RLG00000029808

SNF2 domain-containing protein CLASSY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018957
Physical Location & Seq
Forward (+)
49532216 .. 49534010
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029808

Sequence Viewer

Length: 972 bp
ATGCCTGATTCTTGGAATGCCAAAGATAGAGATTTGACTGAGGTGGGAGGTGTTAAACTTTCAGAGGATGGTTTGATAGTAACTGAAATATCTGCACACCCAAGACATATGAAGCAAATGAAACCTCATCAAGTGGAGGGTTTCAATTTTCTTGTTAGCAACTTGGTCGGTGATAACCCTCGCGGTTGCATCTTGGCCCATGCCCCAGGATCAGGCAAAACATTCATGATAACCAGTTTCATGCAAAGTTACCTCGCTAAGACCCAAATGCTAGACTACTGGTTGTTCCACCCAAAGGAATCTTGGATACATGGGAAAAGGAGTTTAAATATTGGCAAGTGGAGGATATTCCACCATTTGATTTGTACAAGTCCACAAGGCAGACAATCGATCACAACAGCTGGAGGTTTTGAAGAAGTGGGTCGATCAGAAGAGCCTCTTCTTAGGTTTCTAAGATCAAATACTTCCCGACCCATCATCAAGCGCATGATGAGTAGAGTACTTATACCAGGTGCAAGGAAGCAGTTCAAAGCTGGTGGTGATAGCTTCTATGATCTAGTGGAGGATACTCTCCAAAAGGACAAGGATTTTAGAAGGAAGGTGACTGTCATACATGACTTGCGTGAGATGACCAACAAGGGTTGGACTTTTGGAAGAGAAATTTTTGTGATCACAGGTGGGTCAAAATCTGGGAATCGGGTGTGGTCCATGGTGGGGTTTAACAATTCACCTGATGCTGAGGTCCTCTTCGGCTCAATCAAGGCATGTGGAGAGGCTGGTGATAGCCCTGAAGAGGAAGATCATAAAACTTGCTTGCAAAAGGAATTAATTGCCAAGCTGTGGTTTGAATGGAATGAATATTGTGGTTATCGGGATTTTGGAGTGGATACTGTTGATGTGAGAGATTGTGCTGATCTGTTCCTTGAATGTCCAGTGTTAGGAGAAGATGTAAAGGTTCTCTATAGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
Helicase_C SNF2_N

Protein Analysis

324

Amino Acids

36.78

Weight (kDa)

