Rorug01G0068300

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0017746
Physical Location & Seq
Forward (+)
11132368 .. 11133126
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0068300.1

Sequence Viewer

Length: 339 bp
ATGTTACTGCTTGTTTCCTTGGTCAGCATTGTTTGCGCCCATGTGGCTGGAGTTTACATGCTTCTTGTGTGGTCTGCATTGCTCATTGCCTTGTTTGTGACATACTGCAATTCTTCTGCTTGTATCACTGGATCCATCAACGTCTATCATCATTTGCTCATAATGGGATTCTTAATATCTTGGAATGATCAAACTACAAACAAATTTTGCAGCTCAGCTTTTGCAGAGGTAGTTCTTGAGAGACCCCAAAAGAAATGTGTATGTTTTGGACAGATGTTTCCGTTCCATACTTGCATCATTTGCTTCCCCGGTAGTTGGAATATTGGCTCAGTCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

112

Amino Acids

12.38

Weight (kDa)

7.57

Isoelectric Point (pI)

32.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 126, 139
AcsI RAATTY 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 315
AluBI AGCT 2 cut(s) 213, 218
AluI AGCT 2 cut(s) 213, 218
Alw26I GTCTC 1 cut(s) 235
AlwI GGATC 2 cut(s) 126, 139
ApeKI GCWGC 1 cut(s) 210
ApoI RAATTY 1 cut(s) 203
AspLEI GCGC 1 cut(s) 38
AsuC2I CCSGG 1 cut(s) 309
BamHI GGATCC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 222
BccI CCATC 1 cut(s) 143
BclI TGATCA 1 cut(s) 187
BcnI CCSGG 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 235
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 1 cut(s) 211
BlpI GCTNAGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 235
BsaJI CCNNGG 2 cut(s) 18, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 2 cut(s) 77, 84
BseDI CCNNGG 2 cut(s) 18, 307
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMI GCAATG 2 cut(s) 77, 84
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 235
Bso31I GGTCTC 1 cut(s) 235
Bsp143I GATC 2 cut(s) 131, 187
Bsp1720I GCTNAGC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 133
BspPI GGATC 2 cut(s) 126, 139
BspTNI GGTCTC 1 cut(s) 235
BsrDI GCAATG 2 cut(s) 77, 84
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 18, 307
BssMI GATC 2 cut(s) 131, 187
BssT1I CCWWGG 1 cut(s) 18
BstAPI GCANNNNNTGC 2 cut(s) 33, 300
BstDEI CTNAG 2 cut(s) 214, 328
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 2 cut(s) 134, 190
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 2 cut(s) 131, 187
BstMWI GCNNNNNNNGC 3 cut(s) 33, 44, 300
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 131
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 126
CfoI GCGC 1 cut(s) 38
CviAII CATG 2 cut(s) 41, 58
CviJI RGCY 4 cut(s) 47, 213, 218, 327
CviKI_1 RGCY 4 cut(s) 47, 213, 218, 327
DdeI CTNAG 2 cut(s) 214, 328
DpnI GATC 2 cut(s) 133, 189
DpnII GATC 2 cut(s) 131, 187
Eco130I CCWWGG 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 2 cut(s) 44, 61
FaiI YATR 6 cut(s) 42, 59, 103, 161, 262, 288
FatI CATG 2 cut(s) 40, 57
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 211
GlaI GCGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 211
GsuI CTGGAG 1 cut(s) 69
HapII CCGG 1 cut(s) 309
HhaI GCGC 1 cut(s) 38
Hin1II CATG 2 cut(s) 44, 61
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 1 cut(s) 168
HpaII CCGG 1 cut(s) 309
Hpy166II GTNNAC 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 5 cut(s) 77, 108, 210, 224, 294
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 44, 300
HpyF3I CTNAG 2 cut(s) 214, 328
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 2 cut(s) 44, 61
HspAI GCGC 1 cut(s) 36
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 2 cut(s) 131, 187
LpnPI CCDG 3 cut(s) 33, 114, 322
Lsp1109I GCAGC 1 cut(s) 222
LweI GCATC 1 cut(s) 303
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 3, 97
MalI GATC 2 cut(s) 133, 189
MboI GATC 2 cut(s) 131, 187
MboII GAAGA 1 cut(s) 105
MflI RGATCY 1 cut(s) 131
MluCI AATT 2 cut(s) 109, 203
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 1 cut(s) 220
MseI TTAA 1 cut(s) 173
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 309
MwoI GCNNNNNNNGC 3 cut(s) 33, 44, 300
NciI CCSGG 1 cut(s) 309
NdeII GATC 2 cut(s) 131, 187
NlaIII CATG 2 cut(s) 44, 61
NlaIV GGNNCC 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 97
NspI RCATGY 1 cut(s) 61
PfeI GAWTC 1 cut(s) 168
PkrI GCNGC 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 133
PsuI RGATCY 1 cut(s) 131
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 2 cut(s) 131, 187
ScrFI CCNGG 1 cut(s) 309
SetI ASST 4 cut(s) 144, 215, 220, 231
SfaNI GCATC 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 2 cut(s) 109, 203
SspI AATATT 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 1 cut(s) 18
TaiI ACGT 1 cut(s) 144
TasI AATT 2 cut(s) 109, 203
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 97
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 1 cut(s) 133
XapI RAATTY 1 cut(s) 203
XceI RCATGY 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.