Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0019295

Physical Location & Seq

Genomic Coordinates Forward (+)

32761492 .. 32761890

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG291600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTTTAGGTACCCCTGGAACGTAGTATTTGGAAACTTAAGCAAGCAAAACATCACGGTAGCTGGCGATGCCATGCACCCCATGACCCCTGATCTAGCACAGGGGGGTTGCTCAGCATTAGAAGATGCAGTGATCTTAGGCAGGCATATTGGGACATCCTTTGTACAGAATGGACGAGTACTTGTAGTGAAAAAGATGAGTGAAGTACTGGGCAAATACGTAGAAGAAAGAAGGTGGCGCGTCACTTTGTTGATCATGTGGTCCTATATATCTGGATGGGTGCAACAGGGAGGATCTGGATGGGGTATGAAATTCTTGAGAGACACCATATTTTACAAGTTCCTTTTCCTTAAGATGGTAAAATACGTAACTTATGATTGTGGAAAACTCGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

132

Amino Acids

15.14

Weight (kDa)

9.48

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019295)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G162100_v2.0.a1
rosa_laevigata	RLG00000031986
rosa_multiflora	Rmu_co8355283.1_g000001 Rmu_ssc0000372.1_g000043
rosa_roxburghii	Rroxscaffold_2G00124210
rosa_rugosa	Rorug02G0223200
rosa_samantha	Rh2AG280000 Rh2BG291600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	9
AccII	CGCG	1 cut(s)	240
AclWI	GGATC	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	311
AfaI	GTAC	4 cut(s)	11, 165, 180, 207
AfiI	CCNNNNNNNGG	1 cut(s)	355
AflII	CTTAAG	2 cut(s)	37, 350
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	1 cut(s)	301
ApoI	RAATTY	1 cut(s)	311
Asp718I	GGTACC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	9
BccI	CCATC	3 cut(s)	270, 294, 349
BciT130I	CCWGG	1 cut(s)	16
BclI	TGATCA	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	2 cut(s)	95, 397
BfrI	CTTAAG	2 cut(s)	37, 350
BlpI	GCTNAGC	1 cut(s)	112
BmcAI	AGTACT	2 cut(s)	180, 207
Bme1390I	CCNGG	1 cut(s)	16
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	1 cut(s)	16
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	2 cut(s)	58, 115
BmuI	ACTGGG	1 cut(s)	218
Bpu1102I	GCTNAGC	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	337
BsaAI	YACGTR	2 cut(s)	220, 367
BsaJI	CCNNGG	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	3 cut(s)	155, 281, 305
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	166
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	4 cut(s)	91, 132, 252, 293
Bsp1720I	GCTNAGC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	125
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	301
BspT107I	GGYRCC	1 cut(s)	9
BspTI	CTTAAG	2 cut(s)	37, 350
BsrGI	TGTACA	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	4 cut(s)	91, 132, 252, 293
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	58
BstAFI	CTTAAG	2 cut(s)	37, 350
BstAUI	TGTACA	1 cut(s)	163
BstBAI	YACGTR	2 cut(s)	220, 367
BstC8I	GCNNGC	3 cut(s)	44, 64, 143
BstDEI	CTNAG	2 cut(s)	112, 136
BstF5I	GGATG	3 cut(s)	155, 281, 305
BstFNI	CGCG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	4 cut(s)	94, 135, 255, 296
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	4 cut(s)	91, 132, 252, 293
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	14
BstSNI	TACGTA	2 cut(s)	220, 367
BstUI	CGCG	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BtgZI	GCGATG	1 cut(s)	81
