Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006350

Physical Location & Seq

Genomic Coordinates Forward (+)

88730116 .. 88735037

Gene Structure 4922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2220 bp

ATGGCGGGTCTGATCGATCTGAACAGCACGACAGAGGAGGAGGAGGAGACTCCGTCTTCTGGGTCGTCGTCCAATTCCTCCGGCTCTAATGCTTTGATTTCTGGGTCTGTTTGCTTGGAGCTGTGGCACGCTTGTGCTGGACCACTGATTTCTTTGCCCAAGAAAGGCAGTGTGGTGGTTTATCTTCCACAAGGGCACTTGGAGCAAGTGAATGACTTTCCGGCGTCGGTTTATGATCTTCCTCCTCATCTCTTCTGCCGAGTAGTGGATGTTAAGCTCCATGCGGAGACTGGTAGTGATGAAGTCTACGCACAGGTTCAGTTGGTTCCTGAAAGTGAGGAATTTGAGCACAAACTAGGGGAAGGGGAAACTGATGCAGATGGGGATGAGGATGCTGAGGCATTAGAGAAATCAACTACACCCCATATGTTCTGCAAAACCCTTACTGCTTCCGATACTAGCACTCATGGAGGCTTCTCTGTCCCTCGCCGTGCTGCTGAGGATTGTTTTCCTCCCCTGGATTATAGTCAACAAAGGCCTTCACAGGAGCTGGTGGCAAAGGATCTGCATGGCCTGGAGTGGAGGGGTGAGGATGGAGAACTGAGACTTGGAGTTAGAAGGGCAGCCCAAGTAAAAGCTTCTGCTACTTATCCAACTCCTTGTAGCCAGCATTTAAACTATAACTCTGTCGCAGAGGTGGTGGATGCAATAACTATGAAGACTGCTTTTAACGTGTACTACAATCCAAGAGCCAGCTCATCAGAATTCATAATACCTTTCCATAAATTTTTGAGGAGTCTTGGTCATTCCTTCTGTGCTGGAATGAGGTTTAAAATGCGCTTTGAAACAGAAGATGCAGCAGAGCGAAGATACACTGGACTGGTAACTGGGATCAGTGAGTTGGATCCCCTGAGATGGCCTGGTTCCAAATGGAAATGTCTAGTTGTAAGGTGGGATGATATAGATACTAGTAAGCAGCATGGCCGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTATTTCTAATTCCAGTGGCTTAATGGCATCTGGTTTGAAGAGGTCCAGGATGGGCTTATCTGCAGAAAAACAAGAATTTCCAGTTCCTCATGGGATTGGAGCCTCAGACTTTGGGGAATCTTTAAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTTCGGGTTTTGATACTCCTTTTGGTTCTATAGGGGGTCAAAATCAGCATCCCTCTGAATCGAGGAGAGTCTTTCATGGCTCTATTGGTTCTAGAGGTAATGATCTCAGAAACTCACTTGTGAATTCTGAGATTGCCTCAAAAGGCTTTGGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGCACACCATATGGAAGAGCTCCAGCTACTAGTGAGGCTCGTGAATATGGTTCCCCTGGAATCTTTGATGGTTTTCAGGTGCCAAGCTTTAGAAATGGATGGTCTACGATGATGCAGGGCAATAATACACCTATGCACCGAGCTGCTCCTGTACAAGTGTCATCACCATCATCTGTGTTGATGTTCCAGCAAGCAATGAATGCAGGAGCTGAGTTCAATTCCGTATACAATGGTCATAACCAAGAGGAACAGAGAATTATGCAGCGTAATCCTTATTCTGAATCAGATGGGGGAAAGCCAACATCATCCTCATTCTGTGAACGGAGCTTCAGCAGGGAAGGTCATGTAGGCATGAATTCTTTTCAACATGCTATTTCACATCCTCCTCATTCCAGTCAGTCTTCATTGAGAGGCAGTCAAGACATGGTTGCATCATGCAAAAGTAGCTGCAGACTCTTTGGTTTCTCCCTGTCTGAGGAAACACATGCCCCAAATAAAGTTGACAACTCCACCTCAGTTGCATCTACATTAGATCCTGGAGCTTCTTTGTTCCCCAATGTTGAACCACGGTTTCATTCAAAGCCTCCTTTGATGTCTGCAGCAGTTGGAATTCCCTGTACCAAATTGAGAATTTTTACGTTCAGGAATGGGCTTTTGACTGGCGTGGAGAAAGGATGGAAAGTTGTTTACAAGGATAGTGACAATGACGCAGGGCTTGTTGGGATGTTCCACGGAAGAATTGCTACCACAATATTATGTAAGAAGTACAAGAGTGAAGACTCTTGGCGCCGGAGGTTTTTCTCAGGTTCTGCATGTGTTGTGTTTTATGTAACTGAACTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009850 