Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006350

Physical Location & Seq

Genomic Coordinates Reverse (-)

7141274 .. 7145693

Gene Structure 4420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031657

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2331 bp

ATGGCGGGTCTGATCGATCTGAACAGCACGACGGAGGAGGAGGAGGAGACTCCGTCTTCTGGGTCGTCGTCCAATTCCTCCGGCTCTAATGCTTTGATTTCTGGGTCTGTTTGCTTGGAGCTGTGGCACGCTTGTGCTGGACCACTGATTTCTTTGCCCAAGAAAGGCAGTGTGGTGGTTTATCTTCCGCAAGGGCACTTGGAGCAAGTGAATGATTTTCCGCCGTCGGTTTATGATCTTCCTGCTCATCTCTTCTGCCGAGTTGTGGATGTTAAGCTCCATGCGGAGACTGGTAGTGATGAAGTCTACGCACAGGTTCAGTTGGTTCCTGAAAGTGAGGAATTTGAGCACAAACTAGGGGAAGGGGAAACTGATGCAGATGGGGATGAGGATGCTGAGGCATTAGAGAAATCGACTACACCCCATATGTTCTGCAAAACCCTTACTGCTTCCGATACCAGCACTCATGGAGGCTTCTCTGTCCCTCGCCGTGCTGCTGAGGATTGTTTTCCTCCCCTGGATTATAGTCAACAAAGGCCTTCACAGGAGCTGGTGGCAAAGGATCTGCATGGCCTGGAGTGGAGGTTCAGACATATTTATAGGGGGCAGCCGCGCAGGCATTTGCTCACCACTGGATGGAGTGCCTTTGTGAACAAGAAGAAGCTTGTTTCTGGAGATGCTGTGTTGTTTCTGAGGGGTGAGGATGGAGAACTAAGACTTGGAGTTAGAAGGGCAGCCCAAGTAAAAGCTTCTGCTACTTATCCAACTCCTTGTAGCCAGCATTTAAACTATAACTCTGTCGCAGAGGTGGTGGATGCAATAACTATGAAGACTGCTTTTAACGTGTACTACAACCCAAGAGCCAGCTCATCAGAATTCATAATACCTTTCCATAAATTTTTGAGGAGCCTTGGTCATTCCTTCTGTGCTGGAATGAGGTTTAAAATGCGCTTTGAAACAGAAGATGCAGCAGAGCGAAGATACACTGGACTGGTAACTGGGATCAGTGAGTTGGATCCCCTGAGATGGCCTGGTTCCAAATGGAAATGTCTAGTTGTAAGGTGGGATGATATAGATACTAGCAAGCAGCATGGCCGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTATTTCTAATTCCAGTGGCTTAATGGCATCTGGTTTGAAGAGGTCCAGGATGGGCTTATCTGCAGAAAAACAAGAATTTCCAGTTCCTCATGGGATTGGAGCCTCAGACTTTGGGGAATCTTTAAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTTCAGGTTTTGATACTCCTTTTGGTTCTATAGGGGGTCAAAGTCAGCATCCCTCTGAATCGAGGAGAGTCTTTCATGGCTCTATTGGTTCTAGAGGTAATGATCTCAGAAACTCACTTGTGAATTCTGAGATTGCCTCAAAAGGCTTTGGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGCACACCATATGGAAGAGCTCCAGCTACTAGTGAGGCTCGTGAATATGGTTCCCCTGGAATCTTTGATGGTTTTCAGGTGCCAAACTTTAGAAATGGATGGTCTACGATGATGCAGGGCAATAATACACCTATGCACCGAGCTGCTCCTGTACAAGTGTCATCACCATCATCTGTGTTGATGTTCCAGCAAGCAATGAATGCAGGAGCTGAGTTCAATTCCGTATACAATGGTCATAACCAAGAGGAACAGAGAATTATGCAACGCAATCCTTATTCTGAATCAGATGGGGGAAAGCCAACATCATCCTCATTCTGTGAACGGAGCTTCAGCAGGGAAGGTCATGGAGGCATGAATTCTTTTCAACATGCTATTTCACATCCTCCTCATTCAAGTCAGTCTTCATTGAGAGGTAGTCAAGACATGGTTTCATCATGCAAAAGTAGCTGCAGACTCTTTGGTTTCTCACTGTCTGAGGAAACACATGCCCCAAATAAAGTGGACAACTCCACCTCAGTTGCATCTACATTAGATCCTGGAGTTTCTTTGTTCCCCACTGTTGAACCACGGTTTCATTCAAAGCCTCCTTTGATGTCTGCAGCAGTTGGAATTCCCTGTACCAAATTGAAAATTTTTACGTTCAGGAATGGGCTTTTGAGTGGCGTGGAGAAAGGATGGAAAGTTGTTTACAAGGATAGTGACAACGACGCAGGGCTTGTTGGGATGTTCCACGGAAGAATTGCTACCACAATATTATGTAAGAAGTACGAGAGTGAAGACTCTTGGCGCCGGAGGTTTTTCTCAGGTTCTGCGTGTGTTGTGTTTTATGTAACTGAACTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009850 