Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004559

Physical Location & Seq

Genomic Coordinates Reverse (-)

58326610 .. 58333752

Gene Structure 7143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCAAAATCACCAGAAGAAGAACACCCTCAAAAGGTTTTTGGTTGGGCTGCCAGAGATTCTTCTGGGTCACTTTCCCTCTTTCATTTCTCTAGAAGGGAAAATGCTGATGGCGATGTAACAATAAAAGTCCTCTATTGTGGGGTTTGCCATTCAGACTTGCATTCTGTCAAGAACGATTGGGGTTCACCAACTATCCTATTGCACGAAATTGTCGGTGTTGTGACCAAAACTGGGAAAAGTGTGACGAAATTCAAAGAAGGTGATCGTGTAGGAGTTGGTGTTATGGTGGGATCCTGCAACACATGTGAGACTTGCCAGCAGGACTTGGAGAACTATTGCCCGAAAGTGATATTCACCTATAACTCCCTCAATCATGACAAAACTAAAACTTATGGTGGTTATTCTGATATGATTGTTGTTGACCATCGCTTTGTGCTCCGCTTTCCCGATAACTTACCCCCAGATTCTGGCGCTCCACTTCTATGTGCCGGGATCACTGTGTATAGTCCAATGAAGTATTACGGCATGACAGAGCCTGGAAAGCATTTGGGCGTGGCAGGACTAGGTGGACTAGGTCATATTGCTGTCAAAATTGGTAAGGCATTTGGTTTGAAGGTAACTGTCATCAGTACTTCCCCAGCTAAGGAGGAGGAGGCTATTAACAGACTTGGGGCTGATTCTTTTGTTGTTTCAACTGACCCTGCACAATTGAAGGCAGCGATGGGTACCATGGATTACATAATTGACACAGTATCTGCAGTTCATGCCCTTGCTCCATTAATTGGTCTACTTAAGTTGAATGGGAAGCTGGTTACTGTGGGTTTGCCTAATAAGCCACTGGAGTTGCCTATATTTCCATTGGTTCTGGATTGTGATGCTGCATTGTTTAGACTTATAGTGCTATTTCTGTTGGTTCACACTGAAACAGCAACTAGCATCCGTTTACTCTCTAGCACTGTGAACAATATCCCATCTGCTTTTTTGGTTGATTCTGCTATATTGTCCAAGTTTGTGATGGATCCGAGAGTGAGCACCGAGCAGCATTACCAGCCAAATTCCACAATCCCTAACCATGTGGAAGGAGACCACCAAATTCAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009735 GO:0009808 GO:0009809 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0045551 GO:0048046 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

368

Amino Acids

39.83

Weight (kDa)

