Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004559

Physical Location & Seq

Genomic Coordinates Forward (+)

30646547 .. 30649262

Gene Structure 2716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018484

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCAAAATCACCAGAAGAAGAACACCCTCAGAAAGTTTTTGGTTGGGCTGCCAGAGATTCTTCTGGGTCACTTTCCCTCTTTCATTTCTCTAGAAGGGAAAATGCCGATGGTGATGTAACAATAAAAGTCCTCTATTGTGGGGTTTGCCATTCAGACTTGCACTCTGTCAAGAACGATTGGGGGTTCACCCACTATCCTATTGTTCCTGGGCATGAAATTGTTGGTGTTGTGACCAAAACTGGGAAAAGTGTGACGAAATTCAAAGAAGGTGATCGTGTAGGAGTTGGTGTTATGGTGGGATCCTGCAACACATGTGAGACTTGCCAGCAGGACTTGGAGAACTATTGCCCGAAAGTGATATTCACCTATAACTCCCTCAATCATGACAAAACTAAAACTTATGGTGGTTATTCTGATATGATTGTTGTTGACCATCGCTTTGTGCTCCGCTTTCCCGATAACTTACCCCCAGATTCTGGCGCTCCACTTCTATGTGCCGGGATCACTGTGTATAGTCCAATGAAGTATTACGGCATGACAGAGCCTGGAAAGCATTTGGGCGTGGCAGGATTAGGTGGACTAGGTCATATTGCTGTCAAAATTGGTAAGGCATTTGGTTTGAAGGTAACTGTCATCAGCACTTCCCCAGCTAAGGAGGATGAGGCTATTAACAGACTTGGGGCTGATTCTTTTGTTGTTTCAACTGACCCTGCACAATTGACGGCAGCGATGGGCACCATGGATTACATAATTGACACAGTATCTGCAGTTCATGCCCTTGCTCCATTAATTGGTCTACTTAAGCTGAATGGGAAGCTGGTTACCGTGGGTTTGCCTAATAAGCCACTAGAGTTGCCTATATTTCCATTGGTTCTGGGGAGGAAGCTCGTTGGTGGAAGCGACGTTGGAGGGATAAAAGAGACGCAGGAGATGCTTGACTTTTGTGCCAAACACAATATTACCTCCGAAATCGAGCTAATTAAAATGGACTACATTAACACAGCTATGGAACGACTTGCCAAATCAGATGTCAGGTATCGGTTTGTGATCGATGTGGGGAACTCCTTGTCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009735 GO:0009808 GO:0009809 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0045551 GO:0048046 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

360

Amino Acids

38.91

Weight (kDa)

6.46

Isoelectric Point (pI)

