Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0019295

Physical Location & Seq

Genomic Coordinates Forward (+)

33869655 .. 33873040

Gene Structure 3386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG280000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCCACCCTCAATCATCATGAAAATATGCAGTGATGCAGTTGGACCGAGAACAGTACATCGAAAAGCCTTGCTCGAGGCTTTGGCAGATGAATTATCGGTTCATTCAATCCGTTTCTCTTCCAAGATCTCTGCTATCGAAACCCAACAACATGAAGGTTCATCCATTGCCATTGTTCACATGGAAAATGGAACTGTCATTAAAGCAAAGGTTCTCATAGGGTGTGACGGGGTTCACTCAGTGGTGTCACGTTGGTTAGGACTCCGTGAACCAGTCTTTTCAGGTCGATCAGCTGTTCGTGGCTTGGCTGTTTATCCTCAAGGCCATGGACTCGAGCAGAATGTGCGACAGTATGTAGGATCAGGCAGAAGGGCTGGCTTCGTTCCCCTCACCGACAAAGAGATCTATTGGTTCTTCTCTGGCATATCTCCAGCTAAAGGGACCACCCTGGCAGAAGATCCTGAAGATATACGAAAAGAAGTACTTGAGAATTATGCCAAGGACCTCCCACCTATATACTTAGATGTTGTGCAGCACGCAGATCTTTCGACATTGACATGGGCTCCGTTGATGTTTAGGTACCCCTGGAACGTAGTATTTGGAAACTTAAGCAAGCAAAACATCACGGTAGCTGGCGATGCCATGCACCCCATGACCCCTGATCTAGCACAGGGGGGTTGCTCAGCATTAGAAGATGCAGTGATCTTAGGCAGGCATATCGGGACATCCTTTGTACAGAATGGACAAGTACTTGTAGTGAAAAAAATGAGTGAAGTACTGGGCAAATACGTAGAAGAAAGAAGGTGGCGCGTCACTTTGTTGATCATGTGGTCCTATATATCCGGATGGGTGCAACAGGGAGGATCTGGATGGGGTATGAAATTCTTGAGAGACACCATATTTTACAAGTTCCTTTTCCTTAAGATGGTAAAATACGTAACTTATGATTGTGGAAAACTCGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

322

Amino Acids

35.92

Weight (kDa)

