SNF2 domain-containing protein CLASSY
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0330471 |
| rosa_laevigata | RLG00000029807 RLG00000029808 |
| rosa_multiflora | Rmu_sc0000815.1_g000008 |
| rosa_samantha | Rh1AG107200 Rh1BG085400 Rh1CG103100 Rh1DG112800 |
| rosa_wichuraiana | Rw1G008900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 92 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 771 |
| AcsI | RAATTY | 1 cut(s) | 10 |
| AcuI | CTGAAG | 1 cut(s) | 741 |
| AfaI | GTAC | 4 cut(s) | 127, 219, 505, 591 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 350, 433, 724, 771, 869 |
| AgsI | TTSAA | 4 cut(s) | 283, 551, 779, 857 |
| AjnI | CCWGG | 3 cut(s) | 343, 647, 667 |
| AluBI | AGCT | 3 cut(s) | 539, 707, 769 |
| AluI | AGCT | 3 cut(s) | 539, 707, 769 |
| Alw26I | GTCTC | 2 cut(s) | 26, 392 |
| AoxI | GGCC | 1 cut(s) | 333 |
| ApoI | RAATTY | 1 cut(s) | 10 |
| AseI | ATTAAT | 1 cut(s) | 758 |
| AspS9I | GGNCC | 1 cut(s) | 334 |
| AsuHPI | GGTGA | 4 cut(s) | 62, 320, 593, 722 |
| BauI | CACGAG | 1 cut(s) | 318 |
| BccI | CCATC | 1 cut(s) | 200 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 286, 320 |
| BciT130I | CCWGG | 3 cut(s) | 345, 649, 669 |
| BciVI | GTATCC | 3 cut(s) | 438, 585, 811 |
| BcoDI | GTCTC | 2 cut(s) | 26, 392 |
| BfaI | CTAG | 1 cut(s) | 410 |
| BfmI | CTRYAG | 1 cut(s) | 892 |
| BfuI | GTATCC | 3 cut(s) | 438, 585, 811 |
| Bme1390I | CCNGG | 3 cut(s) | 345, 649, 669 |
| BmgT120I | GGNCC | 1 cut(s) | 334 |
| BmrFI | CCNGG | 3 cut(s) | 345, 649, 669 |
| BmsI | GCATC | 1 cut(s) | 336 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 37, 69 |
| BpmI | CTGGAG | 1 cut(s) | 561 |
| Bsa29I | ATCGAT | 1 cut(s) | 527 |
| BsaI | GGTCTC | 1 cut(s) | 392 |
| BsaJI | CCNNGG | 1 cut(s) | 343 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 864, 894 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 350, 433, 724, 771, 869 |
| Bse1I | ACTGG | 2 cut(s) | 422, 863 |
| BseBI | CCWGG | 3 cut(s) | 345, 649, 669 |
| BseCI | ATCGAT | 1 cut(s) | 527 |
| BseDI | CCNNGG | 1 cut(s) | 343 |
| BseGI | GGATG | 1 cut(s) | 211 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 350, 433, 724, 771, 869 |
| BseMII | CTCAG | 3 cut(s) | 47, 168, 387 |
| BseNI | ACTGG | 2 cut(s) | 422, 863 |
| BsgI | GTGCAG | 1 cut(s) | 216 |
| BshFI | GGCC | 1 cut(s) | 335 |
| BshVI | ATCGAT | 1 cut(s) | 527 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 350, 433, 724, 771, 869 |
| BsmAI | GTCTC | 2 cut(s) | 26, 392 |
| BsmI | GAATGC | 1 cut(s) | 160 |
| BsnI | GGCC | 1 cut(s) | 335 |
| Bso31I | GGTCTC | 1 cut(s) | 392 |
| Bsp1407I | TGTACA | 1 cut(s) | 503 |
| Bsp143I | GATC | 3 cut(s) | 528, 730, 844 |
| BspANI | GGCC | 1 cut(s) | 335 |
