SNF2 domain-containing protein CLASSY
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0330471 |
| rosa_laevigata | RLG00000029807 RLG00000029808 |
| rosa_multiflora | Rmu_sc0000815.1_g000008 |
| rosa_samantha | Rh1AG107200 Rh1BG085400 Rh1CG103100 Rh1DG112800 |
| rosa_wichuraiana | Rw1G008900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 507 |
| AccII | CGCG | 1 cut(s) | 183 |
| AciI | CCGC | 1 cut(s) | 183 |
| AclWI | GGATC | 2 cut(s) | 75, 217 |
| AcuI | CTGAAG | 1 cut(s) | 477 |
| AfaI | GTAC | 2 cut(s) | 81, 362 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 212, 290, 460, 507, 605 |
| AgsI | TTSAA | 3 cut(s) | 145, 515, 593 |
| AjnI | CCWGG | 2 cut(s) | 205, 403 |
| AluBI | AGCT | 3 cut(s) | 396, 443, 505 |
| AluI | AGCT | 3 cut(s) | 396, 443, 505 |
| Alw26I | GTCTC | 1 cut(s) | 254 |
| AlwI | GGATC | 2 cut(s) | 75, 217 |
| AoxI | GGCC | 1 cut(s) | 195 |
| AseI | ATTAAT | 1 cut(s) | 494 |
| AspS9I | GGNCC | 1 cut(s) | 196 |
| AsuHPI | GGTGA | 2 cut(s) | 182, 458 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 148, 182 |
| BciT130I | CCWGG | 2 cut(s) | 207, 405 |
| BciVI | GTATCC | 2 cut(s) | 295, 547 |
| BcoDI | GTCTC | 1 cut(s) | 254 |
| BfmI | CTRYAG | 1 cut(s) | 628 |
| BfuI | GTATCC | 2 cut(s) | 295, 547 |
| Bme1390I | CCNGG | 2 cut(s) | 207, 405 |
| BmgT120I | GGNCC | 1 cut(s) | 196 |
| BmrFI | CCNGG | 2 cut(s) | 207, 405 |
| BmsI | GCATC | 1 cut(s) | 198 |
| BpmI | CTGGAG | 1 cut(s) | 418 |
| Bsa29I | ATCGAT | 1 cut(s) | 384 |
| BsaI | GGTCTC | 1 cut(s) | 254 |
| BsaJI | CCNNGG | 1 cut(s) | 205 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 391, 421, 600, 630 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 212, 290, 460, 507, 605 |
| Bse1I | ACTGG | 2 cut(s) | 279, 599 |
| BseBI | CCWGG | 2 cut(s) | 207, 405 |
| BseCI | ATCGAT | 1 cut(s) | 384 |
| BseDI | CCNNGG | 1 cut(s) | 205 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 212, 290, 460, 507, 605 |
| BseMII | CTCAG | 2 cut(s) | 30, 249 |
| BseNI | ACTGG | 2 cut(s) | 279, 599 |
| BsgI | GTGCAG | 1 cut(s) | 78 |
| Bsh1236I | CGCG | 1 cut(s) | 183 |
| BshFI | GGCC | 1 cut(s) | 197 |
| BshVI | ATCGAT | 1 cut(s) | 384 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 212, 290, 460, 507, 605 |
| BsmAI | GTCTC | 1 cut(s) | 254 |
| BsmI | GAATGC | 1 cut(s) | 22 |
| BsnI | GGCC | 1 cut(s) | 197 |
| Bso31I | GGTCTC | 1 cut(s) | 254 |
| Bsp1407I | TGTACA | 1 cut(s) | 360 |
| Bsp143I | GATC | 5 cut(s) | 67, 209, 385, 466, 580 |