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010022 GO:0010033 GO:0010050 GO:0010073 GO:0010158 GO:0010468 GO:0010556 GO:0010582 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

777

Amino Acids

85.38

Weight (kDa)

6.38

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	144 - 245	2.2e-23	B3 DNA binding domain
BRWD_AD	PF25313	273 - 375	3.5e-06	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	293 - 375	7.9e-34	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33860 AT2G33860
fragaria_vesca	FvH4_3g08450 FvH4_3g08450 FvH4_3g08450 FvH4_3g08450 FvH4_3g08450 FvH4_3g08450
malus_domestica	MD05G1309400.v1.1 MD10G1287900.v1.1
prunus_persica	Prupe.4G053800_v2.0.a1 Prupe.4G053800_v2.0.a1 Prupe.4G053800_v2.0.a1
pyrus_communis	pycom05g28570 pycom10g24090
rosa_chinensis	RchiOBHm_Chr5g0009381
rosa_laevigata	RLG00000031657
rosa_multiflora	Rmu_sc0002711.1_g000019
rosa_roxburghii	Rroxscaffold_1G00066710 Rroxscaffold_1G00067410
rosa_rugosa	Rorug04G0442500
rosa_samantha	Rh5AG073100 Rh5AG073700 Rh5BG069500 Rh5CG081900 Rh5DG069800
rosa_wichuraiana	Rw5G006830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1564, 2271
AccB7I	CCANNNNNTGG	1 cut(s)	636
AccI	GTMKAC	3 cut(s)	306, 1589, 1710
AccII	CGCG	1 cut(s)	613
AciI	CCGC	5 cut(s)	5, 188, 221, 284, 611
AclWI	GGATC	5 cut(s)	570, 1010, 1010, 1023, 2012
AcoI	YGGCCR	1 cut(s)	1093
AcsI	RAATTY	9 cut(s)	341, 875, 896, 1205, 1284, 1408, 1840, 2094, 2115
AcuI	CTGAAG	1 cut(s)	1798
AcyI	GRCGYC	1 cut(s)	2272
AfaI	GTAC	4 cut(s)	848, 1638, 2104, 2252
AfiI	CCNNNNNNNGG	5 cut(s)	59, 164, 265, 636, 1026
AflIII	ACRYGT	1 cut(s)	843
AgsI	TTSAA	8 cut(s)	956, 1168, 1702, 1850, 1878, 2048, 2064, 2113
AhlI	ACTAGT	1 cut(s)	1514
AjnI	CCWGG	6 cut(s)	516, 573, 1030, 1175, 1540, 2020
AjuI	GAANNNNNNNTTGG	2 cut(s)	702, 734
AleI	CACNNNNGTG	1 cut(s)	132
AloI	GAACNNNNNNTCC	2 cut(s)	569, 601
Alw21I	GWGCWC	2 cut(s)	351, 1507
Alw26I	GTCTC	2 cut(s)	41, 281
AlwI	GGATC	5 cut(s)	570, 1010, 1010, 1023, 2012
AlwNI	CAGNNNCTG	3 cut(s)	550, 1694, 2294
AoxI	GGCC	4 cut(s)	536, 571, 1028, 1093
ApeKI	GCWGC	8 cut(s)	494, 607, 734, 968, 1087, 1628, 1932, 2084
