Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8355283.1

Orthogroup ID

OG0019295

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 752

Gene Structure 752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8355283.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 530 bp

gggcctccctggcagaagatcctgaagatatacgaaaagaagtacttgagaattatgccaaggacctcccacctatatacttagatgttgtgcagcacgcagatctttcgacattaacatgggctccgttgatgtttaggtacccctggaacgtagtatttggaaacttaagcaagcaaaacatcacggtcgctggcgatgccatgcaccccatgacccctgatctagcacaggggggttgctcagcattagaagatgcagtgatcttaggcaggcatatcgggacatcctttgtacagaatggacaagtacttgtagtgaaaaagatgagtgaagtactgggcaaatacgtagaagaaagaaggtggcgcgtcactttgttgatcatgtggtcctatatatctggatgggtgcaacagggaggatctggatggggtatgaaattcttgagagacacgatattttacaagttccttttccttaagatggtaaaatacgtaacttatgattgtggaaaactcgacttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

175

Amino Acids

19.95

Weight (kDa)

6.34

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019295)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G162100_v2.0.a1
rosa_laevigata	RLG00000031986
rosa_multiflora	Rmu_co8355283.1_g000001 Rmu_ssc0000372.1_g000043
rosa_roxburghii	Rroxscaffold_2G00124210
rosa_rugosa	Rorug02G0223200
rosa_samantha	Rh2AG280000 Rh2BG291600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	140
AccII	CGCG	1 cut(s)	371
AclWI	GGATC	2 cut(s)	13, 432
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	5 cut(s)	44, 142, 296, 311, 338
AfiI	CCNNNNNNNGG	1 cut(s)	486
AflII	CTTAAG	2 cut(s)	168, 481
AjnI	CCWGG	2 cut(s)	8, 145
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	2 cut(s)	13, 432
AoxI	GGCC	1 cut(s)	2
ApeKI	GCWGC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	442
Asp718I	GGTACC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	3 cut(s)	2, 63, 392
AvaII	GGWCC	2 cut(s)	63, 392
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	3 cut(s)	401, 425, 480
BcgI	CGANNNNNNTGC	4 cut(s)	89, 123, 261, 295
BciT130I	CCWGG	2 cut(s)	10, 147
BclI	TGATCA	1 cut(s)	383
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	2 cut(s)	226, 528
BfrI	CTTAAG	2 cut(s)	168, 481
BglI	GCCNNNNNGGC	1 cut(s)	10
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	1 cut(s)	94
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	95
BmcAI	AGTACT	3 cut(s)	44, 311, 338
Bme1390I	CCNGG	2 cut(s)	10, 147
Bme18I	GGWCC	2 cut(s)	63, 392
BmgT120I	GGNCC	3 cut(s)	2, 63, 392
BmiI	GGNNCC	2 cut(s)	125, 142
BmrFI	CCNGG	2 cut(s)	10, 147
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	189, 246
BmuI	ACTGGG	1 cut(s)	349
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	2 cut(s)	67, 468
BsaAI	YACGTR	2 cut(s)	351, 498
BsaJI	CCNNGG	3 cut(s)	8, 59, 145
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse1I	ACTGG	1 cut(s)	344
BseBI	CCWGG	2 cut(s)	10, 147
BseDI	CCNNGG	3 cut(s)	8, 59, 145
BseGI	GGATG	3 cut(s)	286, 412, 436
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	105
BsgI	GTGCAG	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	371
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	4
BshNI	GGYRCC	1 cut(s)	140
BsiEI	CGRYCG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmAI	GTCTC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	4
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp1407I	TGTACA	1 cut(s)	294
Bsp143I	GATC	6 cut(s)	18, 102, 222, 263, 383, 424
Bsp1720I	GCTNAGC	1 cut(s)	243
BspANI	GGCC	1 cut(s)	4
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	371
BspLI	GGNNCC	2 cut(s)	125, 142
BspPI	GGATC	2 cut(s)	13, 432
BspT107I	GGYRCC	1 cut(s)	140
BspTI	CTTAAG	2 cut(s)	168, 481
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	3 cut(s)	8, 59, 145
BssMI	GATC	6 cut(s)	18, 102, 222, 263, 383, 424
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	10, 147
Bst4CI	ACNGT	1 cut(s)	189
BstAFI	CTTAAG	2 cut(s)	168, 481
BstAUI	TGTACA	1 cut(s)	294
BstBAI	YACGTR	2 cut(s)	351, 498
BstC8I	GCNNGC	4 cut(s)	98, 175, 195, 274
BstDEI	CTNAG	3 cut(s)	81, 243, 267
BstF5I	GGATG	3 cut(s)	286, 412, 436
BstFNI	CGCG	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	6 cut(s)	21, 105, 225, 266, 386, 427
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	6 cut(s)	18, 102, 222, 263, 383, 424
BstMCI	CGRYCG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 199
BstNI	CCWGG	2 cut(s)	10, 147
BstSCI	CCNGG	2 cut(s)	8, 145
BstSNI	TACGTA	2 cut(s)	351, 498
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	1 cut(s)	105