27.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	37 - 154	9e-28	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	194 - 317	8.2e-20	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21730 AT2G21890 AT4G39330 AT4G39330
fragaria_vesca	FvH4_1g23790 FvH4_1g23790 FvH4_1g23810
malus_domestica	MD07G1183600.v1.1 MD13G1280800.v1.1
prunus_persica	Prupe.6G161800_v2.0.a1 Prupe.6G162000_v2.0.a1 Prupe.6G162000_v2.0.a1
pyrus_communis	pycom15g30090
rosa_chinensis	RchiOBHm_Chr2g0119681 RchiOBHm_Chr2g0119731
rosa_laevigata	RLG00000018484 RLG00000018488
rosa_multiflora	Rmu_sc0001501.1_g000063 Rmu_sc0001501.1_g000064 Rmu_sc0001501.1_g000065 Rmu_sc0001501.1_g000091 Rmu_sc0018654.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124130 Rroxscaffold_2G00124200
rosa_rugosa	Rorug02G0222900 Rorug02G0223200
rosa_samantha	Rh2BG292100 Rh2BG292400
rosa_wichuraiana	Rw0G003780 Rw2G022420 Rw2G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	737
AccB7I	CCANNNNNTGG	2 cut(s)	479, 794
AccI	GTMKAC	1 cut(s)	799
AciI	CCGC	1 cut(s)	451
AclWI	GGATC	3 cut(s)	297, 310, 512
AcsI	RAATTY	1 cut(s)	260
AfiI	CCNNNNNNNGG	4 cut(s)	243, 479, 655, 794
AflII	CTTAAG	1 cut(s)	803
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	265, 625, 705
AjnI	CCWGG	2 cut(s)	208, 547
AluBI	AGCT	6 cut(s)	653, 808, 820, 889, 979, 1007
AluI	AGCT	6 cut(s)	653, 808, 820, 889, 979, 1007
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	314, 917
AlwI	GGATC	3 cut(s)	297, 310, 512
AlwNI	CAGNNNCTG	3 cut(s)	479, 548, 767
ApeKI	GCWGC	2 cut(s)	50, 728
ApoI	RAATTY	1 cut(s)	260
ArsI	GACNNNNNNTTYG	4 cut(s)	425, 457, 1017, 1049
AseI	ATTAAT	1 cut(s)	791
AspLEI	GCGC	1 cut(s)	485
AsuC2I	CCSGG	1 cut(s)	502
AsuHPI	GGTGA	5 cut(s)	3, 125, 181, 284, 358
BaeGI	GKGCMC	1 cut(s)	740
BamHI	GGATCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	37, 740
BccI	CCATC	3 cut(s)	104, 444, 727
BceAI	ACGGC	2 cut(s)	550, 741
BciT130I	CCWGG	2 cut(s)	210, 549
BcnI	CCSGG	1 cut(s)	502
BcoDI	GTCTC	2 cut(s)	314, 917
BfaI	CTAG	3 cut(s)	93, 584, 851
BfmI	CTRYAG	1 cut(s)	768
BfoI	RGCGCY	1 cut(s)	486
BfrI	CTTAAG	1 cut(s)	803
BisI	GCNGC	2 cut(s)	51, 729
BlsI	GCNGC	2 cut(s)	52, 730
Bme1390I	CCNGG	3 cut(s)	210, 502, 549
BmiI	GGNNCC	2 cut(s)	304, 739
BmrFI	CCNGG	3 cut(s)	210, 502, 549
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	924
BmuI	ACTGGG	1 cut(s)	252
Bpu10I	CCTNAGC	1 cut(s)	654
BpuMI	CCSGG	1 cut(s)	502
Bsa29I	ATCGAT	1 cut(s)	1053
BsaJI	CCNNGG	3 cut(s)	209, 741, 828
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	4 cut(s)	243, 479, 655, 794
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	2 cut(s)	210, 549
BseCI	ATCGAT	1 cut(s)	1053
BseDI	CCNNGG	3 cut(s)	209, 741, 828
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	4 cut(s)	243, 479, 655, 794
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	247
BseSI	GKGCMC	1 cut(s)	740
BseXI	GCAGC	2 cut(s)	37, 740
BseYI	CCCAGC	1 cut(s)	649
BsgI	GTGCAG	1 cut(s)	699
BshNI	GGYRCC	1 cut(s)	737
BshVI	ATCGAT	1 cut(s)	1053
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	501
BslI	CCNNNNNNNGG	4 cut(s)	243, 479, 655, 794
BsmAI	GTCTC	2 cut(s)	314, 917