ApoI	RAATTY	9 cut(s)	341, 875, 896, 1205, 1284, 1408, 1840, 2094, 2115
Asp700I	GAANNNNTTC	1 cut(s)	1479
AspLEI	GCGC	3 cut(s)	615, 951, 2274
AspS9I	GGNCC	2 cut(s)	140, 1173
AsuC2I	CCSGG	1 cut(s)	1097
AsuHPI	GGTGA	4 cut(s)	619, 710, 1448, 1641
AvaII	GGWCC	2 cut(s)	140, 1173
BaeGI	GKGCMC	1 cut(s)	198
BamHI	GGATCC	1 cut(s)	1015
BanI	GGYRCC	2 cut(s)	1564, 2271
BanII	GRGCYC	1 cut(s)	1507
BarI	GAAGNNNNNNTAC	2 cut(s)	2212, 2244
BauI	CACGAG	1 cut(s)	1524
BbsI	GAAGAC	4 cut(s)	48, 836, 1878, 2268
Bbv12I	GWGCWC	2 cut(s)	351, 1507
BbvCI	CCTCAGC	2 cut(s)	396, 498
BbvI	GCAGC	8 cut(s)	481, 619, 746, 980, 1099, 1615, 1919, 2096
BceAI	ACGGC	2 cut(s)	208, 474
BciT130I	CCWGG	6 cut(s)	518, 575, 1032, 1177, 1542, 2022
BcnI	CCSGG	1 cut(s)	1097
BcoDI	GTCTC	2 cut(s)	41, 281
BcuI	ACTAGT	1 cut(s)	1514
BfaI	CTAG	5 cut(s)	356, 1052, 1080, 1377, 1515
BfmI	CTRYAG	4 cut(s)	1191, 1314, 1933, 2082
BfoI	RGCGCY	1 cut(s)	2275
BglI	GCCNNNNNGGC	1 cut(s)	616
BisI	GCNGC	9 cut(s)	495, 608, 611, 735, 969, 1088, 1629, 1933, 2085
BlsI	GCNGC	9 cut(s)	496, 609, 612, 736, 970, 1089, 1630, 1934, 2086
Bme1390I	CCNGG	7 cut(s)	518, 575, 1032, 1097, 1177, 1542, 2022
Bme18I	GGWCC	2 cut(s)	140, 1173
BmgT120I	GGNCC	2 cut(s)	140, 1173
BmiI	GGNNCC	8 cut(s)	327, 908, 1017, 1036, 1231, 1537, 1566, 2273
BmrFI	CCNGG	7 cut(s)	518, 575, 1032, 1097, 1177, 1542, 2022
BmrI	ACTGGG	1 cut(s)	1008
BmsI	GCATC	9 cut(s)	364, 382, 667, 805, 955, 1166, 1342, 1587, 2015
BmuI	ACTGGG	1 cut(s)	1008
BpiI	GAAGAC	4 cut(s)	48, 836, 1878, 2268
BplI	GAGNNNNNCTC	2 cut(s)	1406, 1438
BpmI	CTGGAG	4 cut(s)	596, 693, 1491, 2043
Bpu10I	CCTNAGC	2 cut(s)	396, 498
BpuMI	CCSGG	1 cut(s)	1097
Bsa29I	ATCGAT	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	2272
BsaJI	CCNNGG	6 cut(s)	516, 910, 1106, 1540, 2051, 2215
BsaXI	ACNNNNNCTCC	8 cut(s)	38, 68, 569, 599, 666, 696, 898, 928
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 164, 265, 636, 1026
Bse1I	ACTGG	7 cut(s)	295, 637, 991, 996, 1003, 1143, 1211
Bse3DI	GCAATG	1 cut(s)	1686
BseBI	CCWGG	6 cut(s)	518, 575, 1032, 1177, 1542, 2022
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	6 cut(s)	516, 910, 1106, 1540, 2051, 2215
BseLI	CCNNNNNNNGG	5 cut(s)	59, 164, 265, 636, 1026
BseMI	GCAATG	1 cut(s)	1686
BseNI	ACTGG	7 cut(s)	295, 637, 991, 996, 1003, 1143, 1211
BseRI	GAGGAG	7 cut(s)	50, 53, 56, 59, 919, 1363, 1860
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	8 cut(s)	481, 619, 746, 980, 1099, 1615, 1919, 2096
