Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0017746

Physical Location & Seq

Genomic Coordinates Reverse (-)

10316518 .. 10323232

Gene Structure 6715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG067600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGGTGAAAACATGCAGGCCGGATACAAGGACCGTGACAAGGTTGCGAGTTTATACTATTGTTGTCATGAGTATCACGAAGAGTGCATAAAGGAGTGGCTTCTCAAGAGCAACCTCTGCCCCATGTGTAGAGCATTAGCCATAATCCCGGAAGATTACCCCTGTTGGGAAGCTGATGTGCAGCTACACCAAGCATTCTTTCTGCATTTACATGTGGTTTTGGCGCGAAGATGCTGGCCTTATAAGCAGAAGTGGGCGCGGGCAAGAGGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

91

Amino Acids

10.9

Weight (kDa)

7.61

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	9 - 44	2.4e-09	Ring finger domain
zf-rbx1	PF12678	17 - 44	1.7e-09	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	19 - 43	9.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017746)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G181200_v2.0.a1 Prupe.2G181200_v2.0.a1 Prupe.2G181200_v2.0.a1 Prupe.2G181200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0327571
rosa_laevigata	RLG00000029986
rosa_roxburghii	Rroxscaffold_4G00322570
rosa_rugosa	Rorug01G0068300
rosa_samantha	Rh1AG085400 Rh1BG067600 Rh1BG067800 Rh1DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
AccII	CGCG	2 cut(s)	226, 259
AciI	CCGC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	40, 166
AflIII	ACRYGT	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	2 cut(s)	173, 184
AluI	AGCT	2 cut(s)	173, 184
AoxI	GGCC	2 cut(s)	18, 236
ApeKI	GCWGC	1 cut(s)	181
AspLEI	GCGC	2 cut(s)	226, 259
AspS9I	GGNCC	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	193
BciVI	GTATCC	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 166
BseLI	CCNNNNNNNGG	2 cut(s)	40, 166
BseXI	GCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	200
Bsh1236I	CGCG	2 cut(s)	226, 259
BshFI	GGCC	2 cut(s)	20, 238
BsiSI	CCGG	2 cut(s)	21, 149
BslI	CCNNNNNNNGG	2 cut(s)	40, 166
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	20, 238
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	2 cut(s)	20, 238
BspFNI	CGCG	2 cut(s)	226, 259
BspHI	TCATGA	1 cut(s)	67
Bst4CI	ACNGT	2 cut(s)	35, 273
Bst6I	CTCTTC	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	18, 236, 261
BstFNI	CGCG	2 cut(s)	226, 259
BstHHI	GCGC	2 cut(s)	226, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 244
BstNSI	RCATGY	2 cut(s)	16, 215
BstSCI	CCNGG	1 cut(s)	147
BstUI	CGCG	2 cut(s)	226, 259
BstV1I	GCAGC	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	20, 238
Cac8I	GCNNGC	3 cut(s)	18, 236, 261
CciI	TCATGA	1 cut(s)	67
CfoI	GCGC	2 cut(s)	226, 259
Cfr13I	GGNCC	1 cut(s)	31
CviAII	CATG	4 cut(s)	13, 68, 124, 212
CviJI	RGCY	6 cut(s)	20, 100, 140, 173, 184, 238
CviKI_1	RGCY	6 cut(s)	20, 100, 140, 173, 184, 238
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	31
FaeI	CATG	4 cut(s)	16, 71, 127, 215
FaiI	YATR	8 cut(s)	14, 55, 69, 89, 125, 143, 213, 243
FatI	CATG	4 cut(s)	12, 67, 123, 211
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	182
GlaI	GCGC	2 cut(s)	225, 258
GluI	GCNGC	1 cut(s)	182
HaeIII	GGCC	2 cut(s)	20, 238
HapII	CCGG	2 cut(s)	21, 149
HhaI	GCGC	2 cut(s)	226, 259
Hin1II	CATG	4 cut(s)	16, 71, 127, 215
Hin6I	GCGC	2 cut(s)	224, 257
HinP1I	GCGC	2 cut(s)	224, 257
HpaII	CCGG	2 cut(s)	21, 149
HphI	GGTGA	1 cut(s)	17
Hpy188III	TCNNGA	3 cut(s)	68, 77, 106
HpyCH4III	ACNGT	2 cut(s)	35, 273
HpyCH4V	TGCA	4 cut(s)	16, 87, 181, 205
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 244
Hsp92II	CATG	4 cut(s)	16, 71, 127, 215
HspAI	GCGC	2 cut(s)	224, 257
LpnPI	CCDG	5 cut(s)	2, 34, 162, 175, 220
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	35
MboII	GAAGA	3 cut(s)	92, 164, 240
MnlI	CCTC	2 cut(s)	125, 260
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	2 cut(s)	21, 149
MspR9I	CCNGG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	194
MvnI	CGCG	2 cut(s)	226, 259
MwoI	GCNNNNNNNGC	2 cut(s)	117, 244
NciI	CCSGG	1 cut(s)	149
NlaIII	CATG	4 cut(s)	16, 71, 127, 215
NmuCI	GTSAC	1 cut(s)	35
NspI	RCATGY	2 cut(s)	16, 215
PagI	TCATGA	1 cut(s)	67
PciI	ACATGT	1 cut(s)	211
PctI	GAATGC	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	183
PscI	ACATGT	1 cut(s)	211
PsiI	TTATAA	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	210
SatI	GCNGC	1 cut(s)	182
Sau96I	GGNCC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	4 cut(s)	45, 117, 175, 186
SfaNI	GCATC	1 cut(s)	221
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SsiI	CCGC	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	35, 273
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	31
XceI	RCATGY	2 cut(s)	16, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.