Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019295

Physical Location & Seq

Genomic Coordinates Reverse (-)

58340005 .. 58341524

Gene Structure 1520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCCGAGAGCACGAAGATTGGGGGTTCGAGAGGTGTAAGCTTGGAAAAGGATCCCGAAGAAATTAAAAAACAAGTACTTGAGAATTATGCCAAGGACCTCCCACCTTTATACCTAGACGTTGTGCAGCACTCGGATCTTTTAACGTTGACATGGGCTCCGCTGAAATTCAGATATCCATGGCATGTTGTATTTGGGAACTTAAGCAAGCAAAACATCACGGTGACCGGCGATGCCATGCACCCGATGACACCTGATTTAGCACAAGGGGGTGGCTCAGCATTAGAAGATGCCGTGGTCTTAGGCCGACACATAGGGCAATCCTTTGTACAAAATGGACGAGTTCTGGTGCCAAAAGAGAGGGCCGTCGCAATTCATAAATATGTAGAAGAAAGAAGGTGGCACGTTGCTTTGTTGATTGCGGGATCTTATATATCAGGATGGGTGCAACAAGCAGGGTCTGGCTGGGGTAAGAAATTCTTGAGGGATGTCATGTATTACAAGTTCCTTTACCCAAAAATTGTTAGATATATGCACTATGACTGTGGGAAACTTGATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

187

Amino Acids

21.19

Weight (kDa)

9.06

Isoelectric Point (pI)