Bsh1236I	CGCG	1 cut(s)	613
BshFI	GGCC	4 cut(s)	538, 573, 1030, 1095
BshNI	GGYRCC	2 cut(s)	1564, 2271
BshVI	ATCGAT	1 cut(s)	15
BsiHKAI	GWGCWC	2 cut(s)	351, 1507
BsiSI	CCGG	3 cut(s)	81, 1096, 2275
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	5 cut(s)	59, 164, 265, 636, 1026
BsmAI	GTCTC	2 cut(s)	41, 281
BsmFI	GGGAC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	1690
BsnI	GGCC	4 cut(s)	538, 573, 1030, 1095
Bsp1286I	GDGCHC	3 cut(s)	198, 351, 1507
Bsp1407I	TGTACA	1 cut(s)	1636
Bsp143I	GATC	8 cut(s)	12, 16, 235, 562, 1002, 1015, 1387, 2017
Bsp19I	CCATGG	1 cut(s)	1106
BspACI	CCGC	5 cut(s)	5, 188, 221, 284, 611
BspANI	GGCC	4 cut(s)	538, 573, 1030, 1095
BspDI	ATCGAT	1 cut(s)	15
BspFNI	CGCG	1 cut(s)	613
BspLI	GGNNCC	8 cut(s)	327, 908, 1017, 1036, 1231, 1537, 1566, 2273
BspMAI	CTGCAG	3 cut(s)	1195, 1937, 2086
BspPI	GGATC	5 cut(s)	570, 1010, 1010, 1023, 2012
BspQI	GCTCTTC	1 cut(s)	1495
BspT107I	GGYRCC	2 cut(s)	1564, 2271
BsrDI	GCAATG	1 cut(s)	1686
BsrGI	TGTACA	1 cut(s)	1636
BsrI	ACTGG	7 cut(s)	295, 637, 991, 996, 1003, 1143, 1211
BssECI	CCNNGG	6 cut(s)	516, 910, 1106, 1540, 2051, 2215
BssMI	GATC	8 cut(s)	12, 16, 235, 562, 1002, 1015, 1387, 2017
BssNAI	GTATAC	1 cut(s)	1711
BssNI	GRCGYC	1 cut(s)	2272
BssSI	CACGAG	1 cut(s)	1524
BssT1I	CCWWGG	2 cut(s)	910, 1106
Bst1107I	GTATAC	1 cut(s)	1711
Bst2BI	CACGAG	1 cut(s)	1524
Bst2UI	CCWGG	6 cut(s)	518, 575, 1032, 1177, 1542, 2022
Bst4CI	ACNGT	3 cut(s)	1956, 2044, 2055
Bst6I	CTCTTC	3 cut(s)	257, 1163, 1495
BstACI	GRCGYC	1 cut(s)	2272
BstAPI	GCANNNNNTGC	1 cut(s)	1685
BstAUI	TGTACA	1 cut(s)	1636
BstC8I	GCNNGC	6 cut(s)	129, 617, 779, 865, 1085, 1677
BstDSI	CCRYGG	3 cut(s)	1106, 2051, 2215
BstFNI	CGCG	1 cut(s)	613
BstH2I	RGCGCY	1 cut(s)	2275
BstHHI	GCGC	3 cut(s)	615, 951, 2274
BstKTI	GATC	8 cut(s)	15, 19, 238, 565, 1005, 1018, 1390, 2020
BstMAI	GTCTC	2 cut(s)	41, 281
BstMBI	GATC	8 cut(s)	12, 16, 235, 562, 1002, 1015, 1387, 2017
BstMWI	GCNNNNNNNGC	4 cut(s)	202, 616, 1685, 1929
BstNI	CCWGG	6 cut(s)	518, 575, 1032, 1177, 1542, 2022
BstNSI	RCATGY	2 cut(s)	1856, 1973
BstSCI	CCNGG	7 cut(s)	516, 573, 1030, 1095, 1175, 1540, 2020
BstSFI	CTRYAG	4 cut(s)	1191, 1314, 1933, 2082
BstSLI	GKGCMC	1 cut(s)	198
BstUI	CGCG	1 cut(s)	613
BstV1I	GCAGC	8 cut(s)	481, 619, 746, 980, 1099, 1615, 1919, 2096
BstV2I	GAAGAC	4 cut(s)	48, 836, 1878, 2268
BstX2I	RGATCY	3 cut(s)	562, 1015, 2017
BstYI	RGATCY	3 cut(s)	562, 1015, 2017
BstZ17I	GTATAC	1 cut(s)	1711
