Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001501.1

Orthogroup ID

OG0004559

Physical Location & Seq

Genomic Coordinates Reverse (-)

282077 .. 283279

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001501.1_g000065.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggttggtgttgtgaccaaaactgggaaaagcgtgacaaaattcaaagaaggtgatcgtgtaggagttggggttattgtgggatcctgcaacacatgtgagacttgccagcaggacttggagaactattgccccaaagtgatattcacatataactcccacaatcatgacaaaactaaaacttatggtggttattctgatatgattgttgttgaccatcgctttgtgctccgctttcctgataacttaccccccgattctggtgctccacttctatgtgctgggatcactgtgtatagtccaatgaagtactacggcatgacagagcctggaaagcatttgggcgtggcaggacttggtggactaggtcatattgctgtcaaaattggtaaggcatttggtttgaaggtaactgtcatcagtacttccccagctaaggaggatgaggctattaagagacttggggctgattcttttgttgtttcaactgaccctgcacaagtgaaggcagcgatgggtaccatggattacataattgacacagtagctgcagttcatgcccttgctccattaattggtctacttaagctgaatgggaagctggttactgtgggtttgcctaataagccactggagttgcctatatttccattggttctggggaggaagctcgttggtggaagcgacattggagggataaaagagacgcaggagatgcttgacttttgtgccaaacacaatattacctccgaaatcaagctaattaaaatggactacattaacacagctatggagcgacttgccaaatcagatgtcaggtatcggtttgtgatcgatgtggggaactccttgtctcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009735 GO:0009808 GO:0009809 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0045551 GO:0048046 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

286

Amino Acids

30.76

Weight (kDa)

8.6

Isoelectric Point (pI)