BtsCI	GGATG	3 cut(s)	155, 281, 305
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	3 cut(s)	44, 64, 143
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	261
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	4 cut(s)	10, 164, 179, 206
CviAII	CATG	3 cut(s)	73, 82, 256
CviJI	RGCY	1 cut(s)	62
CviKI_1	RGCY	1 cut(s)	62
CviQI	GTAC	4 cut(s)	10, 164, 179, 206
DdeI	CTNAG	2 cut(s)	112, 136
DpnI	GATC	4 cut(s)	93, 134, 254, 295
DpnII	GATC	4 cut(s)	91, 132, 252, 293
Eco105I	TACGTA	2 cut(s)	220, 367
Eco47I	GGWCC	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	14
FaeI	CATG	3 cut(s)	76, 85, 259
FaiI	YATR	9 cut(s)	74, 83, 147, 257, 267, 269, 308, 329, 375
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	3 cut(s)	72, 81, 255
FbaI	TGATCA	1 cut(s)	252
FokI	GGATG	3 cut(s)	142, 288, 312
FspBI	CTAG	2 cut(s)	95, 397
GlaI	GCGC	1 cut(s)	239
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	3 cut(s)	76, 85, 259
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
Hpy188III	TCNNGA	3 cut(s)	273, 297, 316
HpyAV	CCTTC	1 cut(s)	225
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	3 cut(s)	21, 219, 366
HpyCH4V	TGCA	3 cut(s)	76, 128, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	112, 136
HpySE526I	ACGT	3 cut(s)	21, 219, 366
Hsp92II	CATG	3 cut(s)	76, 85, 259
HspAI	GCGC	1 cut(s)	238
KpnI	GGTACC	1 cut(s)	13
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	4 cut(s)	91, 132, 252, 293
LpnPI	CCDG	9 cut(s)	28, 48, 86, 102, 127, 194, 258, 272, 282
LweI	GCATC	2 cut(s)	58, 115
MaeI	CTAG	2 cut(s)	95, 397
MaeII	ACGT	3 cut(s)	21, 219, 366
MaeIII	GTNAC	2 cut(s)	241, 367
MalI	GATC	4 cut(s)	93, 134, 254, 295
MboI	GATC	4 cut(s)	91, 132, 252, 293
MboII	GAAGA	2 cut(s)	134, 236
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	1 cut(s)	311
MnlI	CCTC	1 cut(s)	284
MseI	TTAA	2 cut(s)	38, 351
MspCI	CTTAAG	2 cut(s)	37, 350
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	4 cut(s)	91, 132, 252, 293
NlaIII	CATG	3 cut(s)	76, 85, 259
NlaIV	GGNNCC	1 cut(s)	11
NmuCI	GTSAC	1 cut(s)	241
Ppu21I	YACGTR	2 cut(s)	220, 367
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	293
RsaI	GTAC	4 cut(s)	11, 165, 180, 207
RsaNI	GTAC	4 cut(s)	10, 164, 179, 206
SaqAI	TTAA	2 cut(s)	38, 351
Sau3AI	GATC	4 cut(s)	91, 132, 252, 293
Sau96I	GGNCC	1 cut(s)	261
ScaI	AGTACT	2 cut(s)	180, 207
ScrFI	CCNGG	1 cut(s)	16
SetI	ASST	6 cut(s)	11, 24, 64, 222, 236, 369
SfaNI	GCATC	2 cut(s)	58, 115
SinI	GGWCC	1 cut(s)	261
SmlI	CTYRAG	3 cut(s)	37, 316, 350
SmoI	CTYRAG	3 cut(s)	37, 316, 350
SnaBI	TACGTA	2 cut(s)	220, 367
Sse9I	AATT	1 cut(s)	311
SspMI	CTAG	2 cut(s)	95, 397
StyD4I	CCNGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	3 cut(s)	24, 222, 369
TaqI	TCGA	1 cut(s)	390
TasI	AATT	1 cut(s)	311
TatI	WGTACW	3 cut(s)	163, 178, 205
Tru1I	TTAA	2 cut(s)	38, 351
Tru9I	TTAA	2 cut(s)	38, 351
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	135
Vha464I	CTTAAG	2 cut(s)	37, 350
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	1 cut(s)	311
XspI	CTAG	2 cut(s)	95, 397
ZrmI	AGTACT	2 cut(s)	180, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.