Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004559

Physical Location & Seq

Genomic Coordinates Reverse (-)

15107521 .. 15111014

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G162000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCAAAATCACCGGAAGAAGAACACCCAGAGAAGGCTTTCGGGTGGGCTGCCAGAGACACTTCTGGAATACTTTCCCCATTTCGTTTCTCTAGAAGGGAAAATGCTGATGATGATGTAACAATAAAGGTCCTTTACTGTGGGGTTTGCCATTCAGACGTGCATTCTGTCAAGAATGAATGGGGGTTCACCAACTACCCTATTGTACCTGGGCATGAAATTGTTGGTGTTGTGACCAAAGCTGGGAAGAATGTGGAGAAATTCAAAGTAGGTGATCGTGTAGGAGTTGGGGTCATAGTAGGTTCCTGCATGAAATGTGAGACCTGCGACCAGGACTTAGAGAACTACTGCCCTCGAACAATATTTACCTATAACTCACTTGATCACGACCGAACAAAAACTTATGGTGGTTATTCCGATATGATTGTTGTTCACCATCGCTATGTGCTCCGCTTTCCAGATAACTTAGCCCTTGATGCGGGTGCACCACTTTTATGTGCTGGGATCACTGTGTACAGTCCAATGAAATATTATGGCATGACTGAGCCTGGAAAGCATTTGGGTGTGGCAGGACTTGGTGGGCTTGGTCATGTGGCTGTGAAGATTGGTAAGGCTTTTGGTTTGAAAGTGACTGTCATCAGTTCCTCCCCAGGAAAGGAGGATGAGGCTGTTAAGAGACTTGGAGCTGATTCTTTTCTCCTCTCAAGTGACCCTGCAAAATTGAAGGCAGCAATGGGTACCATGGATTACATCATTGACACGGTGTCTGCAGTTCATGCGTTGGCTCCATTAATTGGTCTACTGAAGCTGAATGGGAAGCTGGTCACGGTGGGTTTGCCTGACAAGCCCCTGGAGTTGCCAATCTTTCCCTTAGTTTTGGGACGGAAGCTTGTAGGGGGAAGTGACATAGGAGGGGTGAAAGAGACGCAGGAGATGCTTGACTTTTGTGCCAAGCACAATATTACCTCAGACATCGAGCTGATTAGAATGGATTACATTAACACTGCGATGGAAAGAATTGCCAAATCTGATGTCCGGTATCGGTTTGTGATCGATGTGGGGAACTCCTTGACTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009735 GO:0009808 GO:0009809 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0045551 GO:0048046 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

360

Amino Acids

39.07

Weight (kDa)

6.6

Isoelectric Point (pI)

