Rh1BG067800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0017746
Physical Location & Seq
Reverse (-)
10341359 .. 10342653
1295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG067800.1

Sequence Viewer

Length: 420 bp
ATGGCAGATCCTAACAAATCCCACTTAGTACCATCGGTTTTCATTGATCACAATGAAAATGGCCATGGCGGCAACGGTAACTTCATGGATGAAGTTGATGGTTCAAGTAATATAGACAATTACGAGTGCAGTGCGCAAGATTATGGTTATACGACAGGTGGCCAAATTAATACACAAATTACAACAAGCAAATTTCGAGCTGCTGATATTTCTATAGGCTCAAGTTCAGGGAAGCTCGACTCTGAGGACGAGCTTACTGTACTTGAATATGTCCAAGGGATCTTTCCACAGCATCGCGCTATATTCGACTATAGTGAATCGCTAAGATCTCATATGGCTTCATCAACAGAACTATTATTCGGCCGCAATCAATGGCAGATTAATTTAATTGATCTGTACGTTTCCACCCCACCATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.34

Weight (kDa)

4.46

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 418
Acc16I TGCGCA 1 cut(s) 135
AccII CGCG 1 cut(s) 297
AciI CCGC 2 cut(s) 69, 364
AclWI GGATC 2 cut(s) 2, 287
AcoI YGGCCR 3 cut(s) 61, 160, 361
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 3 cut(s) 30, 261, 398
AgsI TTSAA 2 cut(s) 105, 266
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AluBI AGCT 3 cut(s) 200, 235, 253
AluI AGCT 3 cut(s) 200, 235, 253
AlwI GGATC 2 cut(s) 2, 287
AoxI GGCC 3 cut(s) 61, 160, 361
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 191
AseI ATTAAT 2 cut(s) 168, 381
AspLEI GCGC 2 cut(s) 136, 299
BalI TGGCCA 2 cut(s) 63, 162
BbvI GCAGC 1 cut(s) 187
BccI CCATC 2 cut(s) 40, 92
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BclI TGATCA 1 cut(s) 46
BfmI CTRYAG 2 cut(s) 213, 310
BglI GCCNNNNNGGC 1 cut(s) 69
BglII AGATCT 1 cut(s) 326
BisI GCNGC 3 cut(s) 70, 201, 364
BlsI GCNGC 3 cut(s) 71, 202, 365
BmsI GCATC 1 cut(s) 301
BpuEI CTTGAG 1 cut(s) 205
BsaJI CCNNGG 2 cut(s) 64, 274
BseDI CCNNGG 2 cut(s) 64, 274
BseGI GGATG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 234
BseX3I CGGCCG 1 cut(s) 361
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 297
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 3 cut(s) 63, 162, 363
BsiEI CGRYCG 1 cut(s) 364
BsnI GGCC 3 cut(s) 63, 162, 363
Bsp143I GATC 5 cut(s) 7, 46, 279, 326, 391
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 2 cut(s) 69, 364
BspANI GGCC 3 cut(s) 63, 162, 363
BspCNI CTCAG 1 cut(s) 235
BspFNI CGCG 1 cut(s) 297
BspPI GGATC 2 cut(s) 2, 287
BssECI CCNNGG 2 cut(s) 64, 274
BssMI GATC 5 cut(s) 7, 46, 279, 326, 391
BssT1I CCWWGG 2 cut(s) 64, 274
Bst4CI ACNGT 2 cut(s) 77, 259
BstDEI CTNAG 3 cut(s) 25, 243, 323
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 1 cut(s) 94
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 2 cut(s) 136, 299
BstKTI GATC 5 cut(s) 10, 49, 282, 329, 394
BstMBI GATC 5 cut(s) 7, 46, 279, 326, 391
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstSFI CTRYAG 2 cut(s) 213, 310
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 3 cut(s) 7, 279, 326
BstYI RGATCY 3 cut(s) 7, 279, 326
BstZI CGGCCG 1 cut(s) 361
BsuRI GGCC 3 cut(s) 63, 162, 363
BtgI CCRYGG 1 cut(s) 64
BtgZI GCGATG 1 cut(s) 278
BtsCI GGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 136
CfoI GCGC 2 cut(s) 136, 299
Csp6I GTAC 3 cut(s) 29, 260, 397
CviAII CATG 2 cut(s) 65, 85
CviJI RGCY 8 cut(s) 63, 162, 200, 219, 235, 253, 338, 363