6.26

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	37 - 151	9.8e-25	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	191 - 290	3.8e-16	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21730 AT2G21890 AT4G39330 AT4G39330
fragaria_vesca	FvH4_1g23790 FvH4_1g23790 FvH4_1g23810
malus_domestica	MD07G1183600.v1.1 MD13G1280800.v1.1
prunus_persica	Prupe.6G161800_v2.0.a1 Prupe.6G162000_v2.0.a1 Prupe.6G162000_v2.0.a1
pyrus_communis	pycom15g30090
rosa_chinensis	RchiOBHm_Chr2g0119681 RchiOBHm_Chr2g0119731
rosa_laevigata	RLG00000018484 RLG00000018488
rosa_multiflora	Rmu_sc0001501.1_g000063 Rmu_sc0001501.1_g000064 Rmu_sc0001501.1_g000065 Rmu_sc0001501.1_g000091 Rmu_sc0018654.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124130 Rroxscaffold_2G00124200
rosa_rugosa	Rorug02G0222900 Rorug02G0223200
rosa_samantha	Rh2BG292100 Rh2BG292400
rosa_wichuraiana	Rw0G003780 Rw2G022420 Rw2G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	728
AccB1I	GGYRCC	1 cut(s)	728
AccB7I	CCANNNNNTGG	2 cut(s)	470, 785
AccI	GTMKAC	1 cut(s)	790
AciI	CCGC	1 cut(s)	442
AclWI	GGATC	5 cut(s)	288, 301, 503, 1016, 1029
AcsI	RAATTY	3 cut(s)	251, 1057, 1095
AfaI	GTAC	2 cut(s)	634, 730
AfiI	CCNNNNNNNGG	5 cut(s)	34, 234, 470, 646, 785
AflII	CTTAAG	1 cut(s)	794
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	5 cut(s)	256, 616, 696, 715, 802
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	2 cut(s)	644, 811
AluI	AGCT	2 cut(s)	644, 811
Alw21I	GWGCWC	2 cut(s)	441, 1037
Alw26I	GTCTC	2 cut(s)	305, 1080
AlwI	GGATC	5 cut(s)	288, 301, 503, 1016, 1029
AlwNI	CAGNNNCTG	3 cut(s)	470, 539, 758
ApeKI	GCWGC	4 cut(s)	50, 719, 881, 1042
ApoI	RAATTY	3 cut(s)	251, 1057, 1095
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AseI	ATTAAT	1 cut(s)	782
Asp718I	GGTACC	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	476
AsuC2I	CCSGG	1 cut(s)	493
AsuHPI	GGTGA	4 cut(s)	3, 180, 275, 349
BamHI	GGATCC	2 cut(s)	293, 1021
BanI	GGYRCC	1 cut(s)	728
Bbv12I	GWGCWC	2 cut(s)	441, 1037
BbvI	GCAGC	4 cut(s)	37, 731, 868, 1054
BccI	CCATC	5 cut(s)	104, 435, 718, 982, 1012
BceAI	ACGGC	1 cut(s)	541
BciT130I	CCWGG	1 cut(s)	540
BcnI	CCSGG	1 cut(s)	493
BcoDI	GTCTC	2 cut(s)	305, 1080
BfaI	CTAG	5 cut(s)	93, 566, 575, 936, 954
BfmI	CTRYAG	1 cut(s)	759
BfoI	RGCGCY	1 cut(s)	477
BfrI	CTTAAG	1 cut(s)	794
BisI	GCNGC	4 cut(s)	51, 720, 882, 1043
BlsI	GCNGC	4 cut(s)	52, 721, 883, 1044
BmcAI	AGTACT	1 cut(s)	634
Bme1390I	CCNGG	2 cut(s)	493, 540
BmiI	GGNNCC	3 cut(s)	295, 730, 1023
BmrFI	CCNGG	2 cut(s)	493, 540
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	2 cut(s)	868, 948
BmuI	ACTGGG	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	863
Bpu10I	CCTNAGC	1 cut(s)	645
BpuMI	CCSGG	1 cut(s)	493
BsaI	GGTCTC	1 cut(s)	1080
BsaJI	CCNNGG	1 cut(s)	732
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 234, 470, 646, 785
Bse1I	ACTGG	2 cut(s)	238, 846
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	732
BseGI	GGATG	1 cut(s)	939
BseLI	CCNNNNNNNGG	5 cut(s)	34, 234, 470, 646, 785
BseNI	ACTGG	2 cut(s)	238, 846
BseRI	GAGGAG	2 cut(s)	665, 668
BseXI	GCAGC	4 cut(s)	37, 731, 868, 1054
BseYI	CCCAGC	1 cut(s)	640
BsgI	GTGCAG	1 cut(s)	690
BshNI	GGYRCC	1 cut(s)	728
BsiHKAI	GWGCWC	2 cut(s)	441, 1037
BsiSI	CCGG	1 cut(s)	492