23.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21730 AT2G21890 AT4G39330 AT4G39330
fragaria_vesca	FvH4_1g23790 FvH4_1g23790 FvH4_1g23810
malus_domestica	MD07G1183600.v1.1 MD13G1280800.v1.1
prunus_persica	Prupe.6G161800_v2.0.a1 Prupe.6G162000_v2.0.a1 Prupe.6G162000_v2.0.a1
pyrus_communis	pycom15g30090
rosa_chinensis	RchiOBHm_Chr2g0119681 RchiOBHm_Chr2g0119731
rosa_laevigata	RLG00000018484 RLG00000018488
rosa_multiflora	Rmu_sc0001501.1_g000063 Rmu_sc0001501.1_g000064 Rmu_sc0001501.1_g000065 Rmu_sc0001501.1_g000091 Rmu_sc0018654.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124130 Rroxscaffold_2G00124200
rosa_rugosa	Rorug02G0222900 Rorug02G0223200
rosa_samantha	Rh2BG292100 Rh2BG292400
rosa_wichuraiana	Rw0G003780 Rw2G022420 Rw2G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	332
Acc65I	GGTACC	1 cut(s)	737
AccB1I	GGYRCC	1 cut(s)	737
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccI	GTMKAC	1 cut(s)	799
AciI	CCGC	2 cut(s)	451, 479
AclWI	GGATC	1 cut(s)	512
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	824
AfaI	GTAC	3 cut(s)	207, 515, 739
AfiI	CCNNNNNNNGG	5 cut(s)	34, 243, 478, 655, 794
AgsI	TTSAA	3 cut(s)	265, 625, 724
AhdI	GACNNNNNGTC	1 cut(s)	763
AjiI	CACGTC	1 cut(s)	160
AjnI	CCWGG	5 cut(s)	208, 330, 547, 649, 849
AluBI	AGCT	6 cut(s)	242, 686, 808, 820, 889, 979
AluI	AGCT	6 cut(s)	242, 686, 808, 820, 889, 979
Alw21I	GWGCWC	2 cut(s)	450, 487
Alw26I	GTCTC	4 cut(s)	51, 314, 670, 917
Alw44I	GTGCAC	1 cut(s)	483
AlwI	GGATC	1 cut(s)	512
ApaLI	GTGCAC	1 cut(s)	483
ApeKI	GCWGC	2 cut(s)	50, 728
ApoI	RAATTY	1 cut(s)	260
ArsI	GACNNNNNNTTYG	2 cut(s)	1017, 1049
AseI	ATTAAT	1 cut(s)	791
Asp700I	GAANNNNTTC	2 cut(s)	38, 73
Asp718I	GGTACC	1 cut(s)	737
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	5 cut(s)	3, 181, 284, 425, 928
AvaII	GGWCC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	737
Bbv12I	GWGCWC	2 cut(s)	450, 487
BbvI	GCAGC	2 cut(s)	37, 740
BccI	CCATC	2 cut(s)	444, 1003
BciT130I	CCWGG	5 cut(s)	210, 332, 549, 651, 851
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	4 cut(s)	51, 314, 670, 917
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	768
BfuAI	ACCTGC	1 cut(s)	332
BisI	GCNGC	2 cut(s)	51, 729
BlsI	GCNGC	2 cut(s)	52, 730
Bme1390I	CCNGG	5 cut(s)	210, 332, 549, 651, 851
Bme18I	GGWCC	1 cut(s)	130
BmeRI	GACNNNNNGTC	1 cut(s)	763
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	3 cut(s)	304, 739, 786
BmrFI	CCNGG	5 cut(s)	210, 332, 549, 651, 851
BmsI	GCATC	2 cut(s)	466, 924
BpmI	CTGGAG	1 cut(s)	872
BpuEI	CTTGAG	1 cut(s)	688
Bsa29I	ATCGAT	1 cut(s)	1053
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	4 cut(s)	209, 649, 741, 849
BsaWI	WCCGGW	2 cut(s)	13, 1035
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 243, 478, 655, 794
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	5 cut(s)	210, 332, 549, 651, 851
BseCI	ATCGAT	1 cut(s)	1053
BseDI	CCNNGG	4 cut(s)	209, 649, 741, 849
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	5 cut(s)	34, 243, 478, 655, 794
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	2 cut(s)	534, 981
BseRI	GAGGAG	1 cut(s)	689
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	37, 740
BseYI	CCCAGC	2 cut(s)	242, 500
Bsh1285I	CGRYCG	1 cut(s)	391
BshNI	GGYRCC	1 cut(s)	737
BshVI	ATCGAT	1 cut(s)	1053
BsiEI	CGRYCG	1 cut(s)	391
BsiHKAI	GWGCWC	2 cut(s)	450, 487
BsiSI	CCGG	2 cut(s)	14, 1036
BslFI	GGGAC	1 cut(s)	894
BslI	CCNNNNNNNGG	5 cut(s)	34, 243, 478, 655, 794
