Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004559

Physical Location & Seq

Genomic Coordinates Reverse (-)

58236815 .. 58240494

Gene Structure 3680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCAAAATCACCAAAAGAAGAACACCCTCAGAAGGTTTTTGGTTGGGCTGCCAGAGACTCTTCTGGGTCGCTTTCCCCCTTTCATTTTTCTAGAAGGGAAAATGCTGATGGTGATGTAACAATAAAAGTCCTCTATTGTGGGGTTTGCCATTCAGACTTGCATTTTGTCAAGAACGATTGGGGGATCACCAACTATCCTATCGTACCTGGGCATGAAATGGTTGGTGTTGTGACCAAAACTGGGAAAAGCGTGACAAAATTCAAAGAAGGTGATCGTGTAGGAGTTGGGGTTATTGTGGGATCCTGCAACACATGTGAGACTTGCCAGCAGGAATTGGAGAACTATTGCCCCAAAGTGATATTCACATATAACTCCCACAATCATGACAAAACTAAAACTTATGGTGGTTATTCTGATATGATTGTTGTTGACCATCGCTTTGTGCTCCGCTTTCCTGATAACTTACCCCCGATTCTGGTAACTGTCATCAGTACTTCCCCAGCTAAGGAGGATGAGGCTATTAACAGACTTGGGGCTGATTCTTTTGTTGTTTCAACTGACCCTGCACAAGTGAAGGCAGCGATGGGTACCATGGATTACATAATTGACACAGTAGCTGCAGTTCATGCCCTTGCTCCATTAATTGGTCTACTTAAGCTGAATGGGAAGCTGGTTACTGTGGGTTTGCCTAATAAGCCACTGGAGTTGCCTATATTTCCATTGGTTCTGGGGAGGAAGCTCGTTGGTGGAAGCGACATTGGAGGGATAAAAGAGACGCAGGAGATGCTGGACTTTTGTGCCAAACACAATATTACCTCCGAAATCGAGCTAATTAAAATGGACTACATTAACACAGCTATGGAGCGACTTGCCAAATCAGATGTCAGGTATCGGTTTGTGATCGATGTGGGGAACTCCTTGTCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009735 GO:0009808 GO:0009809 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0045551 GO:0048046 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

310

Amino Acids

34.04

Weight (kDa)

6.36

Isoelectric Point (pI)

