 514 |
| FokI | GGATG | 5 cut(s) | 195, 388, 422, 506, 677 |
| Fsp4HI | GCNGC | 1 cut(s) | 514 |
| FspBI | CTAG | 1 cut(s) | 869 |
| GluI | GCNGC | 1 cut(s) | 514 |
| GsuI | CTGGAG | 1 cut(s) | 1020 |
| HaeIII | GGCC | 2 cut(s) | 141, 794 |
| HgaI | GACGC | 1 cut(s) | 37 |
| Hin1II | CATG | 5 cut(s) | 375, 800, 826, 841, 911 |
| HincII | GTYRAC | 1 cut(s) | 183 |
| HindII | GTYRAC | 1 cut(s) | 183 |
| HinfI | GANTC | 3 cut(s) | 398, 605, 896 |
| HphI | GGTGA | 4 cut(s) | 62, 256, 779, 1052 |
| Hpy166II | GTNNAC | 3 cut(s) | 183, 971, 1060 |
| Hpy188III | TCNNGA | 2 cut(s) | 229, 823 |
| Hpy8I | GTNNAC | 3 cut(s) | 183, 971, 1060 |
| HpyAV | CCTTC | 5 cut(s) | 35, 226, 400, 435, 443 |
| HpyCH4III | ACNGT | 4 cut(s) | 254, 464, 470, 1057 |
| HpyCH4V | TGCA | 5 cut(s) | 308, 371, 692, 786, 841 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 138 |
| HpyF3I | CTNAG | 4 cut(s) | 56, 636, 855, 1043 |
| Hsp92II | CATG | 5 cut(s) | 375, 800, 826, 841, 911 |
| Kzo9I | GATC | 5 cut(s) | 175, 421, 496, 806, 987 |
| LweI | GCATC | 4 cut(s) | 295, 358, 525, 795 |
| MaeI | CTAG | 1 cut(s) | 869 |
| MaeIII | GTNAC | 3 cut(s) | 49, 464, 845 |
| MalI | GATC | 5 cut(s) | 177, 423, 498, 808, 989 |
| MboI | GATC | 5 cut(s) | 175, 421, 496, 806, 987 |
| MboII | GAAGA | 7 cut(s) | 143, 341, 359, 362, 1022, 1031, 1040 |
| MflI | RGATCY | 2 cut(s) | 175, 421 |
| MluCI | AATT | 5 cut(s) | 10, 145, 162, 540, 742 |
| Mph1103I | ATGCAT | 1 cut(s) | 373 |
| MroXI | GAANNNNTTC | 2 cut(s) | 165, 236 |
| MseI | TTAA | 3 cut(s) | 488, 651, 923 |
| MspA1I | CMGCKG | 1 cut(s) | 998 |
| MspR9I | CCNGG | 1 cut(s) | 804 |
| Mva1269I | GAATGC | 2 cut(s) | 475, 619 |
| MvaI | CCWGG | 1 cut(s) | 804 |
| MvnI | CGCG | 1 cut(s) | 780 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 138 |
| NdeI | CATATG | 1 cut(s) | 705 |
| NdeII | GATC | 5 cut(s) | 175, 421, 496, 806, 987 |
| NlaIII | CATG | 5 cut(s) | 375, 800, 826, 841, 911 |
| NmuCI | GTSAC | 2 cut(s) | 49, 464 |
| NsiI | ATGCAT | 1 cut(s) | 373 |
| PagI | TCATGA | 1 cut(s) | 822 |
| PaqCI | CACCTGC | 1 cut(s) | 299 |
| PctI | GAATGC | 2 cut(s) | 475, 619 |
| PdmI | GAANNNNTTC | 2 cut(s) | 165, 236 |
| PfeI | GAWTC | 3 cut(s) | 398, 605, 896 |
| PkrI | GCNGC | 1 cut(s) | 515 |
| Psp6I | CCWGG | 1 cut(s) | 802 |
| PspGI | CCWGG | 1 cut(s) | 802 |
| PspPI | GGNCC | 1 cut(s) | 793 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1041, 1073 |
| PsuI | RGATCY | 2 cut(s) | 175, 421 |
| PvuII | CAGCTG | 1 cut(s) | 998 |
| RsaI | GTAC | 5 cut(s) | 343, 586, 678, 964, 1050 |
| RsaNI | GTAC | 5 cut(s) | 342, 585, 677, 963, 1049 |
| SaqAI | TTAA | 3 cut(s) | 488, 651, 923 |
| SatI | GCNGC | 1 cut(s) | 514 |
| Sau3AI | GATC | 5 cut(s) | 175, 421, 496, 806, 987 |
| Sau96I | GGNCC | 1 cut(s) | 793 |
| ScaI | AGTACT | 1 cut(s) | 343 |
| ScrFI | CCNGG | 1 cut(s) | 804 |
| SfaNI | GCATC | 4 cut(s) | 295, 358, 525, 795 |
| Sse9I | AATT | 5 cut(s) | 10, 145, 162, 540, 742 |
| SsiI | CCGC | 2 cut(s) | 514, 780 |
| SspI | AATATT | 2 cut(s) | 115, 928 |
| SspMI | CTAG | 1 cut(s) | 869 |
| StyD4I | CCNGG | 1 cut(s) | 802 |
| TaaI | ACNGT | 4 cut(s) | 254, 464, 470, 1057 |
| TaqI | TCGA | 2 cut(s) | 555, 986 |
| TasI | AATT | 5 cut(s) | 10, 145, 162, 540, 742 |
| TatI | WGTACW | 3 cut(s) | 341, 584, 962 |
| TauI | GCSGC | 1 cut(s) | 516 |
| TfiI | GAWTC | 3 cut(s) | 398, 605, 896 |
| Tru1I | TTAA | 3 cut(s) | 488, 651, 923 |
| Tru9I | TTAA | 3 cut(s) | 488, 651, 923 |
| TseFI | GTSAC | 2 cut(s) | 49, 464 |
| Tsp45I | GTSAC | 2 cut(s) | 49, 464 |
| TspDTI | ATGAA | 4 cut(s) | 722, 731, 811, 826 |
| XapI | RAATTY | 2 cut(s) | 10, 162 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 897 |
| XmnI | GAANNNNTTC | 2 cut(s) | 165, 236 |
| XspI | CTAG | 1 cut(s) | 869 |
| ZrmI | AGTACT | 1 cut(s) | 343 |
| Zsp2I | ATGCAT | 1 cut(s) | 373 |