BsmBI	CGTCTC	1 cut(s)	917
Bsp1286I	GDGCHC	2 cut(s)	450, 740
Bsp143I	GATC	4 cut(s)	274, 302, 504, 1050
Bsp19I	CCATGG	1 cut(s)	741
BspACI	CCGC	1 cut(s)	451
BspCNI	CTCAG	1 cut(s)	43
BspDI	ATCGAT	1 cut(s)	1053
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	304, 739
BspMAI	CTGCAG	1 cut(s)	772
BspPI	GGATC	3 cut(s)	297, 310, 512
BspT107I	GGYRCC	1 cut(s)	737
BspTI	CTTAAG	1 cut(s)	803
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	209, 741, 828
BssMI	GATC	4 cut(s)	274, 302, 504, 1050
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	2 cut(s)	210, 549
Bst4CI	ACNGT	4 cut(s)	511, 634, 763, 829
BstAFI	CTTAAG	1 cut(s)	803
BstAPI	GCANNNNNTGC	2 cut(s)	776, 934
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	3 cut(s)	30, 654, 1074
BstDSI	CCRYGG	2 cut(s)	741, 828
BstEII	GGTNACC	1 cut(s)	823
BstF5I	GGATG	1 cut(s)	667
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	4 cut(s)	277, 305, 507, 1053
BstMAI	GTCTC	2 cut(s)	314, 917
BstMBI	GATC	4 cut(s)	274, 302, 504, 1050
BstMWI	GCNNNNNNNGC	4 cut(s)	553, 776, 844, 934
BstNI	CCWGG	2 cut(s)	210, 549
BstNSI	RCATGY	1 cut(s)	318
BstPI	GGTNACC	1 cut(s)	823
BstSCI	CCNGG	3 cut(s)	208, 500, 547
BstSFI	CTRYAG	1 cut(s)	768
BstSLI	GKGCMC	1 cut(s)	740
BstV1I	GCAGC	2 cut(s)	37, 740
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
Bsu15I	ATCGAT	1 cut(s)	1053
BsuTUI	ATCGAT	1 cut(s)	1053
BtgI	CCRYGG	2 cut(s)	741, 828
BtgZI	GCGATG	2 cut(s)	422, 746
BtsCI	GGATG	1 cut(s)	667
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	329
CaiI	CAGNNNCTG	3 cut(s)	479, 548, 767
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	485
ClaI	ATCGAT	1 cut(s)	1053
CseI	GACGC	1 cut(s)	934
CspCI	CAANNNNNGTGG	2 cut(s)	837, 872
CviAII	CATG	6 cut(s)	215, 315, 386, 538, 742, 776
DdeI	CTNAG	3 cut(s)	30, 654, 1074
DpnI	GATC	4 cut(s)	276, 304, 506, 1052
DpnII	GATC	4 cut(s)	274, 302, 504, 1050
Eco130I	CCWWGG	1 cut(s)	741
Eco91I	GGTNACC	1 cut(s)	823
EcoO65I	GGTNACC	1 cut(s)	823
EcoRII	CCWGG	2 cut(s)	208, 547
EcoT14I	CCWWGG	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	1 cut(s)	917
FaeI	CATG	6 cut(s)	218, 318, 389, 541, 745, 779
FatI	CATG	6 cut(s)	214, 314, 385, 537, 741, 775
FblI	GTMKAC	1 cut(s)	799
Fnu4HI	GCNGC	2 cut(s)	51, 729
FokI	GGATG	1 cut(s)	674
Fsp4HI	GCNGC	2 cut(s)	51, 729
FspBI	CTAG	3 cut(s)	93, 584, 851
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	2 cut(s)	51, 729
GsaI	CCCAGC	1 cut(s)	653
HaeII	RGCGCY	1 cut(s)	486
HapII	CCGG	1 cut(s)	501
HgaI	GACGC	1 cut(s)	934
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	6 cut(s)	218, 318, 389, 541, 745, 779
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	3 cut(s)	59, 476, 689
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	5 cut(s)	3, 125, 181, 284, 358
Hpy166II	GTNNAC	4 cut(s)	189, 433, 581, 800
Hpy188I	TCNGA	5 cut(s)	33, 157, 418, 970, 1030
Hpy188III	TCNNGA	4 cut(s)	93, 172, 386, 458
Hpy8I	GTNNAC	4 cut(s)	189, 433, 581, 800
Hpy99I	CGWCG	1 cut(s)	908
HpyAV	CCTTC	3 cut(s)	90, 263, 619
HpyCH4III	ACNGT	4 cut(s)	511, 634, 763, 829
HpyCH4IV	ACGT	1 cut(s)	906
HpyCH4V	TGCA	4 cut(s)	163, 309, 716, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	553, 776, 844, 934
