Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0017746

Physical Location & Seq

Genomic Coordinates Reverse (-)

14601125 .. 14609061

Gene Structure 7937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG085400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCAGATCCTAACAAATCCCACTTAGTACCATCGGTTTTCATTGATCACGATGAAAATGGCCATGGCGGCAACGGTAACTTCATGGATGAAGTTGATGGTTCAAGTAATATAGACAATTACGAGTGCAGTGCGCAAGATTATGGTTATACGACAGGTGGCCAAATTAATACACAAATTACAACAAGCAAATTTCGAGCTGCTGATATTTCTATAGGCTCAAGTTCAGGGAAGCTCTACTCTGAGGACGAGCTTACTGTACTTGAATATGTCCAAGGGATCTTTCCACAGCATCGCGCTATATTCGACTATAGTGAATCGCTAAGATCTCATATGGCTTCATCAACAGAACTATTATTCGGCCGCAATCAATGGCAGATTAATTTAATTGATCTGTTTCCACCCCACCATTATAACTCGGTGGTGTTCTGGGGGACAAAAGTAGTCGAAGCTTCTAAGATCCAAAGACCAATGTGGACCGTGTCACACATGATGACTTTGTCACCCATGGAGAAAGTTATTAGTTACTACCGTGCTTCGAAGGTGGCTGACAACTTGAATGATGAGGATTTGCGTTGTTTCTTGGAGGAACAGCTGTGCAAGGAGAAAGCTGGGCTGTCAGAGAAAACTATTGCAATGCGTTTAAAAACAAAGGTTTATGTAGCATCGAAAGTGGAGGAAAACCCCGATGCTTGTAGTATTTGCATGGCCGGATACAAGGACCGTGACAAGGTTGCGAGTTTATACTATTGTTGTCATGTGTATCACGAAGAGTGCATAAAGGAGTGGCTTCTCAAGAGCAACCTCTGCCCCATGTGTAGAGCATTAGCTATAATCCCGGAAGATTACCCCTGTTGGGAAGCTGATGTGCAGCTACACCAAGCATTCTTTCTGCATTTACAGTACGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

304

Amino Acids

34.62

Weight (kDa)