| BspACI | CCGC | 1 cut(s) | 183 |
| BspANI | GGCC | 1 cut(s) | 197 |
| BspCNI | CTCAG | 2 cut(s) | 31, 250 |
| BspDI | ATCGAT | 1 cut(s) | 384 |
| BspFNI | CGCG | 1 cut(s) | 183 |
| BspHI | TCATGA | 1 cut(s) | 225 |
| BspPI | GGATC | 2 cut(s) | 75, 217 |
| BspTNI | GGTCTC | 1 cut(s) | 254 |
| BsrGI | TGTACA | 1 cut(s) | 360 |
| BsrI | ACTGG | 2 cut(s) | 279, 599 |
| BssECI | CCNNGG | 1 cut(s) | 205 |
| BssMI | GATC | 5 cut(s) | 67, 209, 385, 466, 580 |
| Bst2UI | CCWGG | 2 cut(s) | 207, 405 |
| Bst4CI | ACNGT | 1 cut(s) | 559 |
| Bst6I | CTCTTC | 1 cut(s) | 453 |
| BstAUI | TGTACA | 1 cut(s) | 360 |
| BstC8I | GCNNGC | 1 cut(s) | 482 |
| BstDEI | CTNAG | 2 cut(s) | 39, 258 |
| BstFNI | CGCG | 1 cut(s) | 183 |
| BstKTI | GATC | 5 cut(s) | 70, 212, 388, 469, 583 |
| BstMAI | GTCTC | 1 cut(s) | 254 |
| BstMBI | GATC | 5 cut(s) | 67, 209, 385, 466, 580 |
| BstNI | CCWGG | 2 cut(s) | 207, 405 |
| BstSCI | CCNGG | 2 cut(s) | 205, 403 |
| BstSFI | CTRYAG | 1 cut(s) | 628 |
| BstUI | CGCG | 1 cut(s) | 183 |
| Bsu15I | ATCGAT | 1 cut(s) | 384 |
| BsuI | GTATCC | 2 cut(s) | 295, 547 |
| BsuRI | GGCC | 1 cut(s) | 197 |
| BsuTUI | ATCGAT | 1 cut(s) | 384 |
| BtsIMutI | CAGTG | 1 cut(s) | 606 |
| Cac8I | GCNNGC | 1 cut(s) | 482 |
| CciI | TCATGA | 1 cut(s) | 225 |
| Cfr13I | GGNCC | 1 cut(s) | 196 |
| ClaI | ATCGAT | 1 cut(s) | 384 |
| Csp6I | GTAC | 2 cut(s) | 80, 361 |
| CviAII | CATG | 4 cut(s) | 200, 226, 241, 306 |
| CviJI | RGCY | 5 cut(s) | 197, 396, 443, 453, 505 |
| CviKI_1 | RGCY | 5 cut(s) | 197, 396, 443, 453, 505 |
| CviQI | GTAC | 2 cut(s) | 80, 361 |
| DdeI | CTNAG | 2 cut(s) | 39, 258 |
| DpnI | GATC | 5 cut(s) | 69, 211, 387, 468, 582 |
| DpnII | GATC | 5 cut(s) | 67, 209, 385, 466, 580 |
| DraI | TTTAAA | 1 cut(s) | 322 |
| Eam1104I | CTCTTC | 1 cut(s) | 453 |
| EarI | CTCTTC | 1 cut(s) | 453 |
| Eco31I | GGTCTC | 1 cut(s) | 254 |
| Eco57I | CTGAAG | 1 cut(s) | 477 |
| EcoRII | CCWGG | 2 cut(s) | 205, 403 |
| FaeI | CATG | 4 cut(s) | 203, 229, 244, 309 |
| FatI | CATG | 4 cut(s) | 199, 225, 240, 305 |
| FauNDI | CATATG | 1 cut(s) | 108 |
| GsuI | CTGGAG | 1 cut(s) | 418 |
| HaeIII | GGCC | 1 cut(s) | 197 |
| Hin1II | CATG | 4 cut(s) | 203, 229, 244, 309 |
| HinfI | GANTC | 3 cut(s) | 8, 294, 400 |
| HphI | GGTGA | 2 cut(s) | 182, 458 |
| Hpy166II | GTNNAC | 1 cut(s) | 369 |
| Hpy188I | TCNGA | 2 cut(s) | 15, 64 |
| Hpy188III | TCNNGA | 2 cut(s) | 226, 539 |
| Hpy8I | GTNNAC | 1 cut(s) | 369 |
