Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0017746

Physical Location & Seq

Genomic Coordinates Forward (+)

52709901 .. 52716196

Gene Structure 6296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029986

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCAGATCCGAACAAATCCCACTTAGTACCATCGGTTTTCATTGATCACGATGAAAATGGCCATGGCGGCAACGGTAACTTCATGGATGAAGTTGATGGTTCAAGGAATATAGACAATTACGAGTGCAGTGCGCAAGATTATGGTTATACGACAGGTGGCCAAATTAATACACAAATTACAACAACCAAATTTCGAGCTGCTGATATTTCTATAGGCTCAAGTTCAGGGAAGGTTGACTCTGAGGACGAGCTTACTGAATCTTCCAACAATGATTGTGCACTTGAAAATTGCCTGGCAAGTTATGTCCAAGCGATCTTTGCACAGCATCGCGCTATATTCGACTATAGTGGATGGCTAAGATCTGATCATATGGCTTCATCAACAGAACTATTATTCGGCCGCAATCAATGGCAGATTAATTTAACTGATCTGTTTCCACCCCACCATTATAACTCGGTGGTGTACTGGAGGACAAAAGTAGCCGAAGCTTCTAAGATCCAAAGACCAATGTGGACAGTGTCACACATGATGACTTTGTCACCCATGGAGAAAGTTATTAGTTACTACCGTGCTTCGAAGGTGGCTGACAACTTGAATGATGAGGATTTGCGTTGTTTCTTGGAGGAACAGCTGTGCAAGGAGAAAGCAGGGCTGTCAGAGAAAACTATTGCAATGCGTTTAAAAACAAAGGTTTATGTAGCATCGAAAGTGGAGGAAATTTGTAGTATTTGCATGGCCGGATACAAGGACCGTGACAAGGTTGCGAGTTTATACTATTGCTGTCATGAGTATCACGAAGAGTGCATAAAGGAGTGGCTTCTCAAGAGCAACCTCTGCCCCATGTGTAGAGCATTAGCTATAATCCCGGAAGATTACCCCTGTTGGGAAGCTGATGCTTCTCAGGAGGGACTATATAAAATAAAGGACTTCCCCCGGCCGATTCCAACAACTCGTGTTTGTAACTCTTTCCAGGCAGTTGTAAATATACGAAGCTTTCCTGATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

337

Amino Acids

38.23

Weight (kDa)

