AT2G21730

Cinnamyl alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
9279931 .. 9282178
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21730.1

Sequence Viewer

Length: 1131 bp
ATGGTAGATCAAAATAAAGCATTTGGTTGGGCGGCCAACGACGAATCGGGCGTCCTCTCTCCATTTCATTTCTCTAGAAGAGAAAATGGTGAGAACGATGTAACAGTGAAGATCTTGTTCTGTGGTGTTTGTCACTCTGATCTTCATACCATCAAGAACCATTGGGGATTCTCTCGTTACCCCATTATTCCCGGGCATGAAATCGTTGGAATAGCAACAAAAGTTGGGAAGAATGTGACAAAGTTTAAAGAAGGAGACCGAGTAGGAGTAGGCGTAATAATCGGTTCATGCCAATCATGTGAATCATGTAACCAAGACTTAGAAAACTATTGTCCTAAAGTCGTTTTCACATACAACTCTCGTTCCTCTGACGGAACCAGCAGAAACCAAGGTGGTTATTCCGACGTAATTGTTGTCGATCACCGCTTTGTCCTAAGCATTCCCGATGGTTTACCAAGCGATTCAGGCGCGCCGCTGCTCTGTGCTGGAATCACTGTGTACAGTCCCATGAAGTATTATGGCATGACTAAAGAATCAGGGAAACGTTTAGGTGTGAATGGACTTGGTGGACTTGGTCATATCGCTGTTAAGATTGGTAAAGCCTTTGGTTTAAGAGTTACTGTGATTAGTAGGTCATCAGAAAAAGAGAGAGAAGCAATTGATCGGCTTGGTGCTGATTCGTTTCTTGTTACAACGGATTCTCAAAAGATGAAGGAAGCGGTTGGAACTATGGATTTCATTATCGATACGGTATCAGCAGAACATGCTCTATTACCGTTGTTTAGTTTGCTTAAAGTGAATGGAAAGCTTGTGGCTTTAGGCTTACCGGAGAAGCCACTCGACCTGCCAATTTTCTCTCTAGTTCTCGGAAGGAAAATGGTGGGAGGAAGTCAGATTGGAGGGATGAAGGAGACACAAGAGATGCTTGAGTTCTGTGCCAAGCATAAAATCGTTTCGGATATTGAGCTCATAAAGATGAGTGATATCAACTCTGCGATGGACCGTTTGGCTAAATCTGATGTCAGGTACCGGTTCGTGATCGATGTGGCCAACTCTTTACTCCCTGAGTCGTCAGCTGAGATTTTAACGGAGCAGGTGGACCATGGAGTCTCGATCACGTCTAGATTCTGA

Protein Analysis

376

Amino Acids

40.91

Weight (kDa)