GO:0009888 GO:0009889 GO:0009908 GO:0009987 GO:0010022 GO:0010033 GO:0010050 GO:0010073 GO:0010158 GO:0010468 GO:0010556 GO:0010582 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

739

Amino Acids

81.08

Weight (kDa)

6.02

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRWD_AD	PF25313	236 - 338	3.2e-06	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	256 - 338	7.4e-34	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33860 AT2G33860
fragaria_vesca	FvH4_3g08450 FvH4_3g08450 FvH4_3g08450 FvH4_3g08450 FvH4_3g08450 FvH4_3g08450
malus_domestica	MD05G1309400.v1.1 MD10G1287900.v1.1
prunus_persica	Prupe.4G053800_v2.0.a1 Prupe.4G053800_v2.0.a1 Prupe.4G053800_v2.0.a1
pyrus_communis	pycom05g28570 pycom10g24090
rosa_chinensis	RchiOBHm_Chr5g0009381
rosa_laevigata	RLG00000031657
rosa_multiflora	Rmu_sc0002711.1_g000019
rosa_roxburghii	Rroxscaffold_1G00066710 Rroxscaffold_1G00067410
rosa_rugosa	Rorug04G0442500
rosa_samantha	Rh5AG073100 Rh5AG073700 Rh5BG069500 Rh5CG081900 Rh5DG069800
rosa_wichuraiana	Rw5G006830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1453, 2160
AccI	GTMKAC	3 cut(s)	306, 1478, 1599
AciI	CCGC	2 cut(s)	5, 284
AclWI	GGATC	5 cut(s)	570, 899, 899, 912, 1901
AcoI	YGGCCR	1 cut(s)	982
AcsI	RAATTY	9 cut(s)	341, 764, 785, 1094, 1173, 1297, 1729, 1983, 2004
AcuI	CTGAAG	1 cut(s)	1687
AcyI	GRCGYC	2 cut(s)	224, 2161
AfaI	GTAC	4 cut(s)	737, 1527, 1993, 2141
AfiI	CCNNNNNNNGG	5 cut(s)	59, 164, 265, 915, 1849
AflIII	ACRYGT	1 cut(s)	732
AgsI	TTSAA	6 cut(s)	845, 1057, 1591, 1739, 1937, 1953
AhlI	ACTAGT	2 cut(s)	968, 1403
AjnI	CCWGG	6 cut(s)	516, 573, 919, 1064, 1429, 1909
AjuI	GAANNNNNNNTTGG	2 cut(s)	591, 623
AleI	CACNNNNGTG	1 cut(s)	132
Alw21I	GWGCWC	2 cut(s)	351, 1396
Alw26I	GTCTC	3 cut(s)	41, 281, 598
AlwI	GGATC	5 cut(s)	570, 899, 899, 912, 1901
AlwNI	CAGNNNCTG	3 cut(s)	550, 1583, 2183
AoxI	GGCC	4 cut(s)	536, 571, 917, 982
ApeKI	GCWGC	8 cut(s)	494, 623, 857, 976, 1517, 1636, 1821, 1973
ApoI	RAATTY	9 cut(s)	341, 764, 785, 1094, 1173, 1297, 1729, 1983, 2004
Asp700I	GAANNNNTTC	1 cut(s)	1368
AspLEI	GCGC	2 cut(s)	840, 2163