7.64

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018957)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330471
rosa_laevigata RLG00000029807 RLG00000029808
rosa_multiflora Rmu_sc0000815.1_g000008
rosa_samantha Rh1AG107200 Rh1BG085400 Rh1CG103100 Rh1DG112800
rosa_wichuraiana Rw1G008900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 840
AccII CGCG 1 cut(s) 183
AciI CCGC 1 cut(s) 183
AclWI GGATC 1 cut(s) 217
AcsI RAATTY 1 cut(s) 660
AcuI CTGAAG 1 cut(s) 810
AfaI GTAC 2 cut(s) 367, 501
AfiI CCNNNNNNNGG 6 cut(s) 212, 295, 714, 793, 840, 938
AgsI TTSAA 5 cut(s) 145, 413, 529, 848, 926
AjnI CCWGG 2 cut(s) 205, 508
AluBI AGCT 4 cut(s) 401, 533, 546, 838
AluI AGCT 4 cut(s) 401, 533, 546, 838
AlwI GGATC 1 cut(s) 217
AoxI GGCC 1 cut(s) 195
ApoI RAATTY 1 cut(s) 660
AseI ATTAAT 1 cut(s) 827
Asp700I GAANNNNTTC 1 cut(s) 524
AspLEI GCGC 1 cut(s) 486
AspS9I GGNCC 3 cut(s) 196, 705, 742
AsuHPI GGTGA 5 cut(s) 182, 551, 613, 720, 791
AvaII GGWCC 2 cut(s) 705, 742
BbvCI CCTCAGC 1 cut(s) 738
BccI CCATC 2 cut(s) 62, 482
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 2 cut(s) 207, 510
BciVI GTATCC 3 cut(s) 300, 559, 880
BclI TGATCA 1 cut(s) 669
BfaI CTAG 2 cut(s) 272, 557
BfmI CTRYAG 1 cut(s) 961
BfuI GTATCC 3 cut(s) 300, 559, 880
BmcAI AGTACT 1 cut(s) 501
Bme1390I CCNGG 2 cut(s) 207, 510
Bme18I GGWCC 2 cut(s) 705, 742
BmgT120I GGNCC 3 cut(s) 196, 705, 742
BmrFI CCNGG 2 cut(s) 207, 510
BmsI GCATC 2 cut(s) 198, 724
BpmI CTGGAG 1 cut(s) 423
Bpu10I CCTNAGC 1 cut(s) 738
Bsa29I ATCGAT 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 205, 708
BsaXI ACNNNNNCTCC 2 cut(s) 933, 963
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 295, 714, 793, 840, 938
Bse1I ACTGG 3 cut(s) 234, 284, 932
BseBI CCWGG 2 cut(s) 207, 510
BseCI ATCGAT 1 cut(s) 389
BseDI CCNNGG 2 cut(s) 205, 708
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 6 cut(s) 212, 295, 714, 793, 840, 938
BseMII CTCAG 2 cut(s) 30, 729
BseNI ACTGG 3 cut(s) 234, 284, 932
BsgI GTGCAG 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 389
BslI CCNNNNNNNGG 6 cut(s) 212, 295, 714, 793, 840, 938
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 1 cut(s) 197
Bsp1407I TGTACA 1 cut(s) 365
Bsp143I GATC 8 cut(s) 209, 390, 425, 455, 553, 669, 799, 913
Bsp19I CCATGG 1 cut(s) 708
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 31, 730
BspDI ATCGAT 1 cut(s) 389
BspFNI CGCG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 225
BspPI GGATC 1 cut(s) 217
BspQI GCTCTTC 1 cut(s) 426
BsrGI TGTACA 1 cut(s) 365
BsrI ACTGG 3 cut(s) 234, 284, 932
BssECI CCNNGG 2 cut(s) 205, 708
BssMI GATC 8 cut(s) 209, 390, 425, 455, 553, 669, 799, 913
BssT1I CCWWGG 1 cut(s) 708
Bst2UI CCWGG 2 cut(s) 207, 510
Bst4CI ACNGT 2 cut(s) 607, 892
Bst6I CTCTTC 5 cut(s) 426, 444, 649, 752, 786
BstAUI TGTACA 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 815
BstDEI CTNAG 5 cut(s) 39, 258, 443, 452, 738
BstDSI CCRYGG 1 cut(s) 708
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 8 cut(s) 212, 393, 428, 458, 556, 672, 802, 916
BstMBI GATC 8 cut(s) 209, 390, 425, 455, 553, 669, 799, 913
BstNI CCWGG 2 cut(s) 207, 510
BstNSI RCATGY 1 cut(s) 768
BstSCI CCNGG 2 cut(s) 205, 508
BstSFI CTRYAG 1 cut(s) 961
BstUI CGCG 1 cut(s) 183
Bsu15I ATCGAT 1 cut(s) 389
BsuI GTATCC 3 cut(s) 300, 559, 880
BsuRI GGCC 1 cut(s) 197
BsuTUI ATCGAT 1 cut(s) 389
BtgI CCRYGG 1 cut(s) 708
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 939
Cac8I GCNNGC 1 cut(s) 815
CciI TCATGA 1 cut(s) 225
CfoI GCGC 1 cut(s) 486
Cfr13I GGNCC 3 cut(s) 196, 705, 742
ClaI ATCGAT 1 cut(s) 389
CsiI ACCWGGT 1 cut(s) 508
Csp6I GTAC 2 cut(s) 366, 500
CspCI CAANNNNNGTGG 4 cut(s) 517, 552, 748, 783
CviAII CATG 8 cut(s) 200, 226, 241, 311, 487, 614, 709, 765
CviJI RGCY 9 cut(s) 197, 401, 436, 533, 546, 753, 776, 786, 838
CviKI_1 RGCY 9 cut(s) 197, 401, 436, 533, 546, 753, 776, 786, 838
CviQI GTAC 2 cut(s) 366, 500
DdeI CTNAG 5 cut(s) 39, 258, 443, 452, 738
DpnI GATC 8 cut(s) 211, 392, 427, 457, 555, 671, 801, 915
