Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004559

Physical Location & Seq

Genomic Coordinates Reverse (-)

21593644 .. 21594219

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0222900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCAAACTGTATCAAATTGCATGTGTCTGAAGAAATCGTGGAGCAAATCCTATCAAGACTACCTCCTAAATCCTTGATGCGATTTAAATGCGTCTGTACCTTGTGGTGCAATCTTATCAAAAGCCCTAGTTTCGTAGCCAAACACCTCTCCAATTCTTTGCGCGCATCCTCATCCTCATCCGTTTCCATTCTTTTCAAGCATACTGTTGAGAAGAAAGTTGAGAACAATGACCATGCGGAAACTGGTGACGATGTGGAAACTCTACTGTCATCACTTTATCTCTGCAATGAGATTGACGATGAGCAAATGTTTGTATATGGGGATGTTGGGAGATGCATCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009735 GO:0009808 GO:0009809 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0045551 GO:0048046 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

115

Amino Acids

12.97

Weight (kDa)

5.91

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	10 - 45	1.9e-10	F-box domain
F-box-like	PF12937	11 - 45	1.9e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21730 AT2G21890 AT4G39330 AT4G39330
fragaria_vesca	FvH4_1g23790 FvH4_1g23790 FvH4_1g23810
malus_domestica	MD07G1183600.v1.1 MD13G1280800.v1.1
prunus_persica	Prupe.6G161800_v2.0.a1 Prupe.6G162000_v2.0.a1 Prupe.6G162000_v2.0.a1
pyrus_communis	pycom15g30090
rosa_chinensis	RchiOBHm_Chr2g0119681 RchiOBHm_Chr2g0119731
rosa_laevigata	RLG00000018484 RLG00000018488
rosa_multiflora	Rmu_sc0001501.1_g000063 Rmu_sc0001501.1_g000064 Rmu_sc0001501.1_g000065 Rmu_sc0001501.1_g000091 Rmu_sc0018654.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124130 Rroxscaffold_2G00124200
rosa_rugosa	Rorug02G0222900 Rorug02G0223200
rosa_samantha	Rh2BG292100 Rh2BG292400
rosa_wichuraiana	Rw0G003780 Rw2G022420 Rw2G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	165
AciI	CCGC	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	199
AspLEI	GCGC	2 cut(s)	165, 167
AsuHPI	GGTGA	1 cut(s)	260
BcgI	CGANNNNNNTGC	2 cut(s)	72, 106
BfaI	CTAG	1 cut(s)	129
BmsI	GCATC	3 cut(s)	69, 176, 326
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	295
BseGI	GGATG	5 cut(s)	167, 173, 179, 331, 339
BseMI	GCAATG	1 cut(s)	295
BseNI	ACTGG	1 cut(s)	250
BsePI	GCGCGC	1 cut(s)	163
Bsh1236I	CGCG	1 cut(s)	165
BspACI	CCGC	1 cut(s)	239
BspFNI	CGCG	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	250
BssHII	GCGCGC	1 cut(s)	163
Bst4CI	ACNGT	3 cut(s)	11, 208, 270
BstC8I	GCNNGC	1 cut(s)	165
BstF5I	GGATG	5 cut(s)	167, 173, 179, 331, 339
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	165, 167
BstNSI	RCATGY	1 cut(s)	26
BstUI	CGCG	1 cut(s)	165
BtsCI	GGATG	5 cut(s)	167, 173, 179, 331, 339
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	2 cut(s)	165, 167
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	2 cut(s)	23, 236
CviJI	RGCY	2 cut(s)	126, 140
CviKI_1	RGCY	2 cut(s)	126, 140
CviQI	GTAC	1 cut(s)	99
DraI	TTTAAA	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	341
FaeI	CATG	2 cut(s)	26, 239
FaiI	YATR	5 cut(s)	24, 204, 237, 319, 321
FatI	CATG	2 cut(s)	22, 235
FokI	GGATG	5 cut(s)	154, 160, 166, 326, 338
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	2 cut(s)	164, 166
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	2 cut(s)	165, 167
Hin1II	CATG	2 cut(s)	26, 239
Hin6I	GCGC	2 cut(s)	163, 165
HinP1I	GCGC	2 cut(s)	163, 165
HphI	GGTGA	1 cut(s)	260
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	57
HpyCH4III	ACNGT	3 cut(s)	11, 208, 270
HpyCH4V	TGCA	4 cut(s)	22, 111, 288, 339
Hsp92II	CATG	2 cut(s)	26, 239
HspAI	GCGC	2 cut(s)	163, 165
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	1 cut(s)	231
LweI	GCATC	3 cut(s)	69, 176, 326
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	248
MboII	GAAGA	2 cut(s)	44, 226
MluCI	AATT	2 cut(s)	17, 154
MnlI	CCTC	4 cut(s)	75, 158, 181, 187
Mph1103I	ATGCAT	1 cut(s)	341
MseI	TTAA	1 cut(s)	87
MvnI	CGCG	1 cut(s)	165
NlaIII	CATG	2 cut(s)	26, 239
NmuCI	GTSAC	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	341
NspI	RCATGY	1 cut(s)	26
PauI	GCGCGC	1 cut(s)	163
PteI	GCGCGC	1 cut(s)	163
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	87
SetI	ASST	3 cut(s)	67, 104, 150
SfaNI	GCATC	3 cut(s)	69, 176, 326
SmiI	ATTTAAAT	1 cut(s)	88
Sse9I	AATT	2 cut(s)	17, 154
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	129
SwaI	ATTTAAAT	1 cut(s)	88
TaaI	ACNGT	3 cut(s)	11, 208, 270
TasI	AATT	2 cut(s)	17, 154
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	248
TspGWI	ACGGA	1 cut(s)	172
XceI	RCATGY	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.