CviKI_1 RGCY 8 cut(s) 63, 162, 200, 219, 235, 253, 338, 363
CviQI GTAC 3 cut(s) 29, 260, 397
DdeI CTNAG 3 cut(s) 25, 243, 323
DpnI GATC 5 cut(s) 9, 48, 281, 328, 393
DpnII GATC 5 cut(s) 7, 46, 279, 326, 391
EaeI YGGCCR 3 cut(s) 61, 160, 361
EagI CGGCCG 1 cut(s) 361
EclXI CGGCCG 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 64, 274
Eco52I CGGCCG 1 cut(s) 361
EcoT14I CCWWGG 2 cut(s) 64, 274
ErhI CCWWGG 2 cut(s) 64, 274
FaeI CATG 2 cut(s) 68, 88
FatI CATG 2 cut(s) 64, 84
FauNDI CATATG 1 cut(s) 333
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 70, 201, 364
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 3 cut(s) 70, 201, 364
FspI TGCGCA 1 cut(s) 135
GlaI GCGC 2 cut(s) 135, 298
GluI GCNGC 3 cut(s) 70, 201, 364
HaeIII GGCC 3 cut(s) 63, 162, 363
HhaI GCGC 2 cut(s) 136, 299
Hin1II CATG 2 cut(s) 68, 88
Hin6I GCGC 2 cut(s) 134, 297
HinP1I GCGC 2 cut(s) 134, 297
HinfI GANTC 2 cut(s) 239, 317
Hpy188I TCNGA 1 cut(s) 244
HpyCH4III ACNGT 2 cut(s) 77, 259
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 3 cut(s) 25, 243, 323
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 2 cut(s) 68, 88
HspAI GCGC 2 cut(s) 134, 297
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 5 cut(s) 7, 46, 279, 326, 391
LpnPI CCDG 2 cut(s) 141, 213
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 301
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 77
MalI GATC 5 cut(s) 9, 48, 281, 328, 393
MboI GATC 5 cut(s) 7, 46, 279, 326, 391
MflI RGATCY 3 cut(s) 7, 279, 326
MlsI TGGCCA 2 cut(s) 63, 162
MluCI AATT 6 cut(s) 118, 165, 177, 191, 382, 387
MluNI TGGCCA 2 cut(s) 63, 162
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 1 cut(s) 238
Mox20I TGGCCA 2 cut(s) 63, 162
MscI TGGCCA 2 cut(s) 63, 162
MseI TTAA 3 cut(s) 168, 381, 386
Msp20I TGGCCA 2 cut(s) 63, 162
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 69
NcoI CCATGG 1 cut(s) 64
NdeI CATATG 1 cut(s) 333
NdeII GATC 5 cut(s) 7, 46, 279, 326, 391
NlaIII CATG 2 cut(s) 68, 88
NsbI TGCGCA 1 cut(s) 135
PfeI GAWTC 1 cut(s) 317
PkrI GCNGC 3 cut(s) 71, 202, 365
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PshBI ATTAAT 2 cut(s) 168, 381
PsiI TTATAA 1 cut(s) 418
PsuI RGATCY 3 cut(s) 7, 279, 326
RsaI GTAC 3 cut(s) 30, 261, 398
RsaNI GTAC 3 cut(s) 29, 260, 397
SaqAI TTAA 3 cut(s) 168, 381, 386
SatI GCNGC 3 cut(s) 70, 201, 364
Sau3AI GATC 5 cut(s) 7, 46, 279, 326, 391
SchI GAGTC 1 cut(s) 233
SetI ASST 5 cut(s) 160, 202, 237, 255, 402
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 2 cut(s) 213, 310
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 6 cut(s) 118, 165, 177, 191, 382, 387
SsiI CCGC 2 cut(s) 69, 364
StyI CCWWGG 2 cut(s) 64, 274
TaaI ACNGT 2 cut(s) 77, 259
TaiI ACGT 1 cut(s) 402
TaqI TCGA 3 cut(s) 196, 237, 306
TasI AATT 6 cut(s) 118, 165, 177, 191, 382, 387
TatI WGTACW 1 cut(s) 259
TauI GCSGC 2 cut(s) 72, 366
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 3 cut(s) 168, 381, 386
Tru9I TTAA 3 cut(s) 168, 381, 386
TscAI CASTG 1 cut(s) 136
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 5 cut(s) 31, 69, 73, 105, 330
TspRI CASTG 1 cut(s) 136
VspI ATTAAT 2 cut(s) 168, 381
XapI RAATTY 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.