Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004559

Physical Location & Seq

Genomic Coordinates Reverse (-)

21607779 .. 21610688

Gene Structure 2910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0223200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGCTCTGTACCACCACATATCAACCTCTCCCCAATCTCCTCATCACAAACCCCAACACCAACAACCTCCGCCCAAAACCCTCACTCCAATTCGCACAATCACGCCACTCTCTCAGCCTTCGCTCTCGTTTGCTTTCGATTAGAGCTACATCTTCTGAAGAAAGTGGGGGAAATGCGTATTCTGGTGAAGAGCGTGATGGGGTGGTATCCACTTATGATGTTCCACCGCCCGAAAAGAATGTTTATGGTCAAGCTGTGGTAGAAGAAGCACCTCAAGAGGACAGCATTGTGAACGGCAGTGATGGCCAATCGCAGATATCTGAGTTTTTGGAGAACTTTAATGTAAAGTTGGACAATGATGATGCATATGTCTATCTACTATACGGTAGTGGTGCCTTGGTTACCCTGTGGTTAGCATCAGCTATCATAGGTGCTATTGATTCTATTCCATTGTTCCCCAAGTTGATGGAAGTTGTGGGTCTTGGATACACAATCTGGTTTAGCCGTCGTTATCTGATATTCAAGAAAAACAGGGAGGAGTTGGTTGCTAAAGTCCAAGTTCTTAAGCAGCAGGTTCTTGGTTCAAATGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

199

Amino Acids

22.08

Weight (kDa)

4.81

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAAD	PF14159	120 - 195	7.4e-26	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21730 AT2G21890 AT4G39330 AT4G39330
fragaria_vesca	FvH4_1g23790 FvH4_1g23790 FvH4_1g23810
malus_domestica	MD07G1183600.v1.1 MD13G1280800.v1.1
prunus_persica	Prupe.6G161800_v2.0.a1 Prupe.6G162000_v2.0.a1 Prupe.6G162000_v2.0.a1
pyrus_communis	pycom15g30090
rosa_chinensis	RchiOBHm_Chr2g0119681 RchiOBHm_Chr2g0119731
rosa_laevigata	RLG00000018484 RLG00000018488
rosa_multiflora	Rmu_sc0001501.1_g000063 Rmu_sc0001501.1_g000064 Rmu_sc0001501.1_g000065 Rmu_sc0001501.1_g000091 Rmu_sc0018654.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124130 Rroxscaffold_2G00124200
rosa_rugosa	Rorug02G0222900 Rorug02G0223200
rosa_samantha	Rh2BG292100 Rh2BG292400
rosa_wichuraiana	Rw0G003780 Rw2G022420 Rw2G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	395
AciI	CCGC	2 cut(s)	73, 230
AcoI	YGGCCR	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	13
AflII	CTTAAG	1 cut(s)	566
AgsI	TTSAA	2 cut(s)	526, 588
AluBI	AGCT	4 cut(s)	7, 149, 257, 425
AluI	AGCT	4 cut(s)	7, 149, 257, 425
Alw21I	GWGCWC	1 cut(s)	9
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	571
AsuHPI	GGTGA	1 cut(s)	200
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	3 cut(s)	194, 299, 463
BceAI	ACGGC	2 cut(s)	313, 492
BciVI	GTATCC	2 cut(s)	220, 482
BfrI	CTTAAG	1 cut(s)	566
BfuAI	ACCTGC	1 cut(s)	565
BfuI	GTATCC	2 cut(s)	220, 482
BisI	GCNGC	1 cut(s)	572
BlsI	GCNGC	1 cut(s)	573
BmiI	GGNNCC	1 cut(s)	397
BmsI	GCATC	2 cut(s)	355, 428
BpuEI	CTTGAG	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	399
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
BseDI	CCNNGG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	130, 315
BseRI	GAGGAG	2 cut(s)	32, 554
BseXI	GCAGC	1 cut(s)	583
BshFI	GGCC	1 cut(s)	309
BshNI	GGYRCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	73, 230
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	2 cut(s)	129, 316
BspLI	GGNNCC	1 cut(s)	397
BspMI	ACCTGC	1 cut(s)	565
BspQI	GCTCTTC	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	395
BspTI	CTTAAG	1 cut(s)	566
BssECI	CCNNGG	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	566
BstDEI	CTNAG	2 cut(s)	116, 324
BstEII	GGTNACC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	1 cut(s)	306
BstPI	GGTNACC	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	583
BstXI	CCANNNNNNTGG	1 cut(s)	469
BsuI	GTATCC	2 cut(s)	220, 482
BsuRI	GGCC	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	307
BveI	ACCTGC	1 cut(s)	565
Csp6I	GTAC	1 cut(s)	12
CviJI	RGCY	7 cut(s)	7, 120, 149, 257, 309, 425, 507
CviKI_1	RGCY	7 cut(s)	7, 120, 149, 257, 309, 425, 507
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	2 cut(s)	116, 324
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	180
Eco91I	GGTNACC	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	403
EcoRV	GATATC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	399
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	399
FaiI	YATR	7 cut(s)	22, 219, 249, 370, 372, 385, 431
FauNDI	CATATG	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	572
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	572
GluI	GCNGC	1 cut(s)	572
HaeIII	GGCC	1 cut(s)	309
HinfI	GANTC	1 cut(s)	443
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	3 cut(s)	160, 325, 519
Hpy188III	TCNNGA	2 cut(s)	278, 526
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	513
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	1 cut(s)	368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	306
HpyF3I	CTNAG	2 cut(s)	116, 324
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	171, 422, 484, 520, 560
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	2 cut(s)	355, 428
MaeIII	GTNAC	1 cut(s)	403
MboII	GAAGA	4 cut(s)	147, 173, 203, 278
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	309
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	7 cut(s)	39, 53, 80, 94, 274, 285, 532
Mox20I	TGGCCA	1 cut(s)	309
Mph1103I	ATGCAT	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	2 cut(s)	342, 567
Msp20I	TGGCCA	1 cut(s)	309
MspCI	CTTAAG	1 cut(s)	566
MwoI	GCNNNNNNNGC	1 cut(s)	306
NdeI	CATATG	1 cut(s)	370
NlaIV	GGNNCC	1 cut(s)	397
NsiI	ATGCAT	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	1 cut(s)	573
Psp124BI	GAGCTC	1 cut(s)	9
PspEI	GGTNACC	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	397
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	342, 567
SatI	GCNGC	1 cut(s)	572
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	9 cut(s)	9, 31, 72, 151, 259, 277, 427, 436, 579
SfaNI	GCATC	2 cut(s)	355, 428
SmlI	CTYRAG	2 cut(s)	276, 566
SmoI	CTYRAG	2 cut(s)	276, 566
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	2 cut(s)	73, 230
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	389
TaqI	TCGA	1 cut(s)	140
TasI	AATT	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	2 cut(s)	342, 567
Tru9I	TTAA	2 cut(s)	342, 567
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	1 cut(s)	571
TspRI	CASTG	1 cut(s)	307
Vha464I	CTTAAG	1 cut(s)	566
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.