AspS9I	GGNCC	2 cut(s)	140, 1062
AsuC2I	CCSGG	1 cut(s)	986
AsuHPI	GGTGA	3 cut(s)	599, 1337, 1530
AvaII	GGWCC	2 cut(s)	140, 1062
BaeGI	GKGCMC	1 cut(s)	198
BamHI	GGATCC	1 cut(s)	904
BanI	GGYRCC	2 cut(s)	1453, 2160
BanII	GRGCYC	1 cut(s)	1396
BarI	GAAGNNNNNNTAC	2 cut(s)	2101, 2133
BauI	CACGAG	1 cut(s)	1413
BbsI	GAAGAC	4 cut(s)	48, 725, 1767, 2157
Bbv12I	GWGCWC	2 cut(s)	351, 1396
BbvCI	CCTCAGC	2 cut(s)	396, 498
BbvI	GCAGC	8 cut(s)	481, 635, 869, 988, 1504, 1648, 1808, 1985
BceAI	ACGGC	1 cut(s)	474
BciT130I	CCWGG	6 cut(s)	518, 575, 921, 1066, 1431, 1911
BcnI	CCSGG	1 cut(s)	986
BcoDI	GTCTC	3 cut(s)	41, 281, 598
BcuI	ACTAGT	2 cut(s)	968, 1403
BfaI	CTAG	6 cut(s)	356, 459, 941, 969, 1266, 1404
BfmI	CTRYAG	4 cut(s)	1080, 1203, 1822, 1971
BfoI	RGCGCY	1 cut(s)	2164
BisI	GCNGC	8 cut(s)	495, 624, 858, 977, 1518, 1637, 1822, 1974
BlsI	GCNGC	8 cut(s)	496, 625, 859, 978, 1519, 1638, 1823, 1975
Bme1390I	CCNGG	7 cut(s)	518, 575, 921, 986, 1066, 1431, 1911
Bme18I	GGWCC	2 cut(s)	140, 1062
BmgT120I	GGNCC	2 cut(s)	140, 1062
BmiI	GGNNCC	7 cut(s)	327, 906, 925, 1120, 1426, 1455, 2162
BmrFI	CCNGG	7 cut(s)	518, 575, 921, 986, 1066, 1431, 1911
BmrI	ACTGGG	1 cut(s)	897
BmsI	GCATC	9 cut(s)	364, 382, 694, 844, 1055, 1231, 1476, 1814, 1904
BmuI	ACTGGG	1 cut(s)	897
BpiI	GAAGAC	4 cut(s)	48, 725, 1767, 2157
BplI	GAGNNNNNCTC	2 cut(s)	1295, 1327
BpmI	CTGGAG	3 cut(s)	596, 1380, 1932
Bpu10I	CCTNAGC	2 cut(s)	396, 498
BpuMI	CCSGG	1 cut(s)	986
Bsa29I	ATCGAT	1 cut(s)	15
BsaHI	GRCGYC	2 cut(s)	224, 2161
BsaJI	CCNNGG	5 cut(s)	516, 995, 1429, 1940, 2104
BsaXI	ACNNNNNCTCC	4 cut(s)	38, 68, 787, 817
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 164, 265, 915, 1849
Bse1I	ACTGG	8 cut(s)	295, 880, 885, 892, 1032, 1100, 1767, 2038
Bse3DI	GCAATG	1 cut(s)	1575
BseBI	CCWGG	6 cut(s)	518, 575, 921, 1066, 1431, 1911
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	5 cut(s)	516, 995, 1429, 1940, 2104
BseLI	CCNNNNNNNGG	5 cut(s)	59, 164, 265, 915, 1849
BseMI	GCAATG	1 cut(s)	1575
BseNI	ACTGG	8 cut(s)	295, 880, 885, 892, 1032, 1100, 1767, 2038
BseRI	GAGGAG	8 cut(s)	50, 53, 56, 59, 234, 808, 1252, 1749
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	8 cut(s)	481, 635, 869, 988, 1504, 1648, 1808, 1985
BshFI	GGCC	4 cut(s)	538, 573, 919, 984
BshNI	GGYRCC	2 cut(s)	1453, 2160
BshVI	ATCGAT	1 cut(s)	15