54.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019295)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G162100_v2.0.a1
rosa_laevigata	RLG00000031986
rosa_multiflora	Rmu_co8355283.1_g000001 Rmu_ssc0000372.1_g000043
rosa_roxburghii	Rroxscaffold_2G00124210
rosa_rugosa	Rorug02G0223200
rosa_samantha	Rh2AG280000 Rh2BG291600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	349
AciI	CCGC	2 cut(s)	161, 422
AclI	AACGTT	1 cut(s)	146
AclWI	GGATC	4 cut(s)	47, 60, 144, 433
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	167, 476
AfaI	GTAC	2 cut(s)	78, 330
AflII	CTTAAG	1 cut(s)	202
AluBI	AGCT	1 cut(s)	42
AluI	AGCT	1 cut(s)	42
Alw21I	GWGCWC	1 cut(s)	14
AlwI	GGATC	4 cut(s)	47, 60, 144, 433
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	3 cut(s)	3, 304, 363
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	2 cut(s)	167, 476
AspS9I	GGNCC	2 cut(s)	97, 363
AsuHPI	GGTGA	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	97
BamHI	GGATCC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	435
BceAI	ACGGC	2 cut(s)	278, 350
BfaI	CTAG	2 cut(s)	116, 562
BfrI	CTTAAG	1 cut(s)	202
BisI	GCNGC	1 cut(s)	128
BlpI	GCTNAGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	129
BmcAI	AGTACT	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	97, 363
BmiI	GGNNCC	3 cut(s)	54, 159, 351
BmsI	GCATC	2 cut(s)	223, 280
Bpu1102I	GCTNAGC	1 cut(s)	277
BpuEI	CTTGAG	2 cut(s)	101, 502
BsaJI	CCNNGG	3 cut(s)	93, 179, 294
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bse118I	RCCGGY	1 cut(s)	227
BseDI	CCNNGG	3 cut(s)	93, 179, 294
BseGI	GGATG	2 cut(s)	446, 493
BseMII	CTCAG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	139
BseYI	CCCAGC	1 cut(s)	465
BsgI	GTGCAG	1 cut(s)	146
BshFI	GGCC	3 cut(s)	5, 306, 365
BshNI	GGYRCC	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	228
BsnI	GGCC	3 cut(s)	5, 306, 365
Bsp1286I	GDGCHC	2 cut(s)	14, 160
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	52, 136, 425
Bsp1720I	GCTNAGC	1 cut(s)	277
Bsp19I	CCATGG	1 cut(s)	179
BspACI	CCGC	2 cut(s)	161, 422
BspANI	GGCC	3 cut(s)	5, 306, 365
BspCNI	CTCAG	1 cut(s)	290
BspLI	GGNNCC	3 cut(s)	54, 159, 351
BspPI	GGATC	4 cut(s)	47, 60, 144, 433
BspT107I	GGYRCC	1 cut(s)	349
BspTI	CTTAAG	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	227
BsrGI	TGTACA	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	3 cut(s)	93, 179, 294
BssMI	GATC	3 cut(s)	52, 136, 425
BssT1I	CCWWGG	2 cut(s)	93, 179
Bst4CI	ACNGT	2 cut(s)	223, 545
BstAFI	CTTAAG	1 cut(s)	202
BstAUI	TGTACA	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	277, 301
BstDSI	CCRYGG	2 cut(s)	179, 294
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	446, 493
BstKTI	GATC	3 cut(s)	55, 139, 428
BstMBI	GATC	3 cut(s)	52, 136, 425
BstNSI	RCATGY	1 cut(s)	188
BstPI	GGTNACC	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	3 cut(s)	52, 136, 425
BstYI	RGATCY	3 cut(s)	52, 136, 425
BsuRI	GGCC	3 cut(s)	5, 306, 365
BtgI	CCRYGG	2 cut(s)	179, 294
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	446, 493
Cac8I	GCNNGC	1 cut(s)	209
CaiI	CAGNNNCTG	1 cut(s)	461
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	97, 363
Csp6I	GTAC	2 cut(s)	77, 329
CviAII	CATG	5 cut(s)	153, 180, 185, 238, 493
CviJI	RGCY	7 cut(s)	5, 42, 158, 276, 306, 365, 465
CviKI_1	RGCY	7 cut(s)	5, 42, 158, 276, 306, 365, 465
CviQI	GTAC	2 cut(s)	77, 329
DdeI	CTNAG	2 cut(s)	277, 301
DpnI	GATC	3 cut(s)	54, 138, 427
DpnII	GATC	3 cut(s)	52, 136, 425
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	93, 179
Eco24I	GRGCYC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	97
Eco91I	GGTNACC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	223
EcoRV	GATATC	1 cut(s)	176
EcoT14I	CCWWGG	2 cut(s)	93, 179
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	2 cut(s)	93, 179
FaeI	CATG	5 cut(s)	156, 183, 188, 241, 496
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FatI	CATG	5 cut(s)	152, 179, 184, 237, 492
FauI	CCCGC	1 cut(s)	415
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	2 cut(s)	453, 500
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	2 cut(s)	116, 562
GluI	GCNGC	1 cut(s)	128
GsaI	CCCAGC	1 cut(s)	469
HaeIII	GGCC	3 cut(s)	5, 306, 365
HapII	CCGG	1 cut(s)	228
Hin1II	CATG	5 cut(s)	156, 183, 188, 241, 496
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	40
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	136, 173
Hpy188III	TCNNGA	4 cut(s)	30, 56, 438, 481
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	2 cut(s)	223, 545
HpyCH4IV	ACGT	3 cut(s)	120, 146, 405
HpyCH4V	TGCA	4 cut(s)	127, 241, 448, 535
HpyF3I	CTNAG	2 cut(s)	277, 301
HpySE526I	ACGT	3 cut(s)	120, 146, 405
Hsp92II	CATG	5 cut(s)	156, 183, 188, 241, 496
Kzo9I	GATC	3 cut(s)	52, 136, 425
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	7 cut(s)	241, 267, 332, 423, 441, 447, 451
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	2 cut(s)	223, 280
MaeI	CTAG	2 cut(s)	116, 562
MaeII	ACGT	3 cut(s)	120, 146, 405
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	54, 138, 427
MboI	GATC	3 cut(s)	52, 136, 425
MboII	GAAGA	4 cut(s)	28, 71, 299, 401
MflI	RGATCY	3 cut(s)	52, 136, 425
MhlI	GDGCHC	2 cut(s)	14, 160
MluCI	AATT	6 cut(s)	63, 85, 167, 372, 476, 519
MnlI	CCTC	4 cut(s)	26, 110, 354, 477
MseI	TTAA	3 cut(s)	66, 143, 203
MslI	CAYNNNNRTG	2 cut(s)	221, 381
MspA1I	CMGCKG	1 cut(s)	163
MspCI	CTTAAG	1 cut(s)	202
MspI	CCGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	179
NdeII	GATC	3 cut(s)	52, 136, 425
NlaIII	CATG	5 cut(s)	156, 183, 188, 241, 496
NlaIV	GGNNCC	3 cut(s)	54, 159, 351
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	129
PpuMI	RGGWCCY	1 cut(s)	97
Psp1406I	AACGTT	1 cut(s)	146
Psp5II	RGGWCCY	1 cut(s)	97
PspEI	GGTNACC	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	465
PspN4I	GGNNCC	3 cut(s)	54, 159, 351
PspPI	GGNCC	2 cut(s)	97, 363
PspPPI	RGGWCCY	1 cut(s)	97
PsrI	GAACNNNNNNTAC	2 cut(s)	488, 520
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	3 cut(s)	52, 136, 425
RsaI	GTAC	2 cut(s)	78, 330
RsaNI	GTAC	2 cut(s)	77, 329
RseI	CAYNNNNRTG	2 cut(s)	221, 381
SaqAI	TTAA	3 cut(s)	66, 143, 203
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	3 cut(s)	52, 136, 425
Sau96I	GGNCC	2 cut(s)	97, 363
ScaI	AGTACT	1 cut(s)	78
SduI	GDGCHC	2 cut(s)	14, 160
SfaNI	GCATC	2 cut(s)	223, 280
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	2 cut(s)	221, 381
SmlI	CTYRAG	3 cut(s)	80, 202, 481
SmoI	CTYRAG	3 cut(s)	80, 202, 481
Sse9I	AATT	6 cut(s)	63, 85, 167, 372, 476, 519
SsiI	CCGC	2 cut(s)	161, 422
SspMI	CTAG	2 cut(s)	116, 562
StyI	CCWWGG	2 cut(s)	93, 179
TaaI	ACNGT	2 cut(s)	223, 545
TaiI	ACGT	3 cut(s)	123, 149, 408
TaqI	TCGA	1 cut(s)	29
TasI	AATT	6 cut(s)	63, 85, 167, 372, 476, 519
TatI	WGTACW	2 cut(s)	76, 328
Tru1I	TTAA	3 cut(s)	66, 143, 203
Tru9I	TTAA	3 cut(s)	66, 143, 203
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	365
Vha464I	CTTAAG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	2 cut(s)	167, 476
XceI	RCATGY	1 cut(s)	188
XspI	CTAG	2 cut(s)	116, 562
ZrmI	AGTACT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.