BsmAI	GTCTC	4 cut(s)	51, 314, 670, 917
BsmBI	CGTCTC	1 cut(s)	917
BsmFI	GGGAC	1 cut(s)	894
BsmI	GAATGC	1 cut(s)	163
Bso31I	GGTCTC	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	450, 487
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	4 cut(s)	274, 382, 504, 1050
Bsp19I	CCATGG	1 cut(s)	741
BspACI	CCGC	2 cut(s)	451, 479
BspCNI	CTCAG	2 cut(s)	535, 980
BspDI	ATCGAT	1 cut(s)	1053
BspLI	GGNNCC	3 cut(s)	304, 739, 786
BspMAI	CTGCAG	1 cut(s)	772
BspMI	ACCTGC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	512
BspT107I	GGYRCC	1 cut(s)	737
BspTNI	GGTCTC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	738
BsrGI	TGTACA	1 cut(s)	513
BssECI	CCNNGG	4 cut(s)	209, 649, 741, 849
BssMI	GATC	4 cut(s)	274, 382, 504, 1050
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	5 cut(s)	210, 332, 549, 651, 851
Bst4CI	ACNGT	6 cut(s)	140, 511, 518, 634, 763, 829
BstAPI	GCANNNNNTGC	2 cut(s)	776, 934
BstAUI	TGTACA	1 cut(s)	513
BstDEI	CTNAG	6 cut(s)	337, 466, 543, 871, 967, 1074
BstDSI	CCRYGG	1 cut(s)	741
BstF5I	GGATG	1 cut(s)	667
BstKTI	GATC	4 cut(s)	277, 385, 507, 1053
BstMAI	GTCTC	4 cut(s)	51, 314, 670, 917
BstMBI	GATC	4 cut(s)	274, 382, 504, 1050
BstMCI	CGRYCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	5 cut(s)	476, 553, 776, 844, 934
BstNI	CCWGG	5 cut(s)	210, 332, 549, 651, 851
BstSCI	CCNGG	5 cut(s)	208, 330, 547, 649, 849
BstSFI	CTRYAG	1 cut(s)	768
BstSLI	GKGCMC	1 cut(s)	487
BstV1I	GCAGC	2 cut(s)	37, 740
Bsu15I	ATCGAT	1 cut(s)	1053
BsuTUI	ATCGAT	1 cut(s)	1053
BtgI	CCRYGG	1 cut(s)	741
BtgZI	GCGATG	2 cut(s)	422, 1022
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	667
BtsI	GCAGTG	1 cut(s)	1002
BtsIMutI	CAGTG	2 cut(s)	507, 1002
BveI	ACCTGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	130
ClaI	ATCGAT	1 cut(s)	1053
CseI	GACGC	1 cut(s)	934
Csp6I	GTAC	3 cut(s)	206, 514, 738
CviAII	CATG	6 cut(s)	215, 310, 538, 590, 742, 776
CviQI	GTAC	3 cut(s)	206, 514, 738
DdeI	CTNAG	6 cut(s)	337, 466, 543, 871, 967, 1074
DpnI	GATC	4 cut(s)	276, 384, 506, 1052
DpnII	GATC	4 cut(s)	274, 382, 504, 1050
DriI	GACNNNNNGTC	1 cut(s)	763
Eam1105I	GACNNNNNGTC	1 cut(s)	763
Eco130I	CCWWGG	1 cut(s)	741
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	824
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRII	CCWGG	5 cut(s)	208, 330, 547, 649, 849
EcoT14I	CCWWGG	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	1 cut(s)	917
FaeI	CATG	6 cut(s)	218, 313, 541, 593, 745, 779
FaqI	GGGAC	1 cut(s)	894
FatI	CATG	6 cut(s)	214, 309, 537, 589, 741, 775
FauI	CCCGC	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	799
Fnu4HI	GCNGC	2 cut(s)	51, 729
FokI	GGATG	1 cut(s)	674
Fsp4HI	GCNGC	2 cut(s)	51, 729
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	2 cut(s)	51, 729
GsaI	CCCAGC	2 cut(s)	246, 504
GsuI	CTGGAG	1 cut(s)	872
HapII	CCGG	2 cut(s)	14, 1036
HgaI	GACGC	1 cut(s)	934
Hin1II	CATG	6 cut(s)	218, 313, 541, 593, 745, 779
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	2 cut(s)	689, 1072
HpaII	CCGG	2 cut(s)	14, 1036
HphI	GGTGA	5 cut(s)	3, 181, 284, 425, 928
Hpy166II	GTNNAC	5 cut(s)	189, 433, 485, 514, 800
Hpy188I	TCNGA	4 cut(s)	157, 418, 970, 1030
Hpy188III	TCNNGA	5 cut(s)	66, 93, 172, 386, 458
Hpy8I	GTNNAC	5 cut(s)	189, 433, 485, 514, 800
HpyAV	CCTTC	3 cut(s)	28, 90, 718
HpyCH4III	ACNGT	6 cut(s)	140, 511, 518, 634, 763, 829
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	5 cut(s)	163, 309, 485, 716, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	476, 553, 776, 844, 934