BstX2I	RGATCY	3 cut(s)	18, 102, 424
BstYI	RGATCY	3 cut(s)	18, 102, 424
BsuRI	GGCC	1 cut(s)	4
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	3 cut(s)	286, 412, 436
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	4 cut(s)	98, 175, 195, 274
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	3 cut(s)	2, 63, 392
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	5 cut(s)	43, 141, 295, 310, 337
CviAII	CATG	4 cut(s)	119, 204, 213, 387
CviJI	RGCY	2 cut(s)	4, 124
CviKI_1	RGCY	2 cut(s)	4, 124
CviQI	GTAC	5 cut(s)	43, 141, 295, 310, 337
DdeI	CTNAG	3 cut(s)	81, 243, 267
DpnI	GATC	6 cut(s)	20, 104, 224, 265, 385, 426
DpnII	GATC	6 cut(s)	18, 102, 222, 263, 383, 424
Eco105I	TACGTA	2 cut(s)	351, 498
Eco130I	CCWWGG	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	63, 392
Eco57I	CTGAAG	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	63
EcoRII	CCWGG	2 cut(s)	8, 145
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	4 cut(s)	122, 207, 216, 390
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	4 cut(s)	118, 203, 212, 386
FbaI	TGATCA	1 cut(s)	383
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	3 cut(s)	273, 419, 443
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	2 cut(s)	226, 528
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	4
HgaI	GACGC	1 cut(s)	360
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	4 cut(s)	122, 207, 216, 390
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
Hpy188III	TCNNGA	5 cut(s)	22, 282, 404, 428, 447
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4IV	ACGT	3 cut(s)	152, 350, 497
HpyCH4V	TGCA	4 cut(s)	93, 207, 259, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 199
HpyF3I	CTNAG	3 cut(s)	81, 243, 267
HpySE526I	ACGT	3 cut(s)	152, 350, 497
Hsp92II	CATG	4 cut(s)	122, 207, 216, 390
HspAI	GCGC	1 cut(s)	369
KpnI	GGTACC	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	383
Kzo9I	GATC	6 cut(s)	18, 102, 222, 263, 383, 424
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	2 cut(s)	189, 246
MaeI	CTAG	2 cut(s)	226, 528
MaeII	ACGT	3 cut(s)	152, 350, 497
MaeIII	GTNAC	2 cut(s)	372, 498
MalI	GATC	6 cut(s)	20, 104, 224, 265, 385, 426
MboI	GATC	6 cut(s)	18, 102, 222, 263, 383, 424
MboII	GAAGA	4 cut(s)	28, 37, 265, 367
MflI	RGATCY	3 cut(s)	18, 102, 424
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	2 cut(s)	51, 442
MnlI	CCTC	3 cut(s)	15, 76, 415
MseI	TTAA	3 cut(s)	115, 169, 482
MslI	CAYNNNNRTG	1 cut(s)	117
MspCI	CTTAAG	2 cut(s)	168, 481
MspR9I	CCNGG	2 cut(s)	10, 147
MvaI	CCWGG	2 cut(s)	10, 147
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	10, 199
NdeII	GATC	6 cut(s)	18, 102, 222, 263, 383, 424
NlaIII	CATG	4 cut(s)	122, 207, 216, 390
NlaIV	GGNNCC	2 cut(s)	125, 142
NmuCI	GTSAC	1 cut(s)	372
PkrI	GCNGC	1 cut(s)	95
Ppu21I	YACGTR	2 cut(s)	351, 498
PpuMI	RGGWCCY	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	8, 145
PspGI	CCWGG	2 cut(s)	8, 145
PspN4I	GGNNCC	2 cut(s)	125, 142
PspPI	GGNCC	3 cut(s)	2, 63, 392
PspPPI	RGGWCCY	1 cut(s)	63
PsuI	RGATCY	3 cut(s)	18, 102, 424
RsaI	GTAC	5 cut(s)	44, 142, 296, 311, 338
RsaNI	GTAC	5 cut(s)	43, 141, 295, 310, 337
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	115, 169, 482
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	6 cut(s)	18, 102, 222, 263, 383, 424
Sau96I	GGNCC	3 cut(s)	2, 63, 392
ScaI	AGTACT	3 cut(s)	44, 311, 338
ScrFI	CCNGG	2 cut(s)	10, 147
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	7 cut(s)	68, 75, 142, 155, 353, 367, 500
SfaNI	GCATC	2 cut(s)	189, 246
SinI	GGWCC	2 cut(s)	63, 392
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	4 cut(s)	46, 168, 447, 481
SmoI	CTYRAG	4 cut(s)	46, 168, 447, 481
SnaBI	TACGTA	2 cut(s)	351, 498
Sse9I	AATT	2 cut(s)	51, 442
SspMI	CTAG	2 cut(s)	226, 528
StyD4I	CCNGG	2 cut(s)	8, 145
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	189
TaiI	ACGT	3 cut(s)	155, 353, 500
TaqI	TCGA	2 cut(s)	109, 521
TasI	AATT	2 cut(s)	51, 442
TatI	WGTACW	4 cut(s)	42, 294, 309, 336
Tru1I	TTAA	3 cut(s)	115, 169, 482
Tru9I	TTAA	3 cut(s)	115, 169, 482
TscAI	CASTG	1 cut(s)	266
TseFI	GTSAC	1 cut(s)	372
TseI	GCWGC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	372
TspDTI	ATGAA	1 cut(s)	454
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	266
Vha464I	CTTAAG	2 cut(s)	168, 481
VpaK11BI	GGWCC	2 cut(s)	63, 392
XapI	RAATTY	1 cut(s)	442
XspI	CTAG	2 cut(s)	226, 528
ZrmI	AGTACT	3 cut(s)	44, 311, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.