HpyF3I	CTNAG	3 cut(s)	30, 654, 1074
HpySE526I	ACGT	1 cut(s)	906
Hsp92II	CATG	6 cut(s)	218, 318, 389, 541, 745, 779
HspAI	GCGC	1 cut(s)	483
Kzo9I	GATC	4 cut(s)	274, 302, 504, 1050
LmnI	GCTCC	3 cut(s)	453, 490, 790
Lsp1109I	GCAGC	2 cut(s)	37, 740
LweI	GCATC	1 cut(s)	924
MaeI	CTAG	3 cut(s)	93, 584, 851
MaeII	ACGT	1 cut(s)	906
MaeIII	GTNAC	6 cut(s)	69, 118, 232, 253, 628, 823
MalI	GATC	4 cut(s)	276, 304, 506, 1052
MboI	GATC	4 cut(s)	274, 302, 504, 1050
MboII	GAAGA	3 cut(s)	29, 32, 54
MfeI	CAATTG	1 cut(s)	719
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	2 cut(s)	450, 740
MluCI	AATT	7 cut(s)	219, 260, 603, 719, 753, 792, 981
MmeI	TCCRAC	1 cut(s)	889
MnlI	CCTC	9 cut(s)	39, 89, 143, 389, 652, 658, 876, 905, 976
MseI	TTAA	5 cut(s)	672, 791, 804, 984, 999
MslI	CAYNNNNRTG	2 cut(s)	493, 1007
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	3 cut(s)	210, 502, 549
MunI	CAATTG	1 cut(s)	719
MvaI	CCWGG	2 cut(s)	210, 549
MwoI	GCNNNNNNNGC	4 cut(s)	553, 776, 844, 934
NciI	CCSGG	1 cut(s)	502
NcoI	CCATGG	1 cut(s)	741
NdeII	GATC	4 cut(s)	274, 302, 504, 1050
NlaIII	CATG	6 cut(s)	218, 318, 389, 541, 745, 779
NlaIV	GGNNCC	2 cut(s)	304, 739
NmuCI	GTSAC	3 cut(s)	69, 232, 253
NspI	RCATGY	1 cut(s)	318
PagI	TCATGA	1 cut(s)	385
PciI	ACATGT	1 cut(s)	314
PfeI	GAWTC	3 cut(s)	59, 476, 689
PflFI	GACNNNGTC	1 cut(s)	585
PflMI	CCANNNNNTGG	2 cut(s)	479, 794
PkrI	GCNGC	2 cut(s)	52, 730
PscI	ACATGT	1 cut(s)	314
PshBI	ATTAAT	1 cut(s)	791
Psp6I	CCWGG	2 cut(s)	208, 547
PspEI	GGTNACC	1 cut(s)	823
PspFI	CCCAGC	1 cut(s)	649
PspGI	CCWGG	2 cut(s)	208, 547
PspN4I	GGNNCC	2 cut(s)	304, 739
PsrI	GAACNNNNNNTAC	2 cut(s)	756, 788
PstI	CTGCAG	1 cut(s)	772
PstNI	CAGNNNCTG	3 cut(s)	479, 548, 767
PsuI	RGATCY	1 cut(s)	302
PsyI	GACNNNGTC	1 cut(s)	585
RseI	CAYNNNNRTG	2 cut(s)	493, 1007
SaqAI	TTAA	5 cut(s)	672, 791, 804, 984, 999
SatI	GCNGC	2 cut(s)	51, 729
Sau3AI	GATC	4 cut(s)	274, 302, 504, 1050
ScrFI	CCNGG	3 cut(s)	210, 502, 549
SduI	GDGCHC	2 cut(s)	450, 740
SfaNI	GCATC	1 cut(s)	924
SfcI	CTRYAG	1 cut(s)	768
SmiMI	CAYNNNNRTG	2 cut(s)	493, 1007
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	7 cut(s)	219, 260, 603, 719, 753, 792, 981
SsiI	CCGC	1 cut(s)	451
SspI	AATATT	1 cut(s)	961
SspMI	CTAG	3 cut(s)	93, 584, 851
StyD4I	CCNGG	3 cut(s)	208, 500, 547
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	4 cut(s)	511, 634, 763, 829
TaiI	ACGT	1 cut(s)	909
TaqI	TCGA	2 cut(s)	975, 1053
TasI	AATT	7 cut(s)	219, 260, 603, 719, 753, 792, 981
TfiI	GAWTC	3 cut(s)	59, 476, 689
Tru1I	TTAA	5 cut(s)	672, 791, 804, 984, 999
Tru9I	TTAA	5 cut(s)	672, 791, 804, 984, 999
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	3 cut(s)	69, 232, 253
TseI	GCWGC	2 cut(s)	50, 728
Tsp45I	GTSAC	3 cut(s)	69, 232, 253
TspDTI	ATGAA	4 cut(s)	74, 231, 539, 764
TspRI	CASTG	1 cut(s)	514
Tth111I	GACNNNGTC	1 cut(s)	585
Van91I	CCANNNNNTGG	2 cut(s)	479, 794
Vha464I	CTTAAG	1 cut(s)	803
VspI	ATTAAT	1 cut(s)	791
XapI	RAATTY	1 cut(s)	260
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	1 cut(s)	318
XmiI	GTMKAC	1 cut(s)	799
XspI	CTAG	3 cut(s)	93, 584, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.