20.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21730 AT2G21890 AT4G39330 AT4G39330
fragaria_vesca	FvH4_1g23790 FvH4_1g23790 FvH4_1g23810
malus_domestica	MD07G1183600.v1.1 MD13G1280800.v1.1
prunus_persica	Prupe.6G161800_v2.0.a1 Prupe.6G162000_v2.0.a1 Prupe.6G162000_v2.0.a1
pyrus_communis	pycom15g30090
rosa_chinensis	RchiOBHm_Chr2g0119681 RchiOBHm_Chr2g0119731
rosa_laevigata	RLG00000018484 RLG00000018488
rosa_multiflora	Rmu_sc0001501.1_g000063 Rmu_sc0001501.1_g000064 Rmu_sc0001501.1_g000065 Rmu_sc0001501.1_g000091 Rmu_sc0018654.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124130 Rroxscaffold_2G00124200
rosa_rugosa	Rorug02G0222900 Rorug02G0223200
rosa_samantha	Rh2BG292100 Rh2BG292400
rosa_wichuraiana	Rw0G003780 Rw2G022420 Rw2G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	518
AccB1I	GGYRCC	1 cut(s)	518
AccB7I	CCANNNNNTGG	1 cut(s)	575
AccI	GTMKAC	1 cut(s)	580
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	3 cut(s)	78, 91, 293
AcsI	RAATTY	1 cut(s)	41
AfaI	GTAC	3 cut(s)	311, 424, 520
AfiI	CCNNNNNNNGG	4 cut(s)	24, 260, 436, 575
AflII	CTTAAG	1 cut(s)	584
AflIII	ACRYGT	1 cut(s)	95
AgsI	TTSAA	3 cut(s)	46, 406, 486
AjnI	CCWGG	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AluBI	AGCT	7 cut(s)	434, 548, 589, 601, 670, 760, 788
AluI	AGCT	7 cut(s)	434, 548, 589, 601, 670, 760, 788
Alw21I	GWGCWC	2 cut(s)	231, 268
Alw26I	GTCTC	3 cut(s)	95, 451, 698
AlwI	GGATC	3 cut(s)	78, 91, 293
AlwNI	CAGNNNCTG	2 cut(s)	329, 548
ApeKI	GCWGC	2 cut(s)	509, 548
ApoI	RAATTY	1 cut(s)	41
ArsI	GACNNNNNNTTYG	4 cut(s)	206, 238, 798, 830
AseI	ATTAAT	1 cut(s)	572
Asp718I	GGTACC	1 cut(s)	518
AsuHPI	GGTGA	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	518
Bbv12I	GWGCWC	2 cut(s)	231, 268
BbvI	GCAGC	2 cut(s)	521, 535
BccI	CCATC	2 cut(s)	225, 508
BceAI	ACGGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	3 cut(s)	95, 451, 698
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	549
BfrI	CTTAAG	1 cut(s)	584
BisI	GCNGC	2 cut(s)	510, 549
BlsI	GCNGC	2 cut(s)	511, 550
BmcAI	AGTACT	2 cut(s)	311, 424
Bme1390I	CCNGG	1 cut(s)	330
BmiI	GGNNCC	2 cut(s)	85, 520
BmrFI	CCNGG	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	705
BmuI	ACTGGG	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	653
Bpu10I	CCTNAGC	1 cut(s)	435
Bsa29I	ATCGAT	1 cut(s)	834
BsaJI	CCNNGG	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 260, 436, 575
Bse1I	ACTGG	2 cut(s)	28, 636
BseBI	CCWGG	1 cut(s)	330
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	1 cut(s)	448
BseLI	CCNNNNNNNGG	4 cut(s)	24, 260, 436, 575
BseNI	ACTGG	2 cut(s)	28, 636
BseXI	GCAGC	2 cut(s)	521, 535
BseYI	CCCAGC	2 cut(s)	281, 430
BsgI	GTGCAG	1 cut(s)	480
BshNI	GGYRCC	1 cut(s)	518
BshVI	ATCGAT	1 cut(s)	834
BsiHKAI	GWGCWC	2 cut(s)	231, 268
BslI	CCNNNNNNNGG	4 cut(s)	24, 260, 436, 575
BsmAI	GTCTC	3 cut(s)	95, 451, 698
BsmBI	CGTCTC	1 cut(s)	698
Bsp1286I	GDGCHC	2 cut(s)	231, 268
Bsp143I	GATC	4 cut(s)	55, 83, 285, 831
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	1 cut(s)	232
BspDI	ATCGAT	1 cut(s)	834
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	85, 520
BspMAI	CTGCAG	1 cut(s)	553
BspPI	GGATC	3 cut(s)	78, 91, 293
BspT107I	GGYRCC	1 cut(s)	518
BspTI	CTTAAG	1 cut(s)	584
BsrI	ACTGG	2 cut(s)	28, 636
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	4 cut(s)	55, 83, 285, 831
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	4 cut(s)	292, 415, 544, 610
BstAFI	CTTAAG	1 cut(s)	584
BstAPI	GCANNNNNTGC	2 cut(s)	557, 715
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	435, 855
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	1 cut(s)	448
BstKTI	GATC	4 cut(s)	58, 86, 288, 834
BstMAI	GTCTC	3 cut(s)	95, 451, 698
BstMBI	GATC	4 cut(s)	55, 83, 285, 831
BstMWI	GCNNNNNNNGC	4 cut(s)	334, 557, 625, 715
BstNI	CCWGG	1 cut(s)	330
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	549
BstV1I	GCAGC	2 cut(s)	521, 535
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
Bsu15I	ATCGAT	1 cut(s)	834
BsuTUI	ATCGAT	1 cut(s)	834
BtgI	CCRYGG	1 cut(s)	522
BtgZI	GCGATG	2 cut(s)	203, 527
BtsCI	GGATG	1 cut(s)	448
BtsIMutI	CAGTG	2 cut(s)	288, 629
Cac8I	GCNNGC	1 cut(s)	110