26.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	37 - 154	2.1e-28	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	161 - 268	5.8e-14	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21730 AT2G21890 AT4G39330 AT4G39330
fragaria_vesca	FvH4_1g23790 FvH4_1g23790 FvH4_1g23810
malus_domestica	MD07G1183600.v1.1 MD13G1280800.v1.1
prunus_persica	Prupe.6G161800_v2.0.a1 Prupe.6G162000_v2.0.a1 Prupe.6G162000_v2.0.a1
pyrus_communis	pycom15g30090
rosa_chinensis	RchiOBHm_Chr2g0119681 RchiOBHm_Chr2g0119731
rosa_laevigata	RLG00000018484 RLG00000018488
rosa_multiflora	Rmu_sc0001501.1_g000063 Rmu_sc0001501.1_g000064 Rmu_sc0001501.1_g000065 Rmu_sc0001501.1_g000091 Rmu_sc0018654.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124130 Rroxscaffold_2G00124200
rosa_rugosa	Rorug02G0222900 Rorug02G0223200
rosa_samantha	Rh2BG292100 Rh2BG292400
rosa_wichuraiana	Rw0G003780 Rw2G022420 Rw2G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	590
AccB1I	GGYRCC	1 cut(s)	590
AccB7I	CCANNNNNTGG	1 cut(s)	647
AccI	GTMKAC	1 cut(s)	652
AciI	CCGC	1 cut(s)	451
AclWI	GGATC	3 cut(s)	194, 297, 310
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	3 cut(s)	207, 496, 592
AfiI	CCNNNNNNNGG	5 cut(s)	34, 243, 478, 508, 647
AflII	CTTAAG	1 cut(s)	656
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	265, 558
AjnI	CCWGG	1 cut(s)	208
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	7 cut(s)	506, 620, 661, 673, 742, 832, 860
AluI	AGCT	7 cut(s)	506, 620, 661, 673, 742, 832, 860
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	3 cut(s)	51, 314, 770
AlwI	GGATC	3 cut(s)	194, 297, 310
AlwNI	CAGNNNCTG	1 cut(s)	620
ApeKI	GCWGC	3 cut(s)	50, 581, 620
ApoI	RAATTY	1 cut(s)	260
ArsI	GACNNNNNNTTYG	6 cut(s)	149, 181, 425, 457, 870, 902
AseI	ATTAAT	1 cut(s)	644
Asp718I	GGTACC	1 cut(s)	590
AsuHPI	GGTGA	4 cut(s)	3, 125, 181, 284
BamHI	GGATCC	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	37, 593, 607
BccI	CCATC	3 cut(s)	104, 444, 580
BciT130I	CCWGG	1 cut(s)	210
BcoDI	GTCTC	3 cut(s)	51, 314, 770
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	621
BfrI	CTTAAG	1 cut(s)	656
BisI	GCNGC	3 cut(s)	51, 582, 621
BlsI	GCNGC	3 cut(s)	52, 583, 622
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	304, 592
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	777
BmuI	ACTGGG	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	725
Bpu10I	CCTNAGC	1 cut(s)	507
Bsa29I	ATCGAT	1 cut(s)	906
BsaJI	CCNNGG	2 cut(s)	209, 594
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 243, 478, 508, 647
Bse1I	ACTGG	2 cut(s)	247, 708
BseBI	CCWGG	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	906
BseDI	CCNNGG	2 cut(s)	209, 594
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	5 cut(s)	34, 243, 478, 508, 647
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	247, 708
BseXI	GCAGC	3 cut(s)	37, 593, 607
BseYI	CCCAGC	1 cut(s)	502
BsgI	GTGCAG	1 cut(s)	552
BshNI	GGYRCC	1 cut(s)	590
BshVI	ATCGAT	1 cut(s)	906
BsiHKAI	GWGCWC	1 cut(s)	450
BslI	CCNNNNNNNGG	5 cut(s)	34, 243, 478, 508, 647
BsmAI	GTCTC	3 cut(s)	51, 314, 770
BsmBI	CGTCTC	1 cut(s)	770
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	4 cut(s)	186, 274, 302, 903
Bsp19I	CCATGG	1 cut(s)	594
BspACI	CCGC	1 cut(s)	451
BspCNI	CTCAG	1 cut(s)	43
BspDI	ATCGAT	1 cut(s)	906
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	304, 592
BspMAI	CTGCAG	1 cut(s)	625
BspPI	GGATC	3 cut(s)	194, 297, 310
BspT107I	GGYRCC	1 cut(s)	590
BspTI	CTTAAG	1 cut(s)	656
BsrI	ACTGG	2 cut(s)	247, 708
BssECI	CCNNGG	2 cut(s)	209, 594
BssMI	GATC	4 cut(s)	186, 274, 302, 903
BssT1I	CCWWGG	1 cut(s)	594
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	3 cut(s)	487, 616, 682
Bst6I	CTCTTC	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	656
BstAPI	GCANNNNNTGC	2 cut(s)	629, 787
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	3 cut(s)	30, 507, 927