6.56

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 30 - 149 2.1e-26 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 190 - 313 9.6e-20 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1084
AasI GACNNNNNNGTC 1 cut(s) 1106
Acc36I ACCTGC 2 cut(s) 852, 1084
Acc65I GGTACC 1 cut(s) 1026
AccB1I GGYRCC 1 cut(s) 1026
AccII CGCG 1 cut(s) 470
AciI CCGC 4 cut(s) 32, 424, 473, 719
AclI AACGTT 1 cut(s) 544
AcoI YGGCCR 2 cut(s) 33, 1047
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 500, 1028
AgeI ACCGGT 1 cut(s) 1029
AjiI CACGTC 1 cut(s) 1119
AluBI AGCT 3 cut(s) 808, 967, 1076
AluI AGCT 3 cut(s) 808, 967, 1076
Alw21I GWGCWC 1 cut(s) 969
Alw26I GTCTC 3 cut(s) 249, 905, 1114
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 2 cut(s) 33, 1047
ApeKI GCWGC 1 cut(s) 475
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
AscI GGCGCGCC 1 cut(s) 468
AsiGI ACCGGT 1 cut(s) 1029
Asp718I GGTACC 1 cut(s) 1026
AspLEI GCGC 2 cut(s) 470, 472
AspS9I GGNCC 2 cut(s) 1000, 1099
AsuC2I CCSGG 2 cut(s) 192, 193
AsuHPI GGTGA 2 cut(s) 101, 413
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 2 cut(s) 1000, 1099
BalI TGGCCA 1 cut(s) 1049
BanI GGYRCC 1 cut(s) 1026
BanII GRGCYC 1 cut(s) 969
Bbv12I GWGCWC 1 cut(s) 969
BbvI GCAGC 1 cut(s) 462
BccI CCATC 3 cut(s) 158, 440, 991
BcnI CCSGG 2 cut(s) 192, 193
BcoDI GTCTC 3 cut(s) 249, 905, 1114
BfaI CTAG 3 cut(s) 75, 860, 1122
BfuAI ACCTGC 2 cut(s) 852, 1084
BglII AGATCT 1 cut(s) 111
BisI GCNGC 3 cut(s) 33, 473, 476
BlsI GCNGC 3 cut(s) 34, 474, 477
Bme1390I CCNGG 2 cut(s) 192, 193
Bme18I GGWCC 2 cut(s) 1000, 1099
BmeT110I CYCGRG 1 cut(s) 191
BmgBI CACGTC 1 cut(s) 1119
BmgT120I GGNCC 2 cut(s) 1000, 1099
BmiI GGNNCC 2 cut(s) 376, 1028
BmrFI CCNGG 2 cut(s) 192, 193
BmsI GCATC 1 cut(s) 912
Bpu10I CCTNAGC 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 947
BpuMI CCSGG 2 cut(s) 192, 193
Bsa29I ATCGAT 2 cut(s) 744, 1041
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 3 cut(s) 191, 388, 1102
BsaWI WCCGGW 2 cut(s) 826, 1029
BsaXI ACNNNNNCTCC 4 cut(s) 246, 258, 276, 288
Bse118I RCCGGY 1 cut(s) 1029
BseCI ATCGAT 2 cut(s) 744, 1041
BseDI CCNNGG 3 cut(s) 191, 388, 1102
BseGI GGATG 1 cut(s) 909
BseMII CTCAG 2 cut(s) 1056, 1068
BsePI GCGCGC 1 cut(s) 468
BseXI GCAGC 1 cut(s) 462
Bsh1236I CGCG 1 cut(s) 470
BshFI GGCC 2 cut(s) 35, 1049
BshNI GGYRCC 1 cut(s) 1026
BshTI ACCGGT 1 cut(s) 1029
BshVI ATCGAT 2 cut(s) 744, 1041
BsiHKAI GWGCWC 1 cut(s) 969
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 3 cut(s) 192, 827, 1030
BslFI GGGAC 1 cut(s) 489
BsmAI GTCTC 3 cut(s) 249, 905, 1114
BsmFI GGGAC 1 cut(s) 489