BsiHKAI	GWGCWC	2 cut(s)	351, 1396
BsiSI	CCGG	4 cut(s)	81, 221, 985, 2164
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	5 cut(s)	59, 164, 265, 915, 1849
BsmAI	GTCTC	3 cut(s)	41, 281, 598
BsmFI	GGGAC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	1579
BsnI	GGCC	4 cut(s)	538, 573, 919, 984
Bsp1286I	GDGCHC	3 cut(s)	198, 351, 1396
Bsp1407I	TGTACA	1 cut(s)	1525
Bsp143I	GATC	8 cut(s)	12, 16, 235, 562, 891, 904, 1276, 1906
Bsp19I	CCATGG	1 cut(s)	995
BspACI	CCGC	2 cut(s)	5, 284
BspANI	GGCC	4 cut(s)	538, 573, 919, 984
BspDI	ATCGAT	1 cut(s)	15
BspLI	GGNNCC	7 cut(s)	327, 906, 925, 1120, 1426, 1455, 2162
BspMAI	CTGCAG	3 cut(s)	1084, 1826, 1975
BspPI	GGATC	5 cut(s)	570, 899, 899, 912, 1901
BspQI	GCTCTTC	1 cut(s)	1384
BspT107I	GGYRCC	2 cut(s)	1453, 2160
BsrDI	GCAATG	1 cut(s)	1575
BsrGI	TGTACA	1 cut(s)	1525
BsrI	ACTGG	8 cut(s)	295, 880, 885, 892, 1032, 1100, 1767, 2038
BssECI	CCNNGG	5 cut(s)	516, 995, 1429, 1940, 2104
BssMI	GATC	8 cut(s)	12, 16, 235, 562, 891, 904, 1276, 1906
BssNAI	GTATAC	1 cut(s)	1600
BssNI	GRCGYC	2 cut(s)	224, 2161
BssSI	CACGAG	1 cut(s)	1413
BssT1I	CCWWGG	1 cut(s)	995
Bst1107I	GTATAC	1 cut(s)	1600
Bst2BI	CACGAG	1 cut(s)	1413
Bst2UI	CCWGG	6 cut(s)	518, 575, 921, 1066, 1431, 1911
Bst4CI	ACNGT	1 cut(s)	1944
Bst6I	CTCTTC	3 cut(s)	257, 1052, 1384
BstACI	GRCGYC	2 cut(s)	224, 2161
BstAPI	GCANNNNNTGC	1 cut(s)	1574
BstAUI	TGTACA	1 cut(s)	1525
BstC8I	GCNNGC	4 cut(s)	129, 668, 754, 1566
BstDSI	CCRYGG	3 cut(s)	995, 1940, 2104
BstENI	CCTNNNNNAGG	1 cut(s)	1847
BstH2I	RGCGCY	1 cut(s)	2164
BstHHI	GCGC	2 cut(s)	840, 2163
BstKTI	GATC	8 cut(s)	15, 19, 238, 565, 894, 907, 1279, 1909
BstMAI	GTCTC	3 cut(s)	41, 281, 598
BstMBI	GATC	8 cut(s)	12, 16, 235, 562, 891, 904, 1276, 1906
BstMWI	GCNNNNNNNGC	3 cut(s)	202, 1574, 1818
BstNI	CCWGG	6 cut(s)	518, 575, 921, 1066, 1431, 1911
BstNSI	RCATGY	3 cut(s)	1745, 1862, 2190
BstSCI	CCNGG	7 cut(s)	516, 573, 919, 984, 1064, 1429, 1909
BstSFI	CTRYAG	4 cut(s)	1080, 1203, 1822, 1971
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	8 cut(s)	481, 635, 869, 988, 1504, 1648, 1808, 1985
BstV2I	GAAGAC	4 cut(s)	48, 725, 1767, 2157
BstX2I	RGATCY	3 cut(s)	562, 904, 1906
BstYI	RGATCY	3 cut(s)	562, 904, 1906
BstZ17I	GTATAC	1 cut(s)	1600
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	4 cut(s)	538, 573, 919, 984
BsuTUI	ATCGAT	1 cut(s)	15