HpyF3I	CTNAG	6 cut(s)	337, 466, 543, 871, 967, 1074
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	6 cut(s)	218, 313, 541, 593, 745, 779
KpnI	GGTACC	1 cut(s)	741
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	274, 382, 504, 1050
LmnI	GCTCC	3 cut(s)	453, 683, 790
Lsp1109I	GCAGC	2 cut(s)	37, 740
LweI	GCATC	2 cut(s)	466, 924
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	6 cut(s)	118, 232, 628, 707, 823, 902
MalI	GATC	4 cut(s)	276, 384, 506, 1052
MboI	GATC	4 cut(s)	274, 382, 504, 1050
MboII	GAAGA	4 cut(s)	29, 32, 259, 613
MhlI	GDGCHC	2 cut(s)	450, 487
MluCI	AATT	5 cut(s)	219, 260, 719, 792, 1017
MlyI	GAGTC	1 cut(s)	1066
MnlI	CCTC	7 cut(s)	363, 652, 655, 658, 710, 905, 976
MroXI	GAANNNNTTC	2 cut(s)	38, 73
MseI	TTAA	3 cut(s)	672, 791, 999
MslI	CAYNNNNRTG	4 cut(s)	441, 493, 561, 1007
MspI	CCGG	2 cut(s)	14, 1036
MspR9I	CCNGG	5 cut(s)	210, 332, 549, 651, 851
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	5 cut(s)	210, 332, 549, 651, 851
MwoI	GCNNNNNNNGC	5 cut(s)	476, 553, 776, 844, 934
NcoI	CCATGG	1 cut(s)	741
NdeII	GATC	4 cut(s)	274, 382, 504, 1050
NlaIII	CATG	6 cut(s)	218, 313, 541, 593, 745, 779
NlaIV	GGNNCC	3 cut(s)	304, 739, 786
NmuCI	GTSAC	5 cut(s)	232, 628, 707, 823, 902
PctI	GAATGC	1 cut(s)	163
PdmI	GAANNNNTTC	2 cut(s)	38, 73
PfeI	GAWTC	1 cut(s)	689
PflMI	CCANNNNNTGG	1 cut(s)	794
PkrI	GCNGC	2 cut(s)	52, 730
PleI	GAGTC	1 cut(s)	1066
PpsI	GAGTC	1 cut(s)	1066
PpuMI	RGGWCCY	1 cut(s)	130
PshBI	ATTAAT	1 cut(s)	791
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	5 cut(s)	208, 330, 547, 649, 849
PspFI	CCCAGC	2 cut(s)	242, 500
PspGI	CCWGG	5 cut(s)	208, 330, 547, 649, 849
PspN4I	GGNNCC	3 cut(s)	304, 739, 786
PspPI	GGNCC	1 cut(s)	130
PspPPI	RGGWCCY	1 cut(s)	130
PsrI	GAACNNNNNNTAC	2 cut(s)	349, 381
PstI	CTGCAG	1 cut(s)	772
RsaI	GTAC	3 cut(s)	207, 515, 739
RsaNI	GTAC	3 cut(s)	206, 514, 738
RseI	CAYNNNNRTG	4 cut(s)	441, 493, 561, 1007
SaqAI	TTAA	3 cut(s)	672, 791, 999
SatI	GCNGC	2 cut(s)	51, 729
Sau3AI	GATC	4 cut(s)	274, 382, 504, 1050
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	1066
ScrFI	CCNGG	5 cut(s)	210, 332, 549, 651, 851
SduI	GDGCHC	2 cut(s)	450, 487
SfaNI	GCATC	2 cut(s)	466, 924
SfcI	CTRYAG	1 cut(s)	768
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	4 cut(s)	441, 493, 561, 1007
SmlI	CTYRAG	1 cut(s)	703
SmoI	CTYRAG	1 cut(s)	703
Sse9I	AATT	5 cut(s)	219, 260, 719, 792, 1017
SsiI	CCGC	2 cut(s)	451, 479
SspI	AATATT	3 cut(s)	363, 530, 961
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	5 cut(s)	208, 330, 547, 649, 849
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	6 cut(s)	140, 511, 518, 634, 763, 829
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	355, 975, 1053
TaqII	GACCGA	1 cut(s)	405
TasI	AATT	5 cut(s)	219, 260, 719, 792, 1017
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	3 cut(s)	672, 791, 999
Tru9I	TTAA	3 cut(s)	672, 791, 999
TscAI	CASTG	2 cut(s)	514, 1009
TseFI	GTSAC	5 cut(s)	232, 628, 707, 823, 902
TseI	GCWGC	2 cut(s)	50, 728
Tsp45I	GTSAC	5 cut(s)	232, 628, 707, 823, 902
TspDTI	ATGAA	5 cut(s)	192, 231, 326, 539, 764
TspGWI	ACGGA	1 cut(s)	898
TspRI	CASTG	2 cut(s)	514, 1009
Van91I	CCANNNNNTGG	1 cut(s)	794
VneI	GTGCAC	1 cut(s)	483
VpaK11BI	GGWCC	1 cut(s)	130
VspI	ATTAAT	1 cut(s)	791
XapI	RAATTY	1 cut(s)	260
XbaI	TCTAGA	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	799
XmnI	GAANNNNTTC	2 cut(s)	38, 73
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.