BsmI GAATGC 1 cut(s) 438
BsnI GGCC 2 cut(s) 35, 1049
Bso31I GGTCTC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 969
Bsp1407I TGTACA 1 cut(s) 498
Bsp143I GATC 7 cut(s) 7, 111, 139, 418, 661, 1038, 1113
Bsp19I CCATGG 1 cut(s) 1102
BspACI CCGC 4 cut(s) 32, 424, 473, 719
BspANI GGCC 2 cut(s) 35, 1049
BspCNI CTCAG 2 cut(s) 1057, 1069
BspDI ATCGAT 2 cut(s) 744, 1041
BspFNI CGCG 1 cut(s) 470
BspLI GGNNCC 2 cut(s) 376, 1028
BspMI ACCTGC 2 cut(s) 852, 1084
BspT107I GGYRCC 1 cut(s) 1026
BspTNI GGTCTC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 1029
BsrGI TGTACA 1 cut(s) 498
BssAI RCCGGY 1 cut(s) 1029
BssECI CCNNGG 3 cut(s) 191, 388, 1102
BssHII GCGCGC 1 cut(s) 468
BssMI GATC 7 cut(s) 7, 111, 139, 418, 661, 1038, 1113
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 2 cut(s) 388, 1102
Bst4CI ACNGT 7 cut(s) 106, 496, 503, 622, 751, 777, 1004
Bst6I CTCTTC 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 764
BstAUI TGTACA 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 470
BstDEI CTNAG 4 cut(s) 319, 434, 1065, 1077
BstDSI CCRYGG 1 cut(s) 1102
BstF5I GGATG 1 cut(s) 909
BstFNI CGCG 1 cut(s) 470
BstHHI GCGC 2 cut(s) 470, 472
BstKTI GATC 7 cut(s) 10, 114, 142, 421, 664, 1041, 1116
BstMAI GTCTC 3 cut(s) 249, 905, 1114
BstMBI GATC 7 cut(s) 7, 111, 139, 418, 661, 1038, 1113
BstMWI GCNNNNNNNGC 2 cut(s) 465, 764
BstNSI RCATGY 1 cut(s) 767
BstSCI CCNGG 2 cut(s) 190, 191
BstUI CGCG 1 cut(s) 470
BstV1I GCAGC 1 cut(s) 462
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
Bsu15I ATCGAT 2 cut(s) 744, 1041
BsuRI GGCC 2 cut(s) 35, 1049
BsuTUI ATCGAT 2 cut(s) 744, 1041
BtgI CCRYGG 1 cut(s) 1102
BtgZI GCGATG 1 cut(s) 1010
BtrI CACGTC 1 cut(s) 1119
BtsCI GGATG 1 cut(s) 909
BtsIMutI CAGTG 2 cut(s) 111, 492
BveI ACCTGC 2 cut(s) 852, 1084
Cac8I GCNNGC 1 cut(s) 470
CfoI GCGC 2 cut(s) 470, 472
Cfr10I RCCGGY 1 cut(s) 1029
Cfr13I GGNCC 2 cut(s) 1000, 1099
Cfr9I CCCGGG 1 cut(s) 191
ClaI ATCGAT 2 cut(s) 744, 1041
CseI GACGC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 499, 1027
CspAI ACCGGT 1 cut(s) 1029
CviAII CATG 8 cut(s) 197, 288, 297, 306, 508, 523, 764, 1103
CviQI GTAC 2 cut(s) 499, 1027
DdeI CTNAG 4 cut(s) 319, 434, 1065, 1077
DpnI GATC 7 cut(s) 9, 113, 141, 420, 663, 1040, 1115
DpnII GATC 7 cut(s) 7, 111, 139, 418, 661, 1038, 1113
DraI TTTAAA 1 cut(s) 247
DrdI GACNNNNNNGTC 1 cut(s) 1106
DseDI GACNNNNNNGTC 1 cut(s) 1106
EaeI YGGCCR 2 cut(s) 33, 1047
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 967
Eco130I CCWWGG 2 cut(s) 388, 1102
Eco24I GRGCYC 1 cut(s) 969
Eco31I GGTCTC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 985