BtgI	CCRYGG	3 cut(s)	995, 1940, 2104
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	5 cut(s)	143, 175, 873, 901, 1039
Cac8I	GCNNGC	4 cut(s)	129, 668, 754, 1566
CaiI	CAGNNNCTG	3 cut(s)	550, 1583, 2183
CfoI	GCGC	2 cut(s)	840, 2163
Cfr13I	GGNCC	2 cut(s)	140, 1062
ClaI	ATCGAT	1 cut(s)	15
CseI	GACGC	2 cut(s)	213, 2090
Csp6I	GTAC	4 cut(s)	736, 1526, 1992, 2140
CspCI	CAANNNNNGTGG	2 cut(s)	1873, 1908
CviQI	GTAC	4 cut(s)	736, 1526, 1992, 2140
DinI	GGCGCC	1 cut(s)	2162
DpnI	GATC	8 cut(s)	14, 18, 237, 564, 893, 906, 1278, 1908
DpnII	GATC	8 cut(s)	12, 16, 235, 562, 891, 904, 1276, 1906
DraI	TTTAAA	2 cut(s)	675, 832
EaeI	YGGCCR	1 cut(s)	982
Eam1104I	CTCTTC	3 cut(s)	257, 1052, 1384
EarI	CTCTTC	3 cut(s)	257, 1052, 1384
Ecl136II	GAGCTC	1 cut(s)	1394
Eco130I	CCWWGG	1 cut(s)	995
Eco147I	AGGCCT	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	1396
Eco47I	GGWCC	2 cut(s)	140, 1062
Eco53kI	GAGCTC	1 cut(s)	1394
Eco57I	CTGAAG	1 cut(s)	1687
EcoICRI	GAGCTC	1 cut(s)	1394
EcoNI	CCTNNNNNAGG	1 cut(s)	1847
EcoRI	GAATTC	4 cut(s)	764, 1297, 1729, 1983
EcoRII	CCWGG	6 cut(s)	516, 573, 919, 1064, 1429, 1909
EcoT14I	CCWWGG	1 cut(s)	995
EcoT38I	GRGCYC	1 cut(s)	1396
EgeI	GGCGCC	1 cut(s)	2162
EheI	GGCGCC	1 cut(s)	2162
ErhI	CCWWGG	1 cut(s)	995
FaqI	GGGAC	1 cut(s)	467
FauNDI	CATATG	2 cut(s)	426, 1384
FblI	GTMKAC	3 cut(s)	306, 1478, 1599
Fnu4HI	GCNGC	8 cut(s)	495, 624, 858, 977, 1518, 1637, 1822, 1974
FriOI	GRGCYC	1 cut(s)	1396
Fsp4HI	GCNGC	8 cut(s)	495, 624, 858, 977, 1518, 1637, 1822, 1974
FspBI	CTAG	6 cut(s)	356, 459, 941, 969, 1266, 1404
GlaI	GCGC	2 cut(s)	839, 2162
GluI	GCNGC	8 cut(s)	495, 624, 858, 977, 1518, 1637, 1822, 1974
GsuI	CTGGAG	3 cut(s)	596, 1380, 1932
HaeII	RGCGCY	1 cut(s)	2164
HaeIII	GGCC	4 cut(s)	538, 573, 919, 984
HapII	CCGG	4 cut(s)	81, 221, 985, 2164
HgaI	GACGC	2 cut(s)	213, 2090
HhaI	GCGC	2 cut(s)	840, 2163
Hin1I	GRCGYC	2 cut(s)	224, 2161
Hin6I	GCGC	2 cut(s)	838, 2161
HinP1I	GCGC	2 cut(s)	838, 2161
HincII	GTYRAC	2 cut(s)	530, 1876
HindII	GTYRAC	2 cut(s)	530, 1876
HindIII	AAGCTT	2 cut(s)	636, 1459
HpaII	CCGG	4 cut(s)	81, 221, 985, 2164
HphI	GGTGA	3 cut(s)	599, 1337, 1530
Hpy166II	GTNNAC	8 cut(s)	307, 530, 736, 1479, 1600, 1694, 1876, 2062
Hpy188III	TCNNGA	9 cut(s)	329, 1150, 1169, 1266, 1342, 1361, 1415, 1793, 2017
Hpy8I	GTNNAC	8 cut(s)	307, 530, 736, 1479, 1600, 1694, 1876, 2062