5.34

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	237 - 284	2.7e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	242 - 284	4.4e-11	Ring finger domain
zf-C3HC4_2	PF13923	242 - 283	4.7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017746)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G181200_v2.0.a1 Prupe.2G181200_v2.0.a1 Prupe.2G181200_v2.0.a1 Prupe.2G181200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0327571
rosa_laevigata	RLG00000029986
rosa_roxburghii	Rroxscaffold_4G00322570
rosa_rugosa	Rorug01G0068300
rosa_samantha	Rh1AG085400 Rh1BG067600 Rh1BG067800 Rh1DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
Acc16I	TGCGCA	1 cut(s)	135
AccII	CGCG	1 cut(s)	333
AciI	CCGC	2 cut(s)	69, 403
AclWI	GGATC	2 cut(s)	2, 493
AcoI	YGGCCR	5 cut(s)	61, 160, 400, 738, 938
AcsI	RAATTY	2 cut(s)	191, 720
AfaI	GTAC	2 cut(s)	30, 467
AfiI	CCNNNNNNNGG	2 cut(s)	760, 886
AgsI	TTSAA	3 cut(s)	105, 287, 598
AjnI	CCWGG	2 cut(s)	294, 972
AluBI	AGCT	7 cut(s)	200, 253, 491, 634, 860, 893, 996
AluI	AGCT	7 cut(s)	200, 253, 491, 634, 860, 893, 996
Alw21I	GWGCWC	1 cut(s)	283
Alw44I	GTGCAC	1 cut(s)	279
AlwI	GGATC	2 cut(s)	2, 493
AoxI	GGCC	5 cut(s)	61, 160, 400, 738, 938
ApaLI	GTGCAC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	191, 720
AseI	ATTAAT	2 cut(s)	168, 420
AspLEI	GCGC	2 cut(s)	136, 335
AspS9I	GGNCC	1 cut(s)	751
AsuC2I	CCSGG	2 cut(s)	869, 937
AsuHPI	GGTGA	1 cut(s)	534
AsuII	TTCGAA	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	751
BaeGI	GKGCMC	1 cut(s)	283
BalI	TGGCCA	2 cut(s)	63, 162
BauI	CACGAG	1 cut(s)	954
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	3 cut(s)	40, 92, 348
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BciT130I	CCWGG	2 cut(s)	296, 974
BciVI	GTATCC	1 cut(s)	737
BclI	TGATCA	2 cut(s)	46, 367
BcnI	CCSGG	2 cut(s)	869, 937
BfmI	CTRYAG	2 cut(s)	213, 346
BfuI	GTATCC	1 cut(s)	737
BglI	GCCNNNNNGGC	1 cut(s)	69
BglII	AGATCT	1 cut(s)	362
BisI	GCNGC	3 cut(s)	70, 201, 403
BlsI	GCNGC	3 cut(s)	71, 202, 404
Bme1390I	CCNGG	4 cut(s)	296, 869, 937, 974
Bme18I	GGWCC	1 cut(s)	751
BmgT120I	GGNCC	1 cut(s)	751
BmrFI	CCNGG	4 cut(s)	296, 869, 937, 974
BmsI	GCATC	3 cut(s)	337, 713, 886
BpmI	CTGGAG	1 cut(s)	490
Bpu14I	TTCGAA	1 cut(s)	578
BpuEI	CTTGAG	2 cut(s)	205, 809
BpuMI	CCSGG	2 cut(s)	869, 937
Bsa29I	ATCGAT	1 cut(s)	1006
BsaJI	CCNNGG	3 cut(s)	64, 546, 935
Bsc4I	CCNNNNNNNGG	2 cut(s)	760, 886
Bse1I	ACTGG	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	681
BseBI	CCWGG	2 cut(s)	296, 974
BseCI	ATCGAT	1 cut(s)	1006
BseDI	CCNNGG	3 cut(s)	64, 546, 935
BseGI	GGATG	2 cut(s)	94, 359
BseLI	CCNNNNNNNGG	2 cut(s)	760, 886
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	2 cut(s)	234, 917
BseNI	ACTGG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	283
BseX3I	CGGCCG	2 cut(s)	400, 938
BseXI	GCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	333
Bsh1285I	CGRYCG	2 cut(s)	403, 941
BshFI	GGCC	5 cut(s)	63, 162, 402, 740, 940
BshVI	ATCGAT	1 cut(s)	1006
BsiEI	CGRYCG	2 cut(s)	403, 941
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	3 cut(s)	741, 869, 937
BslFI	GGGAC	1 cut(s)	924
BslI	CCNNNNNNNGG	2 cut(s)	760, 886
BsmFI	GGGAC	1 cut(s)	924
BsnI	GGCC	5 cut(s)	63, 162, 402, 740, 940
Bsp119I	TTCGAA	1 cut(s)	578
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	8 cut(s)	7, 46, 315, 362, 367, 430, 498, 1003
Bsp19I	CCATGG	2 cut(s)	64, 546
BspACI	CCGC	2 cut(s)	69, 403