BslI	CCNNNNNNNGG	5 cut(s)	34, 234, 470, 646, 785
BsmAI	GTCTC	2 cut(s)	305, 1080
BsmI	GAATGC	1 cut(s)	163
Bso31I	GGTCTC	1 cut(s)	1080
Bsp1286I	GDGCHC	2 cut(s)	441, 1037
Bsp143I	GATC	4 cut(s)	265, 293, 495, 1021
Bsp19I	CCATGG	1 cut(s)	732
BspACI	CCGC	1 cut(s)	442
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	3 cut(s)	295, 730, 1023
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	5 cut(s)	288, 301, 503, 1016, 1029
BspT107I	GGYRCC	1 cut(s)	728
BspTI	CTTAAG	1 cut(s)	794
BspTNI	GGTCTC	1 cut(s)	1080
BsrI	ACTGG	2 cut(s)	238, 846
BssECI	CCNNGG	1 cut(s)	732
BssMI	GATC	4 cut(s)	265, 293, 495, 1021
BssT1I	CCWWGG	1 cut(s)	732
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	5 cut(s)	502, 625, 754, 820, 961
BstAFI	CTTAAG	1 cut(s)	794
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	2 cut(s)	645, 1104
BstDSI	CCRYGG	1 cut(s)	732
BstF5I	GGATG	1 cut(s)	939
BstH2I	RGCGCY	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	4 cut(s)	268, 296, 498, 1024
BstMAI	GTCTC	2 cut(s)	305, 1080
BstMBI	GATC	4 cut(s)	265, 293, 495, 1021
BstMWI	GCNNNNNNNGC	4 cut(s)	544, 767, 835, 1051
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	2 cut(s)	491, 538
BstSFI	CTRYAG	1 cut(s)	759
BstV1I	GCAGC	4 cut(s)	37, 731, 868, 1054
BstX2I	RGATCY	2 cut(s)	293, 1021
BstYI	RGATCY	2 cut(s)	293, 1021
BtgI	CCRYGG	1 cut(s)	732
BtgZI	GCGATG	3 cut(s)	129, 413, 737
BtsCI	GGATG	1 cut(s)	939
BtsIMutI	CAGTG	4 cut(s)	498, 839, 921, 957
Cac8I	GCNNGC	1 cut(s)	320
CaiI	CAGNNNCTG	3 cut(s)	470, 539, 758
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	476
Csp6I	GTAC	2 cut(s)	633, 729
CspCI	CAANNNNNGTGG	2 cut(s)	828, 863
CviAII	CATG	6 cut(s)	306, 377, 529, 733, 767, 1076
CviJI	RGCY	8 cut(s)	50, 538, 644, 659, 677, 811, 838, 1054
CviKI_1	RGCY	8 cut(s)	50, 538, 644, 659, 677, 811, 838, 1054
CviQI	GTAC	2 cut(s)	633, 729
DdeI	CTNAG	2 cut(s)	645, 1104
DpnI	GATC	4 cut(s)	267, 295, 497, 1023
DpnII	GATC	4 cut(s)	265, 293, 495, 1021
Eco130I	CCWWGG	1 cut(s)	732
Eco31I	GGTCTC	1 cut(s)	1080
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	6 cut(s)	309, 380, 532, 736, 770, 1079
FatI	CATG	6 cut(s)	305, 376, 528, 732, 766, 1075
FblI	GTMKAC	1 cut(s)	790
Fnu4HI	GCNGC	4 cut(s)	51, 720, 882, 1043
FokI	GGATG	1 cut(s)	926
Fsp4HI	GCNGC	4 cut(s)	51, 720, 882, 1043
FspBI	CTAG	5 cut(s)	93, 566, 575, 936, 954
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	4 cut(s)	51, 720, 882, 1043
GsaI	CCCAGC	1 cut(s)	644
GsuI	CTGGAG	1 cut(s)	863
HaeII	RGCGCY	1 cut(s)	477
HapII	CCGG	1 cut(s)	492
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	6 cut(s)	309, 380, 532, 736, 770, 1079
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	4 cut(s)	59, 467, 680, 992
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	4 cut(s)	3, 180, 275, 349
Hpy166II	GTNNAC	7 cut(s)	188, 424, 572, 791, 919, 947, 964
Hpy188I	TCNGA	3 cut(s)	157, 409, 1026
Hpy188III	TCNNGA	5 cut(s)	93, 172, 377, 449, 869
Hpy8I	GTNNAC	7 cut(s)	188, 424, 572, 791, 919, 947, 964
HpyAV	CCTTC	5 cut(s)	90, 254, 610, 709, 1076
HpyCH4III	ACNGT	5 cut(s)	502, 625, 754, 820, 961
HpyCH4V	TGCA	6 cut(s)	163, 205, 300, 707, 761, 884
HpyF10VI	GCNNNNNNNGC	4 cut(s)	544, 767, 835, 1051
HpyF3I	CTNAG	2 cut(s)	645, 1104
Hsp92II	CATG	6 cut(s)	309, 380, 532, 736, 770, 1079