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	4 cut(s)	538, 573, 1030, 1095
BsuTUI	ATCGAT	1 cut(s)	15
BtgI	CCRYGG	3 cut(s)	1106, 2051, 2215
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	8 cut(s)	143, 175, 630, 984, 1012, 1150, 1952, 2040
Cac8I	GCNNGC	6 cut(s)	129, 617, 779, 865, 1085, 1677
CaiI	CAGNNNCTG	3 cut(s)	550, 1694, 2294
CfoI	GCGC	3 cut(s)	615, 951, 2274
Cfr13I	GGNCC	2 cut(s)	140, 1173
ClaI	ATCGAT	1 cut(s)	15
CseI	GACGC	1 cut(s)	2201
Csp6I	GTAC	4 cut(s)	847, 1637, 2103, 2251
CspCI	CAANNNNNGTGG	4 cut(s)	1965, 1984, 2000, 2019
CviQI	GTAC	4 cut(s)	847, 1637, 2103, 2251
DinI	GGCGCC	1 cut(s)	2273
DpnI	GATC	8 cut(s)	14, 18, 237, 564, 1004, 1017, 1389, 2019
DpnII	GATC	8 cut(s)	12, 16, 235, 562, 1002, 1015, 1387, 2017
DraI	TTTAAA	2 cut(s)	786, 943
EaeI	YGGCCR	1 cut(s)	1093
Eam1104I	CTCTTC	3 cut(s)	257, 1163, 1495
EarI	CTCTTC	3 cut(s)	257, 1163, 1495
EciI	GGCGGA	1 cut(s)	210
Ecl136II	GAGCTC	1 cut(s)	1505
Eco130I	CCWWGG	2 cut(s)	910, 1106
Eco147I	AGGCCT	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	1507
Eco47I	GGWCC	2 cut(s)	140, 1173
Eco53kI	GAGCTC	1 cut(s)	1505
Eco57I	CTGAAG	1 cut(s)	1798
EcoICRI	GAGCTC	1 cut(s)	1505
EcoRI	GAATTC	4 cut(s)	875, 1408, 1840, 2094
EcoRII	CCWGG	6 cut(s)	516, 573, 1030, 1175, 1540, 2020
EcoT14I	CCWWGG	2 cut(s)	910, 1106
EcoT38I	GRGCYC	1 cut(s)	1507
EgeI	GGCGCC	1 cut(s)	2273
EheI	GGCGCC	1 cut(s)	2273
ErhI	CCWWGG	2 cut(s)	910, 1106
FalI	AAGNNNNNCTT	2 cut(s)	1870, 1902
FaqI	GGGAC	1 cut(s)	467
FauNDI	CATATG	2 cut(s)	426, 1495
FblI	GTMKAC	3 cut(s)	306, 1589, 1710
Fnu4HI	GCNGC	9 cut(s)	495, 608, 611, 735, 969, 1088, 1629, 1933, 2085
FriOI	GRGCYC	1 cut(s)	1507
Fsp4HI	GCNGC	9 cut(s)	495, 608, 611, 735, 969, 1088, 1629, 1933, 2085
FspBI	CTAG	5 cut(s)	356, 1052, 1080, 1377, 1515
GlaI	GCGC	3 cut(s)	614, 950, 2273
GluI	GCNGC	9 cut(s)	495, 608, 611, 735, 969, 1088, 1629, 1933, 2085
GsuI	CTGGAG	4 cut(s)	596, 693, 1491, 2043
HaeII	RGCGCY	1 cut(s)	2275
HaeIII	GGCC	4 cut(s)	538, 573, 1030, 1095
HapII	CCGG	3 cut(s)	81, 1096, 2275
HgaI	GACGC	1 cut(s)	2201
HhaI	GCGC	3 cut(s)	615, 951, 2274
Hin1I	GRCGYC	1 cut(s)	2272
Hin6I	GCGC	3 cut(s)	613, 949, 2272
HinP1I	GCGC	3 cut(s)	613, 949, 2272
HincII	GTYRAC	1 cut(s)	530
HindII	GTYRAC	1 cut(s)	530
HindIII	AAGCTT	2 cut(s)	662, 747
HpaII	CCGG	3 cut(s)	81, 1096, 2275
HphI	GGTGA	4 cut(s)	619, 710, 1448, 1641
Hpy166II	GTNNAC	9 cut(s)	307, 530, 652, 847, 1590, 1711, 1805, 1987, 2173