BspANI	GGCC	5 cut(s)	63, 162, 402, 740, 940
BspCNI	CTCAG	2 cut(s)	235, 916
BspDI	ATCGAT	1 cut(s)	1006
BspFNI	CGCG	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	787
BspPI	GGATC	2 cut(s)	2, 493
BspT104I	TTCGAA	1 cut(s)	578
BsrDI	GCAATG	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	473
BssECI	CCNNGG	3 cut(s)	64, 546, 935
BssMI	GATC	8 cut(s)	7, 46, 315, 362, 367, 430, 498, 1003
BssSI	CACGAG	1 cut(s)	954
BssT1I	CCWWGG	2 cut(s)	64, 546
Bst2BI	CACGAG	1 cut(s)	954
Bst2UI	CCWGG	2 cut(s)	296, 974
Bst4CI	ACNGT	4 cut(s)	77, 520, 572, 755
Bst6I	CTCTTC	1 cut(s)	795
BstAPI	GCANNNNNTGC	1 cut(s)	837
BstBI	TTCGAA	1 cut(s)	578
BstDEI	CTNAG	5 cut(s)	25, 243, 359, 495, 903
BstDSI	CCRYGG	2 cut(s)	64, 546
BstF5I	GGATG	2 cut(s)	94, 359
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	136, 335
BstKTI	GATC	8 cut(s)	10, 49, 318, 365, 370, 433, 501, 1006
BstMBI	GATC	8 cut(s)	7, 46, 315, 362, 367, 430, 498, 1003
BstMCI	CGRYCG	2 cut(s)	403, 941
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 320, 837
BstNI	CCWGG	2 cut(s)	296, 974
BstSCI	CCNGG	4 cut(s)	294, 867, 935, 972
BstSFI	CTRYAG	2 cut(s)	213, 346
BstSLI	GKGCMC	1 cut(s)	283
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	3 cut(s)	7, 362, 498
BstYI	RGATCY	3 cut(s)	7, 362, 498
BstZI	CGGCCG	2 cut(s)	400, 938
Bsu15I	ATCGAT	1 cut(s)	1006
BsuI	GTATCC	1 cut(s)	737
BsuRI	GGCC	5 cut(s)	63, 162, 402, 740, 940
BsuTUI	ATCGAT	1 cut(s)	1006
BtgI	CCRYGG	2 cut(s)	64, 546
BtgZI	GCGATG	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	94, 359
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 525
CciI	TCATGA	1 cut(s)	787
CfoI	GCGC	2 cut(s)	136, 335
Cfr13I	GGNCC	1 cut(s)	751
ClaI	ATCGAT	1 cut(s)	1006
Csp6I	GTAC	2 cut(s)	29, 466
CviAII	CATG	7 cut(s)	65, 85, 529, 547, 736, 788, 844
CviQI	GTAC	2 cut(s)	29, 466
DdeI	CTNAG	5 cut(s)	25, 243, 359, 495, 903
DpnI	GATC	8 cut(s)	9, 48, 317, 364, 369, 432, 500, 1005
DpnII	GATC	8 cut(s)	7, 46, 315, 362, 367, 430, 498, 1003
DraI	TTTAAA	1 cut(s)	684
EaeI	YGGCCR	5 cut(s)	61, 160, 400, 738, 938
EagI	CGGCCG	2 cut(s)	400, 938
Eam1104I	CTCTTC	1 cut(s)	795
EarI	CTCTTC	1 cut(s)	795
EclXI	CGGCCG	2 cut(s)	400, 938
Eco130I	CCWWGG	2 cut(s)	64, 546
Eco47I	GGWCC	1 cut(s)	751
Eco52I	CGGCCG	2 cut(s)	400, 938
EcoRII	CCWGG	2 cut(s)	294, 972
EcoT14I	CCWWGG	2 cut(s)	64, 546
ErhI	CCWWGG	2 cut(s)	64, 546
FaeI	CATG	7 cut(s)	68, 88, 532, 550, 739, 791, 847
FaqI	GGGAC	1 cut(s)	924
FatI	CATG	7 cut(s)	64, 84, 528, 546, 735, 787, 843
FauNDI	CATATG	1 cut(s)	372
FbaI	TGATCA	2 cut(s)	46, 367
Fnu4HI	GCNGC	3 cut(s)	70, 201, 403
FokI	GGATG	2 cut(s)	101, 366
Fsp4HI	GCNGC	3 cut(s)	70, 201, 403
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	2 cut(s)	135, 334
GluI	GCNGC	3 cut(s)	70, 201, 403
GsuI	CTGGAG	1 cut(s)	490
HaeIII	GGCC	5 cut(s)	63, 162, 402, 740, 940
HapII	CCGG	3 cut(s)	741, 869, 937
HhaI	GCGC	2 cut(s)	136, 335
Hin1II	CATG	7 cut(s)	68, 88, 532, 550, 739, 791, 847
Hin6I	GCGC	2 cut(s)	134, 333
HinP1I	GCGC	2 cut(s)	134, 333
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	2 cut(s)	489, 994
HinfI	GANTC	3 cut(s)	239, 260, 943
HpaII	CCGG	3 cut(s)	741, 869, 937
HphI	GGTGA	1 cut(s)	534
Hpy166II	GTNNAC	4 cut(s)	238, 281, 466, 516
Hpy188I	TCNGA	4 cut(s)	12, 244, 367, 661
Hpy188III	TCNNGA	6 cut(s)	50, 788, 797, 826, 905, 1001
Hpy8I	GTNNAC	4 cut(s)	238, 281, 466, 516
HpyAV	CCTTC	2 cut(s)	226, 574
HpyCH4III	ACNGT	4 cut(s)	77, 520, 572, 755