8.76

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	24 - 276	1.6e-13	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019295)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G162100_v2.0.a1
rosa_laevigata	RLG00000031986
rosa_multiflora	Rmu_co8355283.1_g000001 Rmu_ssc0000372.1_g000043
rosa_roxburghii	Rroxscaffold_2G00124210
rosa_rugosa	Rorug02G0223200
rosa_samantha	Rh2AG280000 Rh2BG291600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	579
AccB1I	GGYRCC	1 cut(s)	579
AccII	CGCG	1 cut(s)	810
AccIII	TCCGGA	1 cut(s)	842
AclWI	GGATC	3 cut(s)	367, 452, 871
AcsI	RAATTY	1 cut(s)	881
AcuI	CTGAAG	1 cut(s)	483
AdeI	CACNNNGTG	1 cut(s)	241
AfaI	GTAC	6 cut(s)	57, 483, 581, 735, 750, 777
AfiI	CCNNNNNNNGG	2 cut(s)	437, 925
AflII	CTTAAG	2 cut(s)	607, 920
AgsI	TTSAA	1 cut(s)	108
AjnI	CCWGG	2 cut(s)	447, 584
AluBI	AGCT	3 cut(s)	293, 434, 632
AluI	AGCT	3 cut(s)	293, 434, 632
Alw26I	GTCTC	1 cut(s)	885
AlwI	GGATC	3 cut(s)	367, 452, 871
Ama87I	CYCGRG	2 cut(s)	74, 332
Aor13HI	TCCGGA	1 cut(s)	842
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	532
ApoI	RAATTY	1 cut(s)	881
Asp718I	GGTACC	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	810
AspS9I	GGNCC	4 cut(s)	44, 441, 502, 831
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	2 cut(s)	74, 332
AvaII	GGWCC	4 cut(s)	44, 441, 502, 831
BanI	GGYRCC	1 cut(s)	579
BanII	GRGCYC	1 cut(s)	565
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	3 cut(s)	840, 864, 919
BcgI	CGANNNNNNTGC	4 cut(s)	528, 562, 700, 734
BciT130I	CCWGG	2 cut(s)	449, 586
BclI	TGATCA	1 cut(s)	822
BcoDI	GTCTC	1 cut(s)	885
BfaI	CTAG	2 cut(s)	665, 967
BfrI	CTTAAG	2 cut(s)	607, 920
BglII	AGATCT	3 cut(s)	126, 402, 541
BisI	GCNGC	1 cut(s)	533
BlpI	GCTNAGC	1 cut(s)	682
BlsI	GCNGC	1 cut(s)	534
BmcAI	AGTACT	3 cut(s)	483, 750, 777
Bme1390I	CCNGG	2 cut(s)	449, 586
Bme18I	GGWCC	4 cut(s)	44, 441, 502, 831
BmeT110I	CYCGRG	2 cut(s)	74, 332
BmgT120I	GGNCC	4 cut(s)	44, 441, 502, 831
BmiI	GGNNCC	3 cut(s)	442, 564, 581
BmrFI	CCNGG	2 cut(s)	449, 586
BmrI	ACTGGG	1 cut(s)	788
BmsI	GCATC	3 cut(s)	25, 628, 685
BmuI	ACTGGG	1 cut(s)	788
BpmI	CTGGAG	1 cut(s)	414
Bpu1102I	GCTNAGC	1 cut(s)	682
BpuEI	CTTGAG	3 cut(s)	303, 506, 907
BsaAI	YACGTR	2 cut(s)	790, 937
BsaJI	CCNNGG	4 cut(s)	325, 447, 498, 584
BsaWI	WCCGGW	1 cut(s)	842
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bsc4I	CCNNNNNNNGG	2 cut(s)	437, 925
Bse1I	ACTGG	2 cut(s)	272, 783
Bse3DI	GCAATG	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	842
BseBI	CCWGG	2 cut(s)	449, 586
BseDI	CCNNGG	4 cut(s)	325, 447, 498, 584
BseGI	GGATG	4 cut(s)	161, 725, 851, 875
BseLI	CCNNNNNNNGG	2 cut(s)	437, 925
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	252, 696
BseNI	ACTGG	2 cut(s)	272, 783
BseXI	GCAGC	1 cut(s)	544
BsgI	GTGCAG	1 cut(s)	551
Bsh1236I	CGCG	1 cut(s)	810
BshFI	GGCC	1 cut(s)	324
BshNI	GGYRCC	1 cut(s)	579
BsiHKCI	CYCGRG	2 cut(s)	74, 332
BsiSI	CCGG	1 cut(s)	843
BslFI	GGGAC	2 cut(s)	454, 736
BslI	CCNNNNNNNGG	2 cut(s)	437, 925
BsmAI	GTCTC	1 cut(s)	885
BsmFI	GGGAC	2 cut(s)	454, 736
BsnI	GGCC	1 cut(s)	324
BsoBI	CYCGRG	2 cut(s)	74, 332
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp13I	TCCGGA	1 cut(s)	842
Bsp1407I	TGTACA	1 cut(s)	733
Bsp1720I	GCTNAGC	1 cut(s)	682
Bsp19I	CCATGG	1 cut(s)	325
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	2 cut(s)	251, 695