5.27

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	231 - 274	1.6e-12	Ring finger domain
zf-rbx1	PF12678	231 - 274	3.4e-07	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	232 - 273	7.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	232 - 260	4e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017746)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G181200_v2.0.a1 Prupe.2G181200_v2.0.a1 Prupe.2G181200_v2.0.a1 Prupe.2G181200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0327571
rosa_laevigata	RLG00000029986
rosa_roxburghii	Rroxscaffold_4G00322570
rosa_rugosa	Rorug01G0068300
rosa_samantha	Rh1AG085400 Rh1BG067600 Rh1BG067800 Rh1DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
Acc16I	TGCGCA	1 cut(s)	135
AccII	CGCG	1 cut(s)	297
AciI	CCGC	2 cut(s)	69, 364
AclWI	GGATC	3 cut(s)	2, 287, 454
AcoI	YGGCCR	4 cut(s)	61, 160, 361, 708
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	3 cut(s)	30, 261, 905
AfiI	CCNNNNNNNGG	2 cut(s)	730, 856
AgsI	TTSAA	3 cut(s)	105, 266, 559
AjuI	GAANNNNNNNTTGG	4 cut(s)	267, 299, 873, 905
AluBI	AGCT	9 cut(s)	200, 235, 253, 452, 595, 611, 830, 863, 874
AluI	AGCT	9 cut(s)	200, 235, 253, 452, 595, 611, 830, 863, 874
AlwI	GGATC	3 cut(s)	2, 287, 454
AoxI	GGCC	4 cut(s)	61, 160, 361, 708
ApeKI	GCWGC	2 cut(s)	200, 871
ApoI	RAATTY	1 cut(s)	191
AseI	ATTAAT	2 cut(s)	168, 381
AspLEI	GCGC	2 cut(s)	136, 299
AspS9I	GGNCC	2 cut(s)	477, 721
AsuC2I	CCSGG	1 cut(s)	839
AsuHPI	GGTGA	1 cut(s)	495
AsuII	TTCGAA	1 cut(s)	539
AvaII	GGWCC	2 cut(s)	477, 721
BalI	TGGCCA	2 cut(s)	63, 162
BbvI	GCAGC	2 cut(s)	187, 883
BccI	CCATC	2 cut(s)	40, 92
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BciVI	GTATCC	1 cut(s)	707
BclI	TGATCA	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	839
BfmI	CTRYAG	2 cut(s)	213, 310
BfuI	GTATCC	1 cut(s)	707
BglI	GCCNNNNNGGC	1 cut(s)	69
BglII	AGATCT	1 cut(s)	326
BisI	GCNGC	4 cut(s)	70, 201, 364, 872
BlsI	GCNGC	4 cut(s)	71, 202, 365, 873
Bme1390I	CCNGG	1 cut(s)	839
Bme18I	GGWCC	2 cut(s)	477, 721
BmgT120I	GGNCC	2 cut(s)	477, 721
BmrFI	CCNGG	1 cut(s)	839
BmsI	GCATC	3 cut(s)	301, 674, 679
Bpu14I	TTCGAA	1 cut(s)	539
BpuEI	CTTGAG	2 cut(s)	205, 779
BpuMI	CCSGG	1 cut(s)	839
BsaJI	CCNNGG	3 cut(s)	64, 274, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	730, 856
Bse3DI	GCAATG	1 cut(s)	642
BseDI	CCNNGG	3 cut(s)	64, 274, 507
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	2 cut(s)	730, 856
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	234
BseX3I	CGGCCG	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	187, 883
BseYI	CCCAGC	1 cut(s)	611
BsgI	GTGCAG	2 cut(s)	148, 890
Bsh1236I	CGCG	1 cut(s)	297
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	4 cut(s)	63, 162, 363, 710
BsiEI	CGRYCG	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	711, 839
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	2 cut(s)	730, 856
BsmFI	GGGAC	1 cut(s)	448
BsmI	GAATGC	1 cut(s)	884
BsnI	GGCC	4 cut(s)	63, 162, 363, 710
Bsp119I	TTCGAA	1 cut(s)	539