Hpy8I	GTNNAC	9 cut(s)	307, 530, 652, 847, 1590, 1711, 1805, 1987, 2173
Hpy99I	CGWCG	4 cut(s)	34, 70, 229, 2195
HpyAV	CCTTC	7 cut(s)	356, 549, 723, 931, 1258, 1450, 1817
HpyCH4III	ACNGT	3 cut(s)	1956, 2044, 2055
HpyCH4IV	ACGT	2 cut(s)	843, 2123
HpyF10VI	GCNNNNNNNGC	4 cut(s)	202, 616, 1685, 1929
HpySE526I	ACGT	2 cut(s)	843, 2123
Hsp92I	GRCGYC	1 cut(s)	2272
HspAI	GCGC	3 cut(s)	613, 949, 2272
KasI	GGCGCC	1 cut(s)	2271
Kzo9I	GATC	8 cut(s)	12, 16, 235, 562, 1002, 1015, 1387, 2017
LguI	GCTCTTC	1 cut(s)	1495
Lsp1109I	GCAGC	8 cut(s)	481, 619, 746, 980, 1099, 1615, 1919, 2096
LweI	GCATC	9 cut(s)	364, 382, 667, 805, 955, 1166, 1342, 1587, 2015
MaeI	CTAG	5 cut(s)	356, 1052, 1080, 1377, 1515
MaeII	ACGT	2 cut(s)	843, 2123
MaeIII	GTNAC	3 cut(s)	994, 2183, 2314
MalI	GATC	8 cut(s)	14, 18, 237, 564, 1004, 1017, 1389, 2019
MboI	GATC	8 cut(s)	12, 16, 235, 562, 1002, 1015, 1387, 2017
MflI	RGATCY	3 cut(s)	562, 1015, 2017
MhlI	GDGCHC	3 cut(s)	198, 351, 1507
Mly113I	GGCGCC	1 cut(s)	2272
MlyI	GAGTC	4 cut(s)	43, 1362, 1932, 2258
MmeI	TCCRAC	3 cut(s)	788, 993, 2071
MroXI	GAANNNNTTC	1 cut(s)	1479
MseI	TTAA	6 cut(s)	273, 785, 840, 942, 1151, 1253
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	3 cut(s)	81, 1096, 2275
MspR9I	CCNGG	7 cut(s)	518, 575, 1032, 1097, 1177, 1542, 2022
Mva1269I	GAATGC	1 cut(s)	1690
MvaI	CCWGG	6 cut(s)	518, 575, 1032, 1177, 1542, 2022
MvnI	CGCG	1 cut(s)	613
MwoI	GCNNNNNNNGC	4 cut(s)	202, 616, 1685, 1929
NarI	GGCGCC	1 cut(s)	2272
NciI	CCSGG	1 cut(s)	1097
NcoI	CCATGG	1 cut(s)	1106
NdeI	CATATG	2 cut(s)	426, 1495
NdeII	GATC	8 cut(s)	12, 16, 235, 562, 1002, 1015, 1387, 2017
NlaIV	GGNNCC	8 cut(s)	327, 908, 1017, 1036, 1231, 1537, 1566, 2273
NmeAIII	GCCGAG	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	2183
NspI	RCATGY	2 cut(s)	1856, 1973
OliI	CACNNNNGTG	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	1495
PctI	GAATGC	1 cut(s)	1690
PdmI	GAANNNNTTC	1 cut(s)	1479
PfeI	GAWTC	7 cut(s)	1247, 1257, 1343, 1439, 1449, 1545, 1766
PflFI	GACNNNGTC	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	636
PfoI	TCCNGGA	2 cut(s)	1175, 2020
PkrI	GCNGC	9 cut(s)	496, 609, 612, 736, 970, 1089, 1630, 1934, 2086
PleI	GAGTC	4 cut(s)	43, 1361, 1932, 2258
PluTI	GGCGCC	1 cut(s)	2275
PpsI	GAGTC	4 cut(s)	43, 1361, 1932, 2258
Psp124BI	GAGCTC	1 cut(s)	1507
Psp6I	CCWGG	6 cut(s)	516, 573, 1030, 1175, 1540, 2020
PspGI	CCWGG	6 cut(s)	516, 573, 1030, 1175, 1540, 2020
PspN4I	GGNNCC	8 cut(s)	327, 908, 1017, 1036, 1231, 1537, 1566, 2273