BspEI	TCCGGA	1 cut(s)	842
BspFNI	CGCG	1 cut(s)	810
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	3 cut(s)	442, 564, 581
BspPI	GGATC	3 cut(s)	367, 452, 871
BspT107I	GGYRCC	1 cut(s)	579
BspTI	CTTAAG	2 cut(s)	607, 920
BsrDI	GCAATG	1 cut(s)	165
BsrGI	TGTACA	1 cut(s)	733
BsrI	ACTGG	2 cut(s)	272, 783
BssECI	CCNNGG	4 cut(s)	325, 447, 498, 584
BssT1I	CCWWGG	2 cut(s)	325, 498
Bst2UI	CCWGG	2 cut(s)	449, 586
Bst4CI	ACNGT	4 cut(s)	55, 196, 351, 628
Bst6I	CTCTTC	1 cut(s)	124
BstAFI	CTTAAG	2 cut(s)	607, 920
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstAUI	TGTACA	1 cut(s)	733
BstBAI	YACGTR	2 cut(s)	790, 937
BstC8I	GCNNGC	5 cut(s)	376, 537, 614, 634, 713
BstDEI	CTNAG	4 cut(s)	238, 520, 682, 706
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	4 cut(s)	161, 725, 851, 875
BstFNI	CGCG	1 cut(s)	810
BstHHI	GCGC	1 cut(s)	810
BstMAI	GTCTC	1 cut(s)	885
BstMWI	GCNNNNNNNGC	2 cut(s)	343, 638
BstNI	CCWGG	2 cut(s)	449, 586
BstSCI	CCNGG	2 cut(s)	447, 584
BstSNI	TACGTA	2 cut(s)	790, 937
BstUI	CGCG	1 cut(s)	810
BstV1I	GCAGC	1 cut(s)	544
BstX2I	RGATCY	5 cut(s)	126, 402, 457, 541, 863
BstYI	RGATCY	5 cut(s)	126, 402, 457, 541, 863
BsuRI	GGCC	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	651
BtsCI	GGATG	4 cut(s)	161, 725, 851, 875
BtsI	GCAGTG	2 cut(s)	37, 705
BtsIMutI	CAGTG	3 cut(s)	37, 246, 705
Cac8I	GCNNGC	5 cut(s)	376, 537, 614, 634, 713
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	1 cut(s)	810
Cfr13I	GGNCC	4 cut(s)	44, 441, 502, 831
CseI	GACGC	1 cut(s)	799
Csp6I	GTAC	6 cut(s)	56, 482, 580, 734, 749, 776
CviAII	CATG	8 cut(s)	19, 152, 181, 326, 558, 643, 652, 826
CviQI	GTAC	6 cut(s)	56, 482, 580, 734, 749, 776
DdeI	CTNAG	4 cut(s)	238, 520, 682, 706
DraIII	CACNNNGTG	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Eco105I	TACGTA	2 cut(s)	790, 937
Eco130I	CCWWGG	2 cut(s)	325, 498
Eco24I	GRGCYC	1 cut(s)	565
Eco47I	GGWCC	4 cut(s)	44, 441, 502, 831
Eco57I	CTGAAG	1 cut(s)	483
Eco88I	CYCGRG	2 cut(s)	74, 332
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	447, 584
EcoT14I	CCWWGG	2 cut(s)	325, 498
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	2 cut(s)	325, 498
FaeI	CATG	8 cut(s)	22, 155, 184, 329, 561, 646, 655, 829
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	2 cut(s)	454, 736
FatI	CATG	8 cut(s)	18, 151, 180, 325, 557, 642, 651, 825
FbaI	TGATCA	1 cut(s)	822
Fnu4HI	GCNGC	1 cut(s)	533
FokI	GGATG	4 cut(s)	148, 712, 858, 882
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	1 cut(s)	533
FspBI	CTAG	2 cut(s)	665, 967
GlaI	GCGC	1 cut(s)	809
GluI	GCNGC	1 cut(s)	533
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	1 cut(s)	843
HgaI	GACGC	1 cut(s)	799
HhaI	GCGC	1 cut(s)	810
Hin1II	CATG	8 cut(s)	22, 155, 184, 329, 561, 646, 655, 829
Hin6I	GCGC	1 cut(s)	808
HinP1I	GCGC	1 cut(s)	808
HinfI	GANTC	2 cut(s)	261, 330
HpaII	CCGG	1 cut(s)	843
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	3 cut(s)	178, 235, 269
Hpy188III	TCNNGA	6 cut(s)	19, 461, 721, 843, 867, 886
Hpy8I	GTNNAC	3 cut(s)	178, 235, 269
HpyAV	CCTTC	3 cut(s)	149, 363, 795
HpyCH4III	ACNGT	4 cut(s)	55, 196, 351, 628
HpyCH4IV	ACGT	4 cut(s)	250, 591, 789, 936
HpyCH4V	TGCA	6 cut(s)	30, 38, 532, 646, 698, 853
HpyF10VI	GCNNNNNNNGC	2 cut(s)	343, 638
HpyF3I	CTNAG	4 cut(s)	238, 520, 682, 706
HpySE526I	ACGT	4 cut(s)	250, 591, 789, 936