| BspCNI | CTCAG | 3 cut(s) | 48, 169, 388 |
| BspDI | ATCGAT | 1 cut(s) | 527 |
| BspHI | TCATGA | 1 cut(s) | 363 |
| BspTNI | GGTCTC | 1 cut(s) | 392 |
| BsrGI | TGTACA | 1 cut(s) | 503 |
| BsrI | ACTGG | 2 cut(s) | 422, 863 |
| BssECI | CCNNGG | 1 cut(s) | 343 |
| BssMI | GATC | 3 cut(s) | 528, 730, 844 |
| BssSI | CACGAG | 1 cut(s) | 318 |
| Bst2BI | CACGAG | 1 cut(s) | 318 |
| Bst2UI | CCWGG | 3 cut(s) | 345, 649, 669 |
| Bst4CI | ACNGT | 2 cut(s) | 598, 823 |
| Bst6I | CTCTTC | 3 cut(s) | 564, 585, 717 |
| BstAUI | TGTACA | 1 cut(s) | 503 |
| BstC8I | GCNNGC | 1 cut(s) | 746 |
| BstDEI | CTNAG | 4 cut(s) | 56, 177, 396, 584 |
| BstF5I | GGATG | 1 cut(s) | 211 |
| BstKTI | GATC | 3 cut(s) | 531, 733, 847 |
| BstMAI | GTCTC | 2 cut(s) | 26, 392 |
| BstMBI | GATC | 3 cut(s) | 528, 730, 844 |
| BstNI | CCWGG | 3 cut(s) | 345, 649, 669 |
| BstSCI | CCNGG | 3 cut(s) | 343, 647, 667 |
| BstSFI | CTRYAG | 1 cut(s) | 892 |
| Bsu15I | ATCGAT | 1 cut(s) | 527 |
| BsuI | GTATCC | 3 cut(s) | 438, 585, 811 |
| BsuRI | GGCC | 1 cut(s) | 335 |
| BsuTUI | ATCGAT | 1 cut(s) | 527 |
| BtsCI | GGATG | 1 cut(s) | 211 |
| BtsIMutI | CAGTG | 1 cut(s) | 870 |
| Cac8I | GCNNGC | 1 cut(s) | 746 |
| CciI | TCATGA | 1 cut(s) | 363 |
| Cfr13I | GGNCC | 1 cut(s) | 334 |
| ClaI | ATCGAT | 1 cut(s) | 527 |
| CseI | GACGC | 1 cut(s) | 37 |
| Csp6I | GTAC | 4 cut(s) | 126, 218, 504, 590 |
| CviAII | CATG | 4 cut(s) | 338, 364, 379, 449 |
| CviJI | RGCY | 6 cut(s) | 100, 335, 539, 707, 717, 769 |
| CviKI_1 | RGCY | 6 cut(s) | 100, 335, 539, 707, 717, 769 |
| CviQI | GTAC | 4 cut(s) | 126, 218, 504, 590 |
| DdeI | CTNAG | 4 cut(s) | 56, 177, 396, 584 |
| DpnI | GATC | 3 cut(s) | 530, 732, 846 |
| DpnII | GATC | 3 cut(s) | 528, 730, 844 |
| DraI | TTTAAA | 1 cut(s) | 465 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 92 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 92 |
| Eam1104I | CTCTTC | 3 cut(s) | 564, 585, 717 |
| EarI | CTCTTC | 3 cut(s) | 564, 585, 717 |
| Eco31I | GGTCTC | 1 cut(s) | 392 |
| Eco57I | CTGAAG | 1 cut(s) | 741 |
| EcoRI | GAATTC | 1 cut(s) | 10 |
| EcoRII | CCWGG | 3 cut(s) | 343, 647, 667 |
| FaeI | CATG | 4 cut(s) | 341, 367, 382, 452 |
| FatI | CATG | 4 cut(s) | 337, 363, 378, 448 |
| FokI | GGATG | 1 cut(s) | 218 |
| FspBI | CTAG | 1 cut(s) | 410 |
| GsuI | CTGGAG | 1 cut(s) | 561 |
| HaeIII | GGCC | 1 cut(s) | 335 |
| HgaI | GACGC | 1 cut(s) | 37 |
| Hin1II | CATG | 4 cut(s) | 341, 367, 382, 452 |
| HinfI | GANTC | 2 cut(s) | 146, 437 |
| HphI | GGTGA | 4 cut(s) | 62, 320, 593, 722 |
| Hpy166II | GTNNAC | 2 cut(s) | 512, 601 |
| Hpy188I | TCNGA | 5 cut(s) | 30, 57, 153, 202, 568 |
| Hpy188III | TCNNGA | 2 cut(s) | 364, 803 |
| Hpy8I | GTNNAC | 2 cut(s) | 512, 601 |
| Hpy99I | CGWCG | 1 cut(s) | 308 |