HspAI	GCGC	1 cut(s)	474
KpnI	GGTACC	1 cut(s)	732
Kzo9I	GATC	4 cut(s)	265, 293, 495, 1021
LmnI	GCTCC	3 cut(s)	444, 481, 781
Lsp1109I	GCAGC	4 cut(s)	37, 731, 868, 1054
LweI	GCATC	2 cut(s)	868, 948
MaeI	CTAG	5 cut(s)	93, 566, 575, 936, 954
MaeIII	GTNAC	6 cut(s)	69, 118, 223, 244, 619, 814
MalI	GATC	4 cut(s)	267, 295, 497, 1023
MboI	GATC	4 cut(s)	265, 293, 495, 1021
MboII	GAAGA	3 cut(s)	29, 32, 54
MfeI	CAATTG	1 cut(s)	710
MflI	RGATCY	2 cut(s)	293, 1021
MhlI	GDGCHC	2 cut(s)	441, 1037
MluCI	AATT	8 cut(s)	210, 251, 594, 710, 744, 783, 1057, 1095
MnlI	CCTC	7 cut(s)	39, 89, 143, 380, 643, 646, 649
MseI	TTAA	3 cut(s)	663, 782, 795
MslI	CAYNNNNRTG	1 cut(s)	484
MspCI	CTTAAG	1 cut(s)	794
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	2 cut(s)	493, 540
MunI	CAATTG	1 cut(s)	710
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	4 cut(s)	544, 767, 835, 1051
NciI	CCSGG	1 cut(s)	493
NcoI	CCATGG	1 cut(s)	732
NdeII	GATC	4 cut(s)	265, 293, 495, 1021
NlaIII	CATG	6 cut(s)	309, 380, 532, 736, 770, 1079
NlaIV	GGNNCC	3 cut(s)	295, 730, 1023
NmuCI	GTSAC	3 cut(s)	69, 223, 244
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	1 cut(s)	376
PciI	ACATGT	1 cut(s)	305
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	4 cut(s)	59, 467, 680, 992
PflFI	GACNNNGTC	1 cut(s)	576
PflMI	CCANNNNNTGG	2 cut(s)	470, 785
PkrI	GCNGC	4 cut(s)	52, 721, 883, 1044
PscI	ACATGT	1 cut(s)	305
PshBI	ATTAAT	1 cut(s)	782
Psp6I	CCWGG	1 cut(s)	538
PspFI	CCCAGC	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	3 cut(s)	295, 730, 1023
PsrI	GAACNNNNNNTAC	2 cut(s)	747, 779
PstI	CTGCAG	1 cut(s)	763
PstNI	CAGNNNCTG	3 cut(s)	470, 539, 758
PsuI	RGATCY	2 cut(s)	293, 1021
PsyI	GACNNNGTC	1 cut(s)	576
RsaI	GTAC	2 cut(s)	634, 730
RsaNI	GTAC	2 cut(s)	633, 729
RseI	CAYNNNNRTG	1 cut(s)	484
SaqAI	TTAA	3 cut(s)	663, 782, 795
SatI	GCNGC	4 cut(s)	51, 720, 882, 1043
Sau3AI	GATC	4 cut(s)	265, 293, 495, 1021
ScaI	AGTACT	1 cut(s)	634
ScrFI	CCNGG	2 cut(s)	493, 540
SduI	GDGCHC	2 cut(s)	441, 1037
SetI	ASST	8 cut(s)	39, 265, 362, 571, 580, 621, 646, 813
SfaNI	GCATC	2 cut(s)	868, 948
SfcI	CTRYAG	1 cut(s)	759
SmiMI	CAYNNNNRTG	1 cut(s)	484
SmlI	CTYRAG	1 cut(s)	794
SmoI	CTYRAG	1 cut(s)	794
Sse9I	AATT	8 cut(s)	210, 251, 594, 710, 744, 783, 1057, 1095
SsiI	CCGC	1 cut(s)	442
SspMI	CTAG	5 cut(s)	93, 566, 575, 936, 954
StyD4I	CCNGG	2 cut(s)	491, 538
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	5 cut(s)	502, 625, 754, 820, 961
TasI	AATT	8 cut(s)	210, 251, 594, 710, 744, 783, 1057, 1095
TatI	WGTACW	1 cut(s)	632
TfiI	GAWTC	4 cut(s)	59, 467, 680, 992
Tru1I	TTAA	3 cut(s)	663, 782, 795
Tru9I	TTAA	3 cut(s)	663, 782, 795
TscAI	CASTG	4 cut(s)	505, 846, 928, 964
TseFI	GTSAC	3 cut(s)	69, 223, 244
TseI	GCWGC	4 cut(s)	50, 719, 881, 1042
Tsp45I	GTSAC	3 cut(s)	69, 223, 244
TspDTI	ATGAA	3 cut(s)	74, 530, 755
TspGWI	ACGGA	1 cut(s)	932
TspRI	CASTG	4 cut(s)	505, 846, 928, 964
Tth111I	GACNNNGTC	1 cut(s)	576
Van91I	CCANNNNNTGG	2 cut(s)	470, 785
Vha464I	CTTAAG	1 cut(s)	794
VspI	ATTAAT	1 cut(s)	782
XapI	RAATTY	3 cut(s)	251, 1057, 1095
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1015
XmiI	GTMKAC	1 cut(s)	790
XspI	CTAG	5 cut(s)	93, 566, 575, 936, 954
ZrmI	AGTACT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.