Hsp92II	CATG	8 cut(s)	22, 155, 184, 329, 561, 646, 655, 829
HspAI	GCGC	1 cut(s)	808
Kpn2I	TCCGGA	1 cut(s)	842
KpnI	GGTACC	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	822
LmnI	GCTCC	1 cut(s)	568
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	3 cut(s)	25, 628, 685
MaeI	CTAG	2 cut(s)	665, 967
MaeII	ACGT	4 cut(s)	250, 591, 789, 936
MaeIII	GTNAC	4 cut(s)	224, 246, 811, 937
MboII	GAAGA	6 cut(s)	111, 406, 467, 476, 704, 806
MflI	RGATCY	5 cut(s)	126, 402, 457, 541, 863
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	3 cut(s)	92, 490, 881
MlyI	GAGTC	2 cut(s)	255, 324
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	6 cut(s)	19, 70, 327, 398, 515, 854
MroI	TCCGGA	1 cut(s)	842
MseI	TTAA	3 cut(s)	201, 608, 921
MslI	CAYNNNNRTG	1 cut(s)	556
MspA1I	CMGCKG	1 cut(s)	293
MspCI	CTTAAG	2 cut(s)	607, 920
MspI	CCGG	1 cut(s)	843
MspR9I	CCNGG	2 cut(s)	449, 586
MvaI	CCWGG	2 cut(s)	449, 586
MvnI	CGCG	1 cut(s)	810
MwoI	GCNNNNNNNGC	2 cut(s)	343, 638
NcoI	CCATGG	1 cut(s)	325
NlaIII	CATG	8 cut(s)	22, 155, 184, 329, 561, 646, 655, 829
NlaIV	GGNNCC	3 cut(s)	442, 564, 581
NmuCI	GTSAC	3 cut(s)	224, 246, 811
PaeR7I	CTCGAG	2 cut(s)	74, 332
PagI	TCATGA	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	534
PleI	GAGTC	2 cut(s)	255, 324
PpsI	GAGTC	2 cut(s)	255, 324
Ppu21I	YACGTR	2 cut(s)	790, 937
PpuMI	RGGWCCY	1 cut(s)	502
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	2 cut(s)	447, 584
PspGI	CCWGG	2 cut(s)	447, 584
PspN4I	GGNNCC	3 cut(s)	442, 564, 581
PspPI	GGNCC	4 cut(s)	44, 441, 502, 831
PspPPI	RGGWCCY	1 cut(s)	502
PspXI	VCTCGAGB	2 cut(s)	74, 332
PsuI	RGATCY	5 cut(s)	126, 402, 457, 541, 863
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	6 cut(s)	57, 483, 581, 735, 750, 777
RsaNI	GTAC	6 cut(s)	56, 482, 580, 734, 749, 776
RseI	CAYNNNNRTG	1 cut(s)	556
SaqAI	TTAA	3 cut(s)	201, 608, 921
SatI	GCNGC	1 cut(s)	533
Sau96I	GGNCC	4 cut(s)	44, 441, 502, 831
ScaI	AGTACT	3 cut(s)	483, 750, 777
SchI	GAGTC	2 cut(s)	255, 324
ScrFI	CCNGG	2 cut(s)	449, 586
SduI	GDGCHC	1 cut(s)	565
SfaNI	GCATC	3 cut(s)	25, 628, 685
Sfr274I	CTCGAG	2 cut(s)	74, 332
SinI	GGWCC	4 cut(s)	44, 441, 502, 831
SlaI	CTCGAG	2 cut(s)	74, 332
SmiMI	CAYNNNNRTG	1 cut(s)	556
SmlI	CTYRAG	7 cut(s)	74, 318, 332, 485, 607, 886, 920
SmoI	CTYRAG	7 cut(s)	74, 318, 332, 485, 607, 886, 920
SnaBI	TACGTA	2 cut(s)	790, 937
Sse9I	AATT	3 cut(s)	92, 490, 881
SspMI	CTAG	2 cut(s)	665, 967
StyD4I	CCNGG	2 cut(s)	447, 584
StyI	CCWWGG	2 cut(s)	325, 498
TaaI	ACNGT	4 cut(s)	55, 196, 351, 628
TaiI	ACGT	4 cut(s)	253, 594, 792, 939
TaqI	TCGA	7 cut(s)	61, 75, 138, 286, 333, 548, 960
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	3 cut(s)	92, 490, 881
TatI	WGTACW	5 cut(s)	55, 481, 733, 748, 775
Tru1I	TTAA	3 cut(s)	201, 608, 921
Tru9I	TTAA	3 cut(s)	201, 608, 921
TscAI	CASTG	3 cut(s)	37, 246, 705
TseFI	GTSAC	3 cut(s)	224, 246, 811
TseI	GCWGC	1 cut(s)	532
Tsp45I	GTSAC	3 cut(s)	224, 246, 811
TspDTI	ATGAA	6 cut(s)	35, 92, 105, 150, 168, 893
TspGWI	ACGGA	3 cut(s)	101, 254, 555
TspRI	CASTG	3 cut(s)	37, 246, 705
Vha464I	CTTAAG	2 cut(s)	607, 920
VpaK11BI	GGWCC	4 cut(s)	44, 441, 502, 831
XapI	RAATTY	1 cut(s)	881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XhoI	CTCGAG	2 cut(s)	74, 332
XspI	CTAG	2 cut(s)	665, 967
ZrmI	AGTACT	3 cut(s)	483, 750, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.