| HpyAV | CCTTC | 2 cut(s) | 35, 891 |
| HpyCH4III | ACNGT | 2 cut(s) | 598, 823 |
| HpyCH4V | TGCA | 3 cut(s) | 233, 327, 382 |
| HpyF3I | CTNAG | 4 cut(s) | 56, 177, 396, 584 |
| Hsp92II | CATG | 4 cut(s) | 341, 367, 382, 452 |
| Kzo9I | GATC | 3 cut(s) | 528, 730, 844 |
| LweI | GCATC | 1 cut(s) | 336 |
| MaeI | CTAG | 1 cut(s) | 410 |
| MaeIII | GTNAC | 2 cut(s) | 49, 386 |
| MalI | GATC | 3 cut(s) | 530, 732, 846 |
| MboI | GATC | 3 cut(s) | 528, 730, 844 |
| MboII | GAAGA | 6 cut(s) | 563, 572, 581, 734, 740, 887 |
| MluCI | AATT | 5 cut(s) | 10, 283, 663, 755, 759 |
| MseI | TTAA | 4 cut(s) | 192, 464, 662, 758 |
| MslI | CAYNNNNRTG | 1 cut(s) | 111 |
| MspA1I | CMGCKG | 1 cut(s) | 539 |
| MspR9I | CCNGG | 3 cut(s) | 345, 649, 669 |
| Mva1269I | GAATGC | 1 cut(s) | 160 |
| MvaI | CCWGG | 3 cut(s) | 345, 649, 669 |
| NdeII | GATC | 3 cut(s) | 528, 730, 844 |
| NlaIII | CATG | 4 cut(s) | 341, 367, 382, 452 |
| NmuCI | GTSAC | 1 cut(s) | 49 |
| PagI | TCATGA | 1 cut(s) | 363 |
| PctI | GAATGC | 1 cut(s) | 160 |
| PfeI | GAWTC | 2 cut(s) | 146, 437 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 771 |
| PshBI | ATTAAT | 1 cut(s) | 758 |
| Psp6I | CCWGG | 3 cut(s) | 343, 647, 667 |
| PspGI | CCWGG | 3 cut(s) | 343, 647, 667 |
| PspPI | GGNCC | 1 cut(s) | 334 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 582, 614 |
| PvuII | CAGCTG | 1 cut(s) | 539 |
| RsaI | GTAC | 4 cut(s) | 127, 219, 505, 591 |
| RsaNI | GTAC | 4 cut(s) | 126, 218, 504, 590 |
| RseI | CAYNNNNRTG | 1 cut(s) | 111 |
| SaqAI | TTAA | 4 cut(s) | 192, 464, 662, 758 |
| Sau3AI | GATC | 3 cut(s) | 528, 730, 844 |
| Sau96I | GGNCC | 1 cut(s) | 334 |
| ScrFI | CCNGG | 3 cut(s) | 345, 649, 669 |
| SfaNI | GCATC | 1 cut(s) | 336 |
| SfcI | CTRYAG | 1 cut(s) | 892 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 111 |
| Sse9I | AATT | 5 cut(s) | 10, 283, 663, 755, 759 |
| SspI | AATATT | 2 cut(s) | 469, 791 |
| SspMI | CTAG | 1 cut(s) | 410 |
| StyD4I | CCNGG | 3 cut(s) | 343, 647, 667 |
| TaaI | ACNGT | 2 cut(s) | 598, 823 |
| TaqI | TCGA | 1 cut(s) | 527 |
| TasI | AATT | 5 cut(s) | 10, 283, 663, 755, 759 |
| TatI | WGTACW | 2 cut(s) | 125, 503 |
| TfiI | GAWTC | 2 cut(s) | 146, 437 |
| Tru1I | TTAA | 4 cut(s) | 192, 464, 662, 758 |
| Tru9I | TTAA | 4 cut(s) | 192, 464, 662, 758 |
| TscAI | CASTG | 1 cut(s) | 870 |
| TseFI | GTSAC | 1 cut(s) | 49 |
| Tsp45I | GTSAC | 1 cut(s) | 49 |
| TspDTI | ATGAA | 4 cut(s) | 272, 352, 367, 801 |
| TspRI | CASTG | 1 cut(s) | 870 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 771 |
| VspI | ATTAAT | 1 cut(s) | 758 |
| XapI | RAATTY | 1 cut(s) | 10 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 438 |
| XspI | CTAG | 1 cut(s) | 410 |