Hpy99I	CGWCG	2 cut(s)	70, 229
HpyAV	CCTTC	7 cut(s)	356, 549, 612, 820, 1147, 1339, 1706
HpyCH4III	ACNGT	1 cut(s)	1944
HpyCH4IV	ACGT	2 cut(s)	732, 2012
HpyF10VI	GCNNNNNNNGC	3 cut(s)	202, 1574, 1818
HpySE526I	ACGT	2 cut(s)	732, 2012
Hsp92I	GRCGYC	2 cut(s)	224, 2161
HspAI	GCGC	2 cut(s)	838, 2161
KasI	GGCGCC	1 cut(s)	2160
Kzo9I	GATC	8 cut(s)	12, 16, 235, 562, 891, 904, 1276, 1906
LguI	GCTCTTC	1 cut(s)	1384
Lsp1109I	GCAGC	8 cut(s)	481, 635, 869, 988, 1504, 1648, 1808, 1985
LweI	GCATC	9 cut(s)	364, 382, 694, 844, 1055, 1231, 1476, 1814, 1904
MaeI	CTAG	6 cut(s)	356, 459, 941, 969, 1266, 1404
MaeII	ACGT	2 cut(s)	732, 2012
MaeIII	GTNAC	3 cut(s)	883, 2072, 2203
MalI	GATC	8 cut(s)	14, 18, 237, 564, 893, 906, 1278, 1908
MboI	GATC	8 cut(s)	12, 16, 235, 562, 891, 904, 1276, 1906
MflI	RGATCY	3 cut(s)	562, 904, 1906
MhlI	GDGCHC	3 cut(s)	198, 351, 1396
Mly113I	GGCGCC	1 cut(s)	2161
MlyI	GAGTC	5 cut(s)	43, 805, 1251, 1821, 2147
MmeI	TCCRAC	3 cut(s)	677, 882, 1960
MroXI	GAANNNNTTC	1 cut(s)	1368
MseI	TTAA	6 cut(s)	273, 674, 729, 831, 1040, 1142
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	4 cut(s)	81, 221, 985, 2164
MspR9I	CCNGG	7 cut(s)	518, 575, 921, 986, 1066, 1431, 1911
Mva1269I	GAATGC	1 cut(s)	1579
MvaI	CCWGG	6 cut(s)	518, 575, 921, 1066, 1431, 1911
MwoI	GCNNNNNNNGC	3 cut(s)	202, 1574, 1818
NarI	GGCGCC	1 cut(s)	2161
NciI	CCSGG	1 cut(s)	986
NcoI	CCATGG	1 cut(s)	995
NdeI	CATATG	2 cut(s)	426, 1384
NdeII	GATC	8 cut(s)	12, 16, 235, 562, 891, 904, 1276, 1906
NlaIV	GGNNCC	7 cut(s)	327, 906, 925, 1120, 1426, 1455, 2162
NmeAIII	GCCGAG	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	2072
NspI	RCATGY	3 cut(s)	1745, 1862, 2190
OliI	CACNNNNGTG	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	1384
PctI	GAATGC	1 cut(s)	1579
PdmI	GAANNNNTTC	1 cut(s)	1368
PfeI	GAWTC	7 cut(s)	1136, 1146, 1232, 1328, 1338, 1434, 1655
PflFI	GACNNNGTC	1 cut(s)	52
PfoI	TCCNGGA	2 cut(s)	1064, 1909
PkrI	GCNGC	8 cut(s)	496, 625, 859, 978, 1519, 1638, 1823, 1975
PleI	GAGTC	5 cut(s)	43, 804, 1250, 1821, 2147
PluTI	GGCGCC	1 cut(s)	2164
PpsI	GAGTC	5 cut(s)	43, 804, 1250, 1821, 2147
Psp124BI	GAGCTC	1 cut(s)	1396
Psp6I	CCWGG	6 cut(s)	516, 573, 919, 1064, 1429, 1909
PspGI	CCWGG	6 cut(s)	516, 573, 919, 1064, 1429, 1909
PspN4I	GGNNCC	7 cut(s)	327, 906, 925, 1120, 1426, 1455, 2162