CaiI	CAGNNNCTG	2 cut(s)	329, 548
CciI	TCATGA	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	834
CseI	GACGC	1 cut(s)	715
Csp6I	GTAC	3 cut(s)	310, 423, 519
CspCI	CAANNNNNGTGG	2 cut(s)	618, 653
CviAII	CATG	5 cut(s)	96, 167, 319, 523, 557
CviQI	GTAC	3 cut(s)	310, 423, 519
DdeI	CTNAG	2 cut(s)	435, 855
DpnI	GATC	4 cut(s)	57, 85, 287, 833
DpnII	GATC	4 cut(s)	55, 83, 285, 831
Eco130I	CCWWGG	1 cut(s)	522
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
Esp3I	CGTCTC	1 cut(s)	698
FaeI	CATG	5 cut(s)	99, 170, 322, 526, 560
FatI	CATG	5 cut(s)	95, 166, 318, 522, 556
FblI	GTMKAC	1 cut(s)	580
Fnu4HI	GCNGC	2 cut(s)	510, 549
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	2 cut(s)	510, 549
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	2 cut(s)	510, 549
GsaI	CCCAGC	2 cut(s)	285, 434
GsuI	CTGGAG	1 cut(s)	653
HgaI	GACGC	1 cut(s)	715
Hin1II	CATG	5 cut(s)	99, 170, 322, 526, 560
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	257, 470
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	3 cut(s)	214, 362, 581
Hpy188I	TCNGA	3 cut(s)	199, 751, 811
Hpy188III	TCNNGA	2 cut(s)	167, 239
Hpy8I	GTNNAC	3 cut(s)	214, 362, 581
HpyAV	CCTTC	3 cut(s)	44, 400, 499
HpyCH4III	ACNGT	4 cut(s)	292, 415, 544, 610
HpyCH4V	TGCA	3 cut(s)	90, 497, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	334, 557, 625, 715
HpyF3I	CTNAG	2 cut(s)	435, 855
Hsp92II	CATG	5 cut(s)	99, 170, 322, 526, 560
KpnI	GGTACC	1 cut(s)	522
Kzo9I	GATC	4 cut(s)	55, 83, 285, 831
LmnI	GCTCC	4 cut(s)	234, 271, 571, 793
Lsp1109I	GCAGC	2 cut(s)	521, 535
LweI	GCATC	1 cut(s)	705
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	4 cut(s)	13, 34, 409, 604
MalI	GATC	4 cut(s)	57, 85, 287, 833
MboI	GATC	4 cut(s)	55, 83, 285, 831
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	231, 268
MluCI	AATT	5 cut(s)	41, 384, 534, 573, 762
MnlI	CCTC	5 cut(s)	433, 439, 657, 686, 757
MseI	TTAA	5 cut(s)	453, 572, 585, 765, 780
MslI	CAYNNNNRTG	3 cut(s)	165, 274, 788
MspCI	CTTAAG	1 cut(s)	584
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	4 cut(s)	334, 557, 625, 715
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	4 cut(s)	55, 83, 285, 831
NlaIII	CATG	5 cut(s)	99, 170, 322, 526, 560
NlaIV	GGNNCC	2 cut(s)	85, 520
NmuCI	GTSAC	2 cut(s)	13, 34
NspI	RCATGY	1 cut(s)	99
PagI	TCATGA	1 cut(s)	166
PciI	ACATGT	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	257, 470
PflFI	GACNNNGTC	1 cut(s)	366
PflMI	CCANNNNNTGG	1 cut(s)	575
PkrI	GCNGC	2 cut(s)	511, 550
PscI	ACATGT	1 cut(s)	95
PshBI	ATTAAT	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	328
PspFI	CCCAGC	2 cut(s)	281, 430
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	85, 520
PsrI	GAACNNNNNNTAC	2 cut(s)	537, 569
PstI	CTGCAG	1 cut(s)	553
PstNI	CAGNNNCTG	2 cut(s)	329, 548
PsuI	RGATCY	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	366
RsaI	GTAC	3 cut(s)	311, 424, 520
RsaNI	GTAC	3 cut(s)	310, 423, 519
RseI	CAYNNNNRTG	3 cut(s)	165, 274, 788
SaqAI	TTAA	5 cut(s)	453, 572, 585, 765, 780
SatI	GCNGC	2 cut(s)	510, 549
Sau3AI	GATC	4 cut(s)	55, 83, 285, 831
ScaI	AGTACT	2 cut(s)	311, 424
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	2 cut(s)	231, 268
SfaNI	GCATC	1 cut(s)	705
SfcI	CTRYAG	1 cut(s)	549
SmiMI	CAYNNNNRTG	3 cut(s)	165, 274, 788
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	5 cut(s)	41, 384, 534, 573, 762
SsiI	CCGC	1 cut(s)	232
SspI	AATATT	1 cut(s)	742
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	4 cut(s)	292, 415, 544, 610
TaqI	TCGA	1 cut(s)	834
TasI	AATT	5 cut(s)	41, 384, 534, 573, 762
TatI	WGTACW	2 cut(s)	309, 422
TfiI	GAWTC	2 cut(s)	257, 470
Tru1I	TTAA	5 cut(s)	453, 572, 585, 765, 780
Tru9I	TTAA	5 cut(s)	453, 572, 585, 765, 780
TscAI	CASTG	2 cut(s)	295, 636
TseFI	GTSAC	2 cut(s)	13, 34
TseI	GCWGC	2 cut(s)	509, 548
Tsp45I	GTSAC	2 cut(s)	13, 34
TspDTI	ATGAA	2 cut(s)	320, 545
TspRI	CASTG	2 cut(s)	295, 636
Tth111I	GACNNNGTC	1 cut(s)	366
Van91I	CCANNNNNTGG	1 cut(s)	575
Vha464I	CTTAAG	1 cut(s)	584
VspI	ATTAAT	1 cut(s)	572
XapI	RAATTY	1 cut(s)	41
XceI	RCATGY	1 cut(s)	99
XmiI	GTMKAC	1 cut(s)	580
XspI	CTAG	1 cut(s)	365
ZrmI	AGTACT	2 cut(s)	311, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.