PspPI	GGNCC	2 cut(s)	140, 1173
PstI	CTGCAG	3 cut(s)	1195, 1937, 2086
PstNI	CAGNNNCTG	3 cut(s)	550, 1694, 2294
PsuI	RGATCY	3 cut(s)	562, 1015, 2017
PsyI	GACNNNGTC	1 cut(s)	52
RsaI	GTAC	4 cut(s)	848, 1638, 2104, 2252
RsaNI	GTAC	4 cut(s)	847, 1637, 2103, 2251
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	1507
SapI	GCTCTTC	1 cut(s)	1495
SaqAI	TTAA	6 cut(s)	273, 785, 840, 942, 1151, 1253
SatI	GCNGC	9 cut(s)	495, 608, 611, 735, 969, 1088, 1629, 1933, 2085
Sau3AI	GATC	8 cut(s)	12, 16, 235, 562, 1002, 1015, 1387, 2017
Sau96I	GGNCC	2 cut(s)	140, 1173
SchI	GAGTC	4 cut(s)	43, 1362, 1932, 2258
ScrFI	CCNGG	7 cut(s)	518, 575, 1032, 1097, 1177, 1542, 2022
SduI	GDGCHC	3 cut(s)	198, 351, 1507
SfaNI	GCATC	9 cut(s)	364, 382, 667, 805, 955, 1166, 1342, 1587, 2015
SfcI	CTRYAG	4 cut(s)	1191, 1314, 1933, 2082
SfoI	GGCGCC	1 cut(s)	2273
SinI	GGWCC	2 cut(s)	140, 1173
SmiMI	CAYNNNNRTG	1 cut(s)	132
SpeI	ACTAGT	1 cut(s)	1514
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	5 cut(s)	5, 188, 221, 284, 611
SspDI	GGCGCC	1 cut(s)	2271
SspI	AATATT	2 cut(s)	1479, 2238
SspMI	CTAG	5 cut(s)	356, 1052, 1080, 1377, 1515
SstI	GAGCTC	1 cut(s)	1507
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	7 cut(s)	516, 573, 1030, 1095, 1175, 1540, 2020
StyI	CCWWGG	2 cut(s)	910, 1106
TaaI	ACNGT	3 cut(s)	1956, 2044, 2055
TaiI	ACGT	2 cut(s)	846, 2126
TaqI	TCGA	3 cut(s)	15, 413, 1346
TatI	WGTACW	2 cut(s)	846, 1636
TauI	GCSGC	1 cut(s)	613
TfiI	GAWTC	7 cut(s)	1247, 1257, 1343, 1439, 1449, 1545, 1766
Tru1I	TTAA	6 cut(s)	273, 785, 840, 942, 1151, 1253
Tru9I	TTAA	6 cut(s)	273, 785, 840, 942, 1151, 1253
TscAI	CASTG	8 cut(s)	150, 175, 637, 991, 1012, 1150, 1959, 2047
TseFI	GTSAC	1 cut(s)	2183
TseI	GCWGC	8 cut(s)	494, 607, 734, 968, 1087, 1628, 1932, 2084
Tsp45I	GTSAC	1 cut(s)	2183
TspDTI	ATGAA	9 cut(s)	315, 842, 868, 1349, 1697, 1853, 1878, 1905, 2048
TspGWI	ACGGA	5 cut(s)	42, 47, 1696, 1822, 2232
TspRI	CASTG	8 cut(s)	150, 175, 637, 991, 1012, 1150, 1959, 2047
Tth111I	GACNNNGTC	1 cut(s)	52
Van91I	CCANNNNNTGG	1 cut(s)	636
VpaK11BI	GGWCC	2 cut(s)	140, 1173
XapI	RAATTY	9 cut(s)	341, 875, 896, 1205, 1284, 1408, 1840, 2094, 2115
XbaI	TCTAGA	1 cut(s)	1376
XceI	RCATGY	2 cut(s)	1856, 1973
XcmI	CCANNNNNNNNNTGG	2 cut(s)	287, 1150
XmiI	GTMKAC	3 cut(s)	306, 1589, 1710
XmnI	GAANNNNTTC	1 cut(s)	1479
XspI	CTAG	5 cut(s)	356, 1052, 1080, 1377, 1515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.