PspPI	GGNCC	2 cut(s)	140, 1062
PstI	CTGCAG	3 cut(s)	1084, 1826, 1975
PstNI	CAGNNNCTG	3 cut(s)	550, 1583, 2183
PsuI	RGATCY	3 cut(s)	562, 904, 1906
PsyI	GACNNNGTC	1 cut(s)	52
RsaI	GTAC	4 cut(s)	737, 1527, 1993, 2141
RsaNI	GTAC	4 cut(s)	736, 1526, 1992, 2140
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	1396
SapI	GCTCTTC	1 cut(s)	1384
SaqAI	TTAA	6 cut(s)	273, 674, 729, 831, 1040, 1142
SatI	GCNGC	8 cut(s)	495, 624, 858, 977, 1518, 1637, 1822, 1974
Sau3AI	GATC	8 cut(s)	12, 16, 235, 562, 891, 904, 1276, 1906
Sau96I	GGNCC	2 cut(s)	140, 1062
SchI	GAGTC	5 cut(s)	43, 805, 1251, 1821, 2147
ScrFI	CCNGG	7 cut(s)	518, 575, 921, 986, 1066, 1431, 1911
SduI	GDGCHC	3 cut(s)	198, 351, 1396
SfaNI	GCATC	9 cut(s)	364, 382, 694, 844, 1055, 1231, 1476, 1814, 1904
SfcI	CTRYAG	4 cut(s)	1080, 1203, 1822, 1971
SfoI	GGCGCC	1 cut(s)	2162
SinI	GGWCC	2 cut(s)	140, 1062
SmiMI	CAYNNNNRTG	1 cut(s)	132
SpeI	ACTAGT	2 cut(s)	968, 1403
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	2 cut(s)	5, 284
SspDI	GGCGCC	1 cut(s)	2160
SspI	AATATT	2 cut(s)	1368, 2127
SspMI	CTAG	6 cut(s)	356, 459, 941, 969, 1266, 1404
SstI	GAGCTC	1 cut(s)	1396
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	7 cut(s)	516, 573, 919, 984, 1064, 1429, 1909
StyI	CCWWGG	1 cut(s)	995
TaaI	ACNGT	1 cut(s)	1944
TaiI	ACGT	2 cut(s)	735, 2015
TaqI	TCGA	2 cut(s)	15, 1235
TatI	WGTACW	3 cut(s)	735, 1525, 2139
TfiI	GAWTC	7 cut(s)	1136, 1146, 1232, 1328, 1338, 1434, 1655
Tru1I	TTAA	6 cut(s)	273, 674, 729, 831, 1040, 1142
Tru9I	TTAA	6 cut(s)	273, 674, 729, 831, 1040, 1142
TscAI	CASTG	5 cut(s)	150, 175, 880, 901, 1039
TseFI	GTSAC	1 cut(s)	2072
TseI	GCWGC	8 cut(s)	494, 623, 857, 976, 1517, 1636, 1821, 1973
Tsp45I	GTSAC	1 cut(s)	2072
TspDTI	ATGAA	8 cut(s)	315, 731, 757, 1238, 1586, 1742, 1767, 1937
TspGWI	ACGGA	4 cut(s)	42, 1585, 1711, 2121
TspRI	CASTG	5 cut(s)	150, 175, 880, 901, 1039
Tth111I	GACNNNGTC	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	140, 1062
XagI	CCTNNNNNAGG	1 cut(s)	1847
XapI	RAATTY	9 cut(s)	341, 764, 785, 1094, 1173, 1297, 1729, 1983, 2004
XbaI	TCTAGA	1 cut(s)	1265
XceI	RCATGY	3 cut(s)	1745, 1862, 2190
XcmI	CCANNNNNNNNNTGG	2 cut(s)	287, 1039
XmiI	GTMKAC	3 cut(s)	306, 1478, 1599
XmnI	GAANNNNTTC	1 cut(s)	1368
XspI	CTAG	6 cut(s)	356, 459, 941, 969, 1266, 1404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.