Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0019295

Physical Location & Seq

Genomic Coordinates Forward (+)

10017277 .. 10017648

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031986

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGCAACTTAAGCAAGCAAAATATCACGGTGACCGGCGATGTCATGCACCCCATGACACCTGACCTAGCACAGGGGGGTTGCTCAGCATTAGAAGATGCAGTGATCTTAGGCAGGCATATTGGGACATCCTTTGTACAGAAGGGACGTGTACTTGTACCGAACGAGATTAGTCAAGTACTGGATAAATATGTGGAAGAAAGAAGGTGGCGCGTCGCTTTGTTGATCACAGGGTCATATATAGCAGGATGGGTGCAGCAGGGAGGATCTGGATGGGGTATGAAATTCTTGAGATATTCCATATTTTACAAATTCCTTTTCCTTAAGATGGTTATATACGTAAACTATGACTGTGGGAAACTCGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

124

Amino Acids

13.85

Weight (kDa)

8.95

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019295)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G162100_v2.0.a1
rosa_laevigata	RLG00000031986
rosa_multiflora	Rmu_co8355283.1_g000001 Rmu_ssc0000372.1_g000043
rosa_roxburghii	Rroxscaffold_2G00124210
rosa_rugosa	Rorug02G0223200
rosa_samantha	Rh2AG280000 Rh2BG291600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	213
AclWI	GGATC	1 cut(s)	274
AcsI	RAATTY	2 cut(s)	284, 311
AfaI	GTAC	4 cut(s)	138, 153, 159, 180
AfiI	CCNNNNNNNGG	2 cut(s)	73, 328
AflII	CTTAAG	2 cut(s)	10, 323
AflIII	ACRYGT	1 cut(s)	148
AjiI	CACGTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	2 cut(s)	284, 311
AspLEI	GCGC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	3 cut(s)	243, 267, 322
BclI	TGATCA	1 cut(s)	225
BfaI	CTAG	2 cut(s)	68, 370
BfrI	CTTAAG	2 cut(s)	10, 323
BisI	GCNGC	1 cut(s)	257
BlpI	GCTNAGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	258
BmcAI	AGTACT	1 cut(s)	180
BmgBI	CACGTC	1 cut(s)	149
BmsI	GCATC	1 cut(s)	88
Bpu1102I	GCTNAGC	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	310
BsaAI	YACGTR	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 328
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	186
BseGI	GGATG	3 cut(s)	128, 254, 278
BseLI	CCNNNNNNNGG	2 cut(s)	73, 328
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	139, 159
BslI	CCNNNNNNNGG	2 cut(s)	73, 328
BsmFI	GGGAC	2 cut(s)	139, 159
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	3 cut(s)	105, 225, 266
Bsp1720I	GCTNAGC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	213
BspPI	GGATC	1 cut(s)	274
BspTI	CTTAAG	2 cut(s)	10, 323
BsrFI	RCCGGY	1 cut(s)	35
BsrGI	TGTACA	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	35
BssMI	GATC	3 cut(s)	105, 225, 266
Bst4CI	ACNGT	2 cut(s)	31, 353
BstAFI	CTTAAG	2 cut(s)	10, 323
BstAUI	TGTACA	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	17, 116
BstDEI	CTNAG	2 cut(s)	85, 109
BstEII	GGTNACC	1 cut(s)	31
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	3 cut(s)	128, 254, 278
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	3 cut(s)	108, 228, 269
BstMBI	GATC	3 cut(s)	105, 225, 266
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstPI	GGTNACC	1 cut(s)	31
BstSNI	TACGTA	1 cut(s)	340
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BtgZI	GCGATG	1 cut(s)	54
BtrI	CACGTC	1 cut(s)	149
BtsCI	GGATG	3 cut(s)	128, 254, 278
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	17, 116
CfoI	GCGC	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	35
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	4 cut(s)	137, 152, 158, 179
CviAII	CATG	2 cut(s)	46, 55
CviQI	GTAC	4 cut(s)	137, 152, 158, 179
DdeI	CTNAG	2 cut(s)	85, 109
DpnI	GATC	3 cut(s)	107, 227, 268
DpnII	GATC	3 cut(s)	105, 225, 266
Eco105I	TACGTA	1 cut(s)	340
Eco91I	GGTNACC	1 cut(s)	31
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoO65I	GGTNACC	1 cut(s)	31
FaeI	CATG	2 cut(s)	49, 58
FaqI	GGGAC	2 cut(s)	139, 159
FatI	CATG	2 cut(s)	45, 54
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	3 cut(s)	115, 261, 285
Fsp4HI	GCNGC	1 cut(s)	257
FspBI	CTAG	2 cut(s)	68, 370
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	1 cut(s)	257
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	49, 58
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	152, 343
Hpy188III	TCNNGA	2 cut(s)	270, 289
Hpy8I	GTNNAC	2 cut(s)	152, 343
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	136, 198
HpyCH4III	ACNGT	2 cut(s)	31, 353
HpyCH4IV	ACGT	2 cut(s)	148, 339
HpyCH4V	TGCA	3 cut(s)	49, 101, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	2 cut(s)	85, 109
HpySE526I	ACGT	2 cut(s)	148, 339
Hsp92II	CATG	2 cut(s)	49, 58
HspAI	GCGC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	3 cut(s)	105, 225, 266
LpnPI	CCDG	9 cut(s)	49, 59, 75, 100, 167, 216, 231, 245, 255
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	68, 370
MaeII	ACGT	2 cut(s)	148, 339
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	3 cut(s)	107, 227, 268
MboI	GATC	3 cut(s)	105, 225, 266
MboII	GAAGA	2 cut(s)	107, 209
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	2 cut(s)	284, 311
MnlI	CCTC	1 cut(s)	257
MseI	TTAA	2 cut(s)	11, 324
MspCI	CTTAAG	2 cut(s)	10, 323
MspI	CCGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	12
NdeII	GATC	3 cut(s)	105, 225, 266
NlaIII	CATG	2 cut(s)	49, 58
NmuCI	GTSAC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	258
Ppu21I	YACGTR	1 cut(s)	340
PspEI	GGTNACC	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	4 cut(s)	138, 153, 159, 180
RsaNI	GTAC	4 cut(s)	137, 152, 158, 179
SaqAI	TTAA	2 cut(s)	11, 324
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	3 cut(s)	105, 225, 266
ScaI	AGTACT	1 cut(s)	180
SetI	ASST	5 cut(s)	64, 69, 151, 209, 342
SfaNI	GCATC	1 cut(s)	88
SmlI	CTYRAG	3 cut(s)	10, 289, 323
SmoI	CTYRAG	3 cut(s)	10, 289, 323
SnaBI	TACGTA	1 cut(s)	340
Sse9I	AATT	2 cut(s)	284, 311
SspMI	CTAG	2 cut(s)	68, 370
TaaI	ACNGT	2 cut(s)	31, 353
TaiI	ACGT	2 cut(s)	151, 342
TaqI	TCGA	1 cut(s)	363
TasI	AATT	2 cut(s)	284, 311
TatI	WGTACW	3 cut(s)	136, 151, 178
Tru1I	TTAA	2 cut(s)	11, 324
Tru9I	TTAA	2 cut(s)	11, 324
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	108
Vha464I	CTTAAG	2 cut(s)	10, 323
XagI	CCTNNNNNAGG	1 cut(s)	71
XapI	RAATTY	2 cut(s)	284, 311
XspI	CTAG	2 cut(s)	68, 370
ZrmI	AGTACT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.