HpyCH4V	TGCA	7 cut(s)	129, 281, 323, 639, 674, 735, 807
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 320, 837
HpyF3I	CTNAG	5 cut(s)	25, 243, 359, 495, 903
Hsp92II	CATG	7 cut(s)	68, 88, 532, 550, 739, 791, 847
HspAI	GCGC	2 cut(s)	134, 333
Ksp22I	TGATCA	2 cut(s)	46, 367
Kzo9I	GATC	8 cut(s)	7, 46, 315, 362, 367, 430, 498, 1003
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	3 cut(s)	337, 713, 886
MaeIII	GTNAC	6 cut(s)	77, 522, 540, 563, 755, 962
MalI	GATC	8 cut(s)	9, 48, 317, 364, 369, 432, 500, 1005
MboI	GATC	8 cut(s)	7, 46, 315, 362, 367, 430, 498, 1003
MboII	GAAGA	3 cut(s)	255, 812, 884
MflI	RGATCY	3 cut(s)	7, 362, 498
MhlI	GDGCHC	1 cut(s)	283
MlsI	TGGCCA	2 cut(s)	63, 162
MluCI	AATT	7 cut(s)	118, 165, 177, 191, 289, 421, 720
MluNI	TGGCCA	2 cut(s)	63, 162
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	2 cut(s)	291, 971
MnlI	CCTC	7 cut(s)	238, 465, 598, 619, 709, 845, 901
Mox20I	TGGCCA	2 cut(s)	63, 162
MscI	TGGCCA	2 cut(s)	63, 162
MseI	TTAA	4 cut(s)	168, 420, 425, 683
Msp20I	TGGCCA	2 cut(s)	63, 162
MspA1I	CMGCKG	1 cut(s)	634
MspI	CCGG	3 cut(s)	741, 869, 937
MspR9I	CCNGG	4 cut(s)	296, 869, 937, 974
MvaI	CCWGG	2 cut(s)	296, 974
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	3 cut(s)	69, 320, 837
NciI	CCSGG	2 cut(s)	869, 937
NcoI	CCATGG	2 cut(s)	64, 546
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	8 cut(s)	7, 46, 315, 362, 367, 430, 498, 1003
NlaIII	CATG	7 cut(s)	68, 88, 532, 550, 739, 791, 847
NmuCI	GTSAC	3 cut(s)	522, 540, 755
NsbI	TGCGCA	1 cut(s)	135
NspV	TTCGAA	1 cut(s)	578
PagI	TCATGA	1 cut(s)	787
PfeI	GAWTC	2 cut(s)	260, 943
PflFI	GACNNNGTC	2 cut(s)	520, 538
PfoI	TCCNGGA	1 cut(s)	867
PkrI	GCNGC	3 cut(s)	71, 202, 404
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PshBI	ATTAAT	2 cut(s)	168, 420
PsiI	TTATAA	1 cut(s)	453
Psp6I	CCWGG	2 cut(s)	294, 972
PspGI	CCWGG	2 cut(s)	294, 972
PspPI	GGNCC	1 cut(s)	751
PsuI	RGATCY	3 cut(s)	7, 362, 498
PsyI	GACNNNGTC	2 cut(s)	520, 538
PvuII	CAGCTG	1 cut(s)	634
RsaI	GTAC	2 cut(s)	30, 467
RsaNI	GTAC	2 cut(s)	29, 466
SaqAI	TTAA	4 cut(s)	168, 420, 425, 683
SatI	GCNGC	3 cut(s)	70, 201, 403
Sau3AI	GATC	8 cut(s)	7, 46, 315, 362, 367, 430, 498, 1003
Sau96I	GGNCC	1 cut(s)	751
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	4 cut(s)	296, 869, 937, 974
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	3 cut(s)	337, 713, 886
SfcI	CTRYAG	2 cut(s)	213, 346
SfuI	TTCGAA	1 cut(s)	578
SinI	GGWCC	1 cut(s)	751
SmlI	CTYRAG	2 cut(s)	220, 824
SmoI	CTYRAG	2 cut(s)	220, 824
Sse9I	AATT	7 cut(s)	118, 165, 177, 191, 289, 421, 720
SsiI	CCGC	2 cut(s)	69, 403
StyD4I	CCNGG	4 cut(s)	294, 867, 935, 972
StyI	CCWWGG	2 cut(s)	64, 546
TaaI	ACNGT	4 cut(s)	77, 520, 572, 755
TaqI	TCGA	5 cut(s)	196, 342, 578, 707, 1006
TasI	AATT	7 cut(s)	118, 165, 177, 191, 289, 421, 720
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	2 cut(s)	72, 405
TfiI	GAWTC	2 cut(s)	260, 943
Tru1I	TTAA	4 cut(s)	168, 420, 425, 683
Tru9I	TTAA	4 cut(s)	168, 420, 425, 683
TscAI	CASTG	2 cut(s)	136, 525
TseFI	GTSAC	3 cut(s)	522, 540, 755
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	3 cut(s)	522, 540, 755
TspDTI	ATGAA	5 cut(s)	31, 69, 73, 105, 369
TspRI	CASTG	2 cut(s)	136, 525
Tth111I	GACNNNGTC	2 cut(s)	520, 538
VneI	GTGCAC	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	751
VspI	ATTAAT	2 cut(s)	168, 420
XapI	RAATTY	2 cut(s)	191, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.