Eco47I GGWCC 2 cut(s) 1000, 1099
Eco53kI GAGCTC 1 cut(s) 967
Eco88I CYCGRG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 967
EcoRV GATATC 1 cut(s) 985
EcoT14I CCWWGG 2 cut(s) 388, 1102
EcoT38I GRGCYC 1 cut(s) 969
ErhI CCWWGG 2 cut(s) 388, 1102
FaeI CATG 8 cut(s) 200, 291, 300, 309, 511, 526, 767, 1106
FalI AAGNNNNNCTT 2 cut(s) 909, 941
FaqI GGGAC 1 cut(s) 489
FatI CATG 8 cut(s) 196, 287, 296, 305, 507, 522, 763, 1102
Fnu4HI GCNGC 3 cut(s) 33, 473, 476
FokI GGATG 1 cut(s) 916
FriOI GRGCYC 1 cut(s) 969
Fsp4HI GCNGC 3 cut(s) 33, 473, 476
FspBI CTAG 3 cut(s) 75, 860, 1122
GlaI GCGC 2 cut(s) 469, 471
GluI GCNGC 3 cut(s) 33, 473, 476
HaeIII GGCC 2 cut(s) 35, 1049
HapII CCGG 3 cut(s) 192, 827, 1030
HgaI GACGC 1 cut(s) 40
HhaI GCGC 2 cut(s) 470, 472
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 8 cut(s) 200, 291, 300, 309, 511, 526, 767, 1106
Hin6I GCGC 2 cut(s) 468, 470
HinP1I GCGC 2 cut(s) 468, 470
HindIII AAGCTT 1 cut(s) 806
HpaII CCGG 3 cut(s) 192, 827, 1030
HphI GGTGA 2 cut(s) 101, 413
Hpy166II GTNNAC 4 cut(s) 452, 499, 569, 1099
Hpy188I TCNGA 9 cut(s) 139, 370, 403, 640, 869, 894, 958, 1018, 1130
Hpy188III TCNNGA 6 cut(s) 75, 154, 443, 1036, 1111, 1122
Hpy8I GTNNAC 4 cut(s) 452, 499, 569, 1099
Hpy99I CGWCG 2 cut(s) 44, 407
HpyAV CCTTC 4 cut(s) 245, 706, 864, 901
HpyCH4III ACNGT 7 cut(s) 106, 496, 503, 622, 751, 777, 1004
HpyCH4IV ACGT 3 cut(s) 405, 544, 1118
HpyF10VI GCNNNNNNNGC 2 cut(s) 465, 764
HpyF3I CTNAG 4 cut(s) 319, 434, 1065, 1077
HpySE526I ACGT 3 cut(s) 405, 544, 1118
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 8 cut(s) 200, 291, 300, 309, 511, 526, 767, 1106
HspAI GCGC 2 cut(s) 468, 470
KpnI GGTACC 1 cut(s) 1030
Kzo9I GATC 7 cut(s) 7, 111, 139, 418, 661, 1038, 1113
LmnI GCTCC 1 cut(s) 1090
Lsp1109I GCAGC 1 cut(s) 462
LweI GCATC 1 cut(s) 912
MaeI CTAG 3 cut(s) 75, 860, 1122
MaeII ACGT 3 cut(s) 405, 544, 1118
MaeIII GTNAC 7 cut(s) 100, 131, 176, 235, 308, 616, 688
MalI GATC 7 cut(s) 9, 113, 141, 420, 663, 1040, 1115
MboI GATC 7 cut(s) 7, 111, 139, 418, 661, 1038, 1113
MboII GAAGA 4 cut(s) 90, 121, 134, 241
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 969
MlsI TGGCCA 1 cut(s) 1049
MluCI AATT 3 cut(s) 408, 657, 849
MluNI TGGCCA 1 cut(s) 1049
MlyI GAGTC 2 cut(s) 1076, 1116
MmeI TCCRAC 3 cut(s) 187, 426, 703
MnlI CCTC 4 cut(s) 65, 376, 878, 893
Mox20I TGGCCA 1 cut(s) 1049
MscI TGGCCA 1 cut(s) 1049
MseI TTAA 5 cut(s) 246, 588, 611, 792, 1085
MslI CAYNNNNRTG 1 cut(s) 974
Msp20I TGGCCA 1 cut(s) 1049
MspA1I CMGCKG 2 cut(s) 475, 1076
MspI CCGG 3 cut(s) 192, 827, 1030
MspR9I CCNGG 2 cut(s) 192, 193