DpnII GATC 8 cut(s) 209, 390, 425, 455, 553, 669, 799, 913
DraI TTTAAA 1 cut(s) 327
Eam1104I CTCTTC 5 cut(s) 426, 444, 649, 752, 786
EarI CTCTTC 5 cut(s) 426, 444, 649, 752, 786
Eco130I CCWWGG 1 cut(s) 708
Eco47I GGWCC 2 cut(s) 705, 742
Eco57I CTGAAG 1 cut(s) 810
EcoO109I RGGNCCY 1 cut(s) 742
EcoRII CCWGG 2 cut(s) 205, 508
EcoT14I CCWWGG 1 cut(s) 708
ErhI CCWWGG 1 cut(s) 708
FaeI CATG 8 cut(s) 203, 229, 244, 314, 490, 617, 712, 768
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 8 cut(s) 199, 225, 240, 310, 486, 613, 708, 764
FauNDI CATATG 1 cut(s) 108
FbaI TGATCA 1 cut(s) 669
FokI GGATG 1 cut(s) 80
FspBI CTAG 2 cut(s) 272, 557
GlaI GCGC 1 cut(s) 485
GsuI CTGGAG 1 cut(s) 423
HaeIII GGCC 1 cut(s) 197
HhaI GCGC 1 cut(s) 486
Hin1II CATG 8 cut(s) 203, 229, 244, 314, 490, 617, 712, 768
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HinfI GANTC 3 cut(s) 8, 299, 694
HphI GGTGA 5 cut(s) 182, 551, 613, 720, 791
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 2 cut(s) 64, 430
Hpy188III TCNNGA 3 cut(s) 226, 468, 872
Hpy8I GTNNAC 1 cut(s) 374
HpyAV CCTTC 3 cut(s) 588, 592, 960
HpyCH4III ACNGT 2 cut(s) 607, 892
HpyCH4V TGCA 5 cut(s) 95, 189, 244, 515, 817
HpyF3I CTNAG 5 cut(s) 39, 258, 443, 452, 738
Hsp92II CATG 8 cut(s) 203, 229, 244, 314, 490, 617, 712, 768
HspAI GCGC 1 cut(s) 484
Ksp22I TGATCA 1 cut(s) 669
Kzo9I GATC 8 cut(s) 209, 390, 425, 455, 553, 669, 799, 913
LguI GCTCTTC 1 cut(s) 426
LweI GCATC 2 cut(s) 198, 724
MabI ACCWGGT 1 cut(s) 508
MaeI CTAG 2 cut(s) 272, 557
MaeIII GTNAC 3 cut(s) 79, 248, 601
MalI GATC 8 cut(s) 211, 392, 427, 457, 555, 671, 801, 915
MboI GATC 8 cut(s) 209, 390, 425, 455, 553, 669, 799, 913
MboII GAAGA 8 cut(s) 425, 431, 443, 666, 739, 803, 809, 956
MluCI AATT 5 cut(s) 145, 660, 724, 824, 828
MmeI TCCRAC 1 cut(s) 623
MroXI GAANNNNTTC 1 cut(s) 524
MseI TTAA 4 cut(s) 54, 326, 720, 827
MspA1I CMGCKG 1 cut(s) 401
MspR9I CCNGG 2 cut(s) 207, 510
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 2 cut(s) 207, 510
MvnI CGCG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 708
NdeI CATATG 1 cut(s) 108
NdeII GATC 8 cut(s) 209, 390, 425, 455, 553, 669, 799, 913
NlaIII CATG 8 cut(s) 203, 229, 244, 314, 490, 617, 712, 768
NmuCI GTSAC 1 cut(s) 601
NspI RCATGY 1 cut(s) 768
PagI TCATGA 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 426
PctI GAATGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 524
PfeI GAWTC 3 cut(s) 8, 299, 694
PflMI CCANNNNNTGG 1 cut(s) 840
PpuMI RGGWCCY 1 cut(s) 742
PshBI ATTAAT 1 cut(s) 827
Psp5II RGGWCCY 1 cut(s) 742
Psp6I CCWGG 2 cut(s) 205, 508
PspGI CCWGG 2 cut(s) 205, 508
PspPI GGNCC 3 cut(s) 196, 705, 742
PspPPI RGGWCCY 1 cut(s) 742
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 2 cut(s) 367, 501
RsaNI GTAC 2 cut(s) 366, 500
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 4 cut(s) 54, 326, 720, 827
Sau3AI GATC 8 cut(s) 209, 390, 425, 455, 553, 669, 799, 913
Sau96I GGNCC 3 cut(s) 196, 705, 742
ScaI AGTACT 1 cut(s) 501
ScrFI CCNGG 2 cut(s) 207, 510
SexAI ACCWGGT 1 cut(s) 508
SfaNI GCATC 2 cut(s) 198, 724
SfcI CTRYAG 1 cut(s) 961
SinI GGWCC 2 cut(s) 705, 742
Sse9I AATT 5 cut(s) 145, 660, 724, 824, 828
SsiI CCGC 1 cut(s) 183
SspI AATATT 2 cut(s) 331, 860
SspMI CTAG 2 cut(s) 272, 557
StyD4I CCNGG 2 cut(s) 205, 508
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 2 cut(s) 607, 892
TaqI TCGA 2 cut(s) 389, 424
TasI AATT 5 cut(s) 145, 660, 724, 824, 828
TatI WGTACW 2 cut(s) 365, 499
TfiI GAWTC 3 cut(s) 8, 299, 694
Tru1I TTAA 4 cut(s) 54, 326, 720, 827
Tru9I TTAA 4 cut(s) 54, 326, 720, 827
TscAI CASTG 1 cut(s) 939
TseFI GTSAC 1 cut(s) 601
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 5 cut(s) 125, 134, 214, 229, 870
TspRI CASTG 1 cut(s) 939
Van91I CCANNNNNTGG 1 cut(s) 840
VpaK11BI GGWCC 2 cut(s) 705, 742
VspI ATTAAT 1 cut(s) 827
XapI RAATTY 1 cut(s) 660
XceI RCATGY 1 cut(s) 768
XcmI CCANNNNNNNNNTGG 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 524
XspI CTAG 2 cut(s) 272, 557
ZrmI AGTACT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.