| HpyAV | CCTTC | 1 cut(s) | 627 |
| HpyCH4III | ACNGT | 1 cut(s) | 559 |
| HpyCH4V | TGCA | 4 cut(s) | 95, 189, 244, 484 |
| HpyF3I | CTNAG | 2 cut(s) | 39, 258 |
| Hsp92II | CATG | 4 cut(s) | 203, 229, 244, 309 |
| Kzo9I | GATC | 5 cut(s) | 67, 209, 385, 466, 580 |
| LweI | GCATC | 1 cut(s) | 198 |
| MaeIII | GTNAC | 1 cut(s) | 248 |
| MalI | GATC | 5 cut(s) | 69, 211, 387, 468, 582 |
| MboI | GATC | 5 cut(s) | 67, 209, 385, 466, 580 |
| MboII | GAAGA | 3 cut(s) | 470, 476, 623 |
| MluCI | AATT | 3 cut(s) | 145, 491, 495 |
| MlyI | GAGTC | 1 cut(s) | 409 |
| MseI | TTAA | 3 cut(s) | 54, 321, 494 |
| MspA1I | CMGCKG | 1 cut(s) | 396 |
| MspR9I | CCNGG | 2 cut(s) | 207, 405 |
| Mva1269I | GAATGC | 1 cut(s) | 22 |
| MvaI | CCWGG | 2 cut(s) | 207, 405 |
| MvnI | CGCG | 1 cut(s) | 183 |
| NdeI | CATATG | 1 cut(s) | 108 |
| NdeII | GATC | 5 cut(s) | 67, 209, 385, 466, 580 |
| NlaIII | CATG | 4 cut(s) | 203, 229, 244, 309 |
| PagI | TCATGA | 1 cut(s) | 225 |
| PctI | GAATGC | 1 cut(s) | 22 |
| PfeI | GAWTC | 2 cut(s) | 8, 294 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 507 |
| PleI | GAGTC | 1 cut(s) | 408 |
| PpsI | GAGTC | 1 cut(s) | 408 |
| PshBI | ATTAAT | 1 cut(s) | 494 |
| Psp6I | CCWGG | 2 cut(s) | 205, 403 |
| PspGI | CCWGG | 2 cut(s) | 205, 403 |
| PspPI | GGNCC | 1 cut(s) | 196 |
| PvuII | CAGCTG | 1 cut(s) | 396 |
| RsaI | GTAC | 2 cut(s) | 81, 362 |
| RsaNI | GTAC | 2 cut(s) | 80, 361 |
| SaqAI | TTAA | 3 cut(s) | 54, 321, 494 |
| Sau3AI | GATC | 5 cut(s) | 67, 209, 385, 466, 580 |
| Sau96I | GGNCC | 1 cut(s) | 196 |
| SchI | GAGTC | 1 cut(s) | 409 |
| ScrFI | CCNGG | 2 cut(s) | 207, 405 |
| SetI | ASST | 9 cut(s) | 45, 52, 85, 127, 255, 398, 445, 507, 638 |
| SfaNI | GCATC | 1 cut(s) | 198 |
| SfcI | CTRYAG | 1 cut(s) | 628 |
| Sse9I | AATT | 3 cut(s) | 145, 491, 495 |
| SsiI | CCGC | 1 cut(s) | 183 |
| SspI | AATATT | 2 cut(s) | 326, 527 |
| StyD4I | CCNGG | 2 cut(s) | 205, 403 |
| TaaI | ACNGT | 1 cut(s) | 559 |
| TaqI | TCGA | 1 cut(s) | 384 |
| TasI | AATT | 3 cut(s) | 145, 491, 495 |
| TatI | WGTACW | 1 cut(s) | 360 |
| TfiI | GAWTC | 2 cut(s) | 8, 294 |
| Tru1I | TTAA | 3 cut(s) | 54, 321, 494 |
| Tru9I | TTAA | 3 cut(s) | 54, 321, 494 |
| TscAI | CASTG | 1 cut(s) | 606 |
| TspDTI | ATGAA | 5 cut(s) | 125, 134, 214, 229, 537 |
| TspRI | CASTG | 1 cut(s) | 606 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 507 |
| VspI | ATTAAT | 1 cut(s) | 494 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 295 |