Bsp143I	GATC	6 cut(s)	7, 46, 279, 326, 391, 459
Bsp19I	CCATGG	2 cut(s)	64, 507
BspACI	CCGC	2 cut(s)	69, 364
BspANI	GGCC	4 cut(s)	63, 162, 363, 710
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	297
BspPI	GGATC	3 cut(s)	2, 287, 454
BspT104I	TTCGAA	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	642
BssECI	CCNNGG	3 cut(s)	64, 274, 507
BssMI	GATC	6 cut(s)	7, 46, 279, 326, 391, 459
BssT1I	CCWWGG	3 cut(s)	64, 274, 507
Bst4CI	ACNGT	6 cut(s)	77, 259, 481, 533, 725, 903
Bst6I	CTCTTC	1 cut(s)	765
BstAPI	GCANNNNNTGC	1 cut(s)	807
BstBI	TTCGAA	1 cut(s)	539
BstDEI	CTNAG	4 cut(s)	25, 243, 323, 456
BstDSI	CCRYGG	2 cut(s)	64, 507
BstF5I	GGATG	1 cut(s)	94
BstFNI	CGCG	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	136, 299
BstKTI	GATC	6 cut(s)	10, 49, 282, 329, 394, 462
BstMBI	GATC	6 cut(s)	7, 46, 279, 326, 391, 459
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 807
BstSCI	CCNGG	1 cut(s)	837
BstSFI	CTRYAG	2 cut(s)	213, 310
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	187, 883
BstX2I	RGATCY	4 cut(s)	7, 279, 326, 459
BstYI	RGATCY	4 cut(s)	7, 279, 326, 459
BstZI	CGGCCG	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	4 cut(s)	63, 162, 363, 710
BtgI	CCRYGG	2 cut(s)	64, 507
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
CfoI	GCGC	2 cut(s)	136, 299
Cfr13I	GGNCC	2 cut(s)	477, 721
Csp6I	GTAC	3 cut(s)	29, 260, 904
CviAII	CATG	7 cut(s)	65, 85, 490, 508, 706, 758, 814
CviQI	GTAC	3 cut(s)	29, 260, 904
DdeI	CTNAG	4 cut(s)	25, 243, 323, 456
DpnI	GATC	6 cut(s)	9, 48, 281, 328, 393, 461
DpnII	GATC	6 cut(s)	7, 46, 279, 326, 391, 459
DraI	TTTAAA	1 cut(s)	645
EaeI	YGGCCR	4 cut(s)	61, 160, 361, 708
EagI	CGGCCG	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	765
EarI	CTCTTC	1 cut(s)	765
EclXI	CGGCCG	1 cut(s)	361
Eco130I	CCWWGG	3 cut(s)	64, 274, 507
Eco47I	GGWCC	2 cut(s)	477, 721
Eco52I	CGGCCG	1 cut(s)	361
EcoT14I	CCWWGG	3 cut(s)	64, 274, 507
ErhI	CCWWGG	3 cut(s)	64, 274, 507
FaeI	CATG	7 cut(s)	68, 88, 493, 511, 709, 761, 817
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	7 cut(s)	64, 84, 489, 507, 705, 757, 813
FauNDI	CATATG	1 cut(s)	333
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	4 cut(s)	70, 201, 364, 872
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	4 cut(s)	70, 201, 364, 872
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	2 cut(s)	135, 298
GluI	GCNGC	4 cut(s)	70, 201, 364, 872
GsaI	CCCAGC	1 cut(s)	615
HaeIII	GGCC	4 cut(s)	63, 162, 363, 710
HapII	CCGG	2 cut(s)	711, 839
HhaI	GCGC	2 cut(s)	136, 299
Hin1II	CATG	7 cut(s)	68, 88, 493, 511, 709, 761, 817
Hin6I	GCGC	2 cut(s)	134, 297
HinP1I	GCGC	2 cut(s)	134, 297
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	2 cut(s)	711, 839
HphI	GGTGA	1 cut(s)	495
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	2 cut(s)	244, 622
Hpy188III	TCNNGA	3 cut(s)	50, 767, 796
Hpy8I	GTNNAC	1 cut(s)	477
HpyAV	CCTTC	1 cut(s)	535
HpyCH4III	ACNGT	6 cut(s)	77, 259, 481, 533, 725, 903
HpyCH4V	TGCA	7 cut(s)	129, 600, 635, 705, 777, 871, 895