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 1 cut(s) 438
MvnI CGCG 1 cut(s) 470
MwoI GCNNNNNNNGC 2 cut(s) 465, 764
NciI CCSGG 2 cut(s) 192, 193
NcoI CCATGG 1 cut(s) 1102
NdeII GATC 7 cut(s) 7, 111, 139, 418, 661, 1038, 1113
NlaIII CATG 8 cut(s) 200, 291, 300, 309, 511, 526, 767, 1106
NlaIV GGNNCC 2 cut(s) 376, 1028
NmuCI GTSAC 2 cut(s) 131, 235
NspI RCATGY 1 cut(s) 767
PalAI GGCGCGCC 1 cut(s) 468
PaqCI CACCTGC 1 cut(s) 1084
PauI GCGCGC 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 438
PfeI GAWTC 9 cut(s) 44, 168, 302, 461, 489, 533, 677, 698, 1125
PflFI GACNNNGTC 1 cut(s) 573
PinAI ACCGGT 1 cut(s) 1029
PkrI GCNGC 3 cut(s) 34, 474, 477
PleI GAGTC 2 cut(s) 1075, 1115
PpsI GAGTC 2 cut(s) 1075, 1115
Psp124BI GAGCTC 1 cut(s) 969
Psp1406I AACGTT 1 cut(s) 544
PspN4I GGNNCC 2 cut(s) 376, 1028
PspPI GGNCC 2 cut(s) 1000, 1099
PsuI RGATCY 1 cut(s) 111
PsyI GACNNNGTC 1 cut(s) 573
PteI GCGCGC 1 cut(s) 468
PvuII CAGCTG 1 cut(s) 1076
RsaI GTAC 2 cut(s) 500, 1028
RsaNI GTAC 2 cut(s) 499, 1027
RseI CAYNNNNRTG 1 cut(s) 974
SacI GAGCTC 1 cut(s) 969
SaqAI TTAA 5 cut(s) 246, 588, 611, 792, 1085
SatI GCNGC 3 cut(s) 33, 473, 476
Sau3AI GATC 7 cut(s) 7, 111, 139, 418, 661, 1038, 1113
Sau96I GGNCC 2 cut(s) 1000, 1099
SchI GAGTC 2 cut(s) 1076, 1116
ScrFI CCNGG 2 cut(s) 192, 193
SduI GDGCHC 1 cut(s) 969
SfaNI GCATC 1 cut(s) 912
SgsI GGCGCGCC 1 cut(s) 468
SinI GGWCC 2 cut(s) 1000, 1099
SmaI CCCGGG 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 974
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 3 cut(s) 408, 657, 849
SsiI CCGC 4 cut(s) 32, 424, 473, 719
SspMI CTAG 3 cut(s) 75, 860, 1122
SstI GAGCTC 1 cut(s) 969
StyD4I CCNGG 2 cut(s) 190, 191
StyI CCWWGG 2 cut(s) 388, 1102
TaaI ACNGT 7 cut(s) 106, 496, 503, 622, 751, 777, 1004
TaiI ACGT 3 cut(s) 408, 547, 1121
TaqI TCGA 5 cut(s) 417, 744, 840, 1041, 1112
TaqII GACCGA 1 cut(s) 273
TasI AATT 3 cut(s) 408, 657, 849
TatI WGTACW 1 cut(s) 498
TauI GCSGC 2 cut(s) 35, 475
TfiI GAWTC 9 cut(s) 44, 168, 302, 461, 489, 533, 677, 698, 1125
Tru1I TTAA 5 cut(s) 246, 588, 611, 792, 1085
Tru9I TTAA 5 cut(s) 246, 588, 611, 792, 1085
TscAI CASTG 2 cut(s) 111, 499
TseFI GTSAC 2 cut(s) 131, 235
TseI GCWGC 1 cut(s) 475
Tsp45I GTSAC 2 cut(s) 131, 235
TspDTI ATGAA 8 cut(s) 56, 134, 213, 276, 524, 725, 727, 920
TspGWI ACGGA 3 cut(s) 387, 710, 1103
TspMI CCCGGG 1 cut(s) 191
TspRI CASTG 2 cut(s) 111, 499
Tth111I GACNNNGTC 1 cut(s) 573
VpaK11BI GGWCC 2 cut(s) 1000, 1099
XbaI TCTAGA 2 cut(s) 74, 1121
XceI RCATGY 1 cut(s) 767
XmaI CCCGGG 1 cut(s) 191
XspI CTAG 3 cut(s) 75, 860, 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.