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 807
HpyF3I	CTNAG	4 cut(s)	25, 243, 323, 456
Hsp92II	CATG	7 cut(s)	68, 88, 493, 511, 709, 761, 817
HspAI	GCGC	2 cut(s)	134, 297
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	6 cut(s)	7, 46, 279, 326, 391, 459
LpnPI	CCDG	7 cut(s)	141, 213, 415, 597, 724, 852, 865
Lsp1109I	GCAGC	2 cut(s)	187, 883
LweI	GCATC	3 cut(s)	301, 674, 679
MaeIII	GTNAC	5 cut(s)	77, 483, 501, 524, 725
MalI	GATC	6 cut(s)	9, 48, 281, 328, 393, 461
MboI	GATC	6 cut(s)	7, 46, 279, 326, 391, 459
MboII	GAAGA	2 cut(s)	782, 854
MflI	RGATCY	4 cut(s)	7, 279, 326, 459
MlsI	TGGCCA	2 cut(s)	63, 162
MluCI	AATT	7 cut(s)	118, 165, 177, 191, 382, 387, 909
MluNI	TGGCCA	2 cut(s)	63, 162
MnlI	CCTC	5 cut(s)	238, 559, 580, 670, 815
Mox20I	TGGCCA	2 cut(s)	63, 162
MscI	TGGCCA	2 cut(s)	63, 162
MseI	TTAA	4 cut(s)	168, 381, 386, 644
Msp20I	TGGCCA	2 cut(s)	63, 162
MspA1I	CMGCKG	1 cut(s)	595
MspI	CCGG	2 cut(s)	711, 839
MspR9I	CCNGG	1 cut(s)	839
Mva1269I	GAATGC	1 cut(s)	884
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	69, 807
NciI	CCSGG	1 cut(s)	839
NcoI	CCATGG	2 cut(s)	64, 507
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	6 cut(s)	7, 46, 279, 326, 391, 459
NlaIII	CATG	7 cut(s)	68, 88, 493, 511, 709, 761, 817
NmuCI	GTSAC	3 cut(s)	483, 501, 725
NsbI	TGCGCA	1 cut(s)	135
NspV	TTCGAA	1 cut(s)	539
PctI	GAATGC	1 cut(s)	884
PfeI	GAWTC	1 cut(s)	317
PflFI	GACNNNGTC	2 cut(s)	481, 499
PfoI	TCCNGGA	1 cut(s)	837
PkrI	GCNGC	4 cut(s)	71, 202, 365, 873
PshBI	ATTAAT	2 cut(s)	168, 381
PsiI	TTATAA	1 cut(s)	414
PspFI	CCCAGC	1 cut(s)	611
PspPI	GGNCC	2 cut(s)	477, 721
PsuI	RGATCY	4 cut(s)	7, 279, 326, 459
PsyI	GACNNNGTC	2 cut(s)	481, 499
PvuII	CAGCTG	1 cut(s)	595
RsaI	GTAC	3 cut(s)	30, 261, 905
RsaNI	GTAC	3 cut(s)	29, 260, 904
SaqAI	TTAA	4 cut(s)	168, 381, 386, 644
SatI	GCNGC	4 cut(s)	70, 201, 364, 872
Sau3AI	GATC	6 cut(s)	7, 46, 279, 326, 391, 459
Sau96I	GGNCC	2 cut(s)	477, 721
ScrFI	CCNGG	1 cut(s)	839
SfaNI	GCATC	3 cut(s)	301, 674, 679
SfcI	CTRYAG	2 cut(s)	213, 310
SfuI	TTCGAA	1 cut(s)	539
SinI	GGWCC	2 cut(s)	477, 721
SmlI	CTYRAG	2 cut(s)	220, 794
SmoI	CTYRAG	2 cut(s)	220, 794
Sse9I	AATT	7 cut(s)	118, 165, 177, 191, 382, 387, 909
SsiI	CCGC	2 cut(s)	69, 364
StyD4I	CCNGG	1 cut(s)	837
StyI	CCWWGG	3 cut(s)	64, 274, 507
TaaI	ACNGT	6 cut(s)	77, 259, 481, 533, 725, 903
TaqI	TCGA	5 cut(s)	196, 306, 447, 539, 668
TasI	AATT	7 cut(s)	118, 165, 177, 191, 382, 387, 909
TatI	WGTACW	1 cut(s)	259
TauI	GCSGC	2 cut(s)	72, 366
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	4 cut(s)	168, 381, 386, 644
Tru9I	TTAA	4 cut(s)	168, 381, 386, 644
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	3 cut(s)	483, 501, 725
TseI	GCWGC	2 cut(s)	200, 871
Tsp45I	GTSAC	3 cut(s)	483, 501, 725
TspDTI	ATGAA	5 cut(s)	31, 69, 73, 105, 330
TspRI	CASTG	1 cut(s)	136
Tth111I	GACNNNGTC	2 cut(s)	481, 499
VpaK11BI	GGWCC	2 cut(s)	477, 721
VspI	ATTAAT	2 cut(s)	168, 381
XapI	RAATTY	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.