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	1 cut(s)	520
BstKTI	GATC	4 cut(s)	189, 277, 305, 906
BstMAI	GTCTC	3 cut(s)	51, 314, 770
BstMBI	GATC	4 cut(s)	186, 274, 302, 903
BstMWI	GCNNNNNNNGC	3 cut(s)	629, 697, 787
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	621
BstV1I	GCAGC	3 cut(s)	37, 593, 607
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
Bsu15I	ATCGAT	1 cut(s)	906
BsuTUI	ATCGAT	1 cut(s)	906
BtgI	CCRYGG	1 cut(s)	594
BtgZI	GCGATG	2 cut(s)	422, 599
BtsCI	GGATG	1 cut(s)	520
BtsIMutI	CAGTG	1 cut(s)	701
Cac8I	GCNNGC	1 cut(s)	329
CaiI	CAGNNNCTG	1 cut(s)	620
CciI	TCATGA	1 cut(s)	385
ClaI	ATCGAT	1 cut(s)	906
CseI	GACGC	1 cut(s)	787
Csp6I	GTAC	3 cut(s)	206, 495, 591
CspCI	CAANNNNNGTGG	2 cut(s)	690, 725
CviAII	CATG	5 cut(s)	215, 315, 386, 595, 629
CviQI	GTAC	3 cut(s)	206, 495, 591
DdeI	CTNAG	3 cut(s)	30, 507, 927
DpnI	GATC	4 cut(s)	188, 276, 304, 905
DpnII	GATC	4 cut(s)	186, 274, 302, 903
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	594
Esp3I	CGTCTC	1 cut(s)	770
FaeI	CATG	5 cut(s)	218, 318, 389, 598, 632
FatI	CATG	5 cut(s)	214, 314, 385, 594, 628
FblI	GTMKAC	1 cut(s)	652
Fnu4HI	GCNGC	3 cut(s)	51, 582, 621
FokI	GGATG	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	51, 582, 621
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	3 cut(s)	51, 582, 621
GsaI	CCCAGC	1 cut(s)	506
GsuI	CTGGAG	1 cut(s)	725
HgaI	GACGC	1 cut(s)	787
Hin1II	CATG	5 cut(s)	218, 318, 389, 598, 632
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	3 cut(s)	59, 475, 542
HphI	GGTGA	4 cut(s)	3, 125, 181, 284
Hpy166II	GTNNAC	2 cut(s)	433, 653
Hpy188I	TCNGA	5 cut(s)	33, 157, 418, 823, 883
Hpy188III	TCNNGA	4 cut(s)	93, 172, 386, 458
Hpy8I	GTNNAC	2 cut(s)	433, 653
HpyAV	CCTTC	4 cut(s)	28, 90, 263, 571
HpyCH4III	ACNGT	3 cut(s)	487, 616, 682
HpyCH4V	TGCA	4 cut(s)	163, 309, 569, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	629, 697, 787
HpyF3I	CTNAG	3 cut(s)	30, 507, 927
Hsp92II	CATG	5 cut(s)	218, 318, 389, 598, 632
KpnI	GGTACC	1 cut(s)	594
Kzo9I	GATC	4 cut(s)	186, 274, 302, 903
LmnI	GCTCC	3 cut(s)	453, 643, 865
Lsp1109I	GCAGC	3 cut(s)	37, 593, 607
LweI	GCATC	1 cut(s)	777
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	5 cut(s)	118, 232, 253, 481, 676
MalI	GATC	4 cut(s)	188, 276, 304, 905
MboI	GATC	4 cut(s)	186, 274, 302, 903
MboII	GAAGA	2 cut(s)	32, 54
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	5 cut(s)	260, 335, 606, 645, 834
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	7 cut(s)	39, 143, 505, 511, 729, 758, 829
MseI	TTAA	5 cut(s)	525, 644, 657, 837, 852
MslI	CAYNNNNRTG	2 cut(s)	384, 860
MspCI	CTTAAG	1 cut(s)	656
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	629, 697, 787
NcoI	CCATGG	1 cut(s)	594
NdeII	GATC	4 cut(s)	186, 274, 302, 903
NlaIII	CATG	5 cut(s)	218, 318, 389, 598, 632
NlaIV	GGNNCC	2 cut(s)	304, 592
NmuCI	GTSAC	2 cut(s)	232, 253
NspI	RCATGY	1 cut(s)	318
PagI	TCATGA	1 cut(s)	385
PciI	ACATGT	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	475, 542
PflMI	CCANNNNNTGG	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	52, 583, 622
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PscI	ACATGT	1 cut(s)	314
PshBI	ATTAAT	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	304, 592
PsrI	GAACNNNNNNTAC	2 cut(s)	609, 641
PstI	CTGCAG	1 cut(s)	625
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	3 cut(s)	207, 496, 592
RsaNI	GTAC	3 cut(s)	206, 495, 591
RseI	CAYNNNNRTG	2 cut(s)	384, 860
SaqAI	TTAA	5 cut(s)	525, 644, 657, 837, 852
SatI	GCNGC	3 cut(s)	51, 582, 621
Sau3AI	GATC	4 cut(s)	186, 274, 302, 903
ScaI	AGTACT	1 cut(s)	496
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	1 cut(s)	777
SfcI	CTRYAG	1 cut(s)	621
SmiMI	CAYNNNNRTG	2 cut(s)	384, 860
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
Sse9I	AATT	5 cut(s)	260, 335, 606, 645, 834
SsiI	CCGC	1 cut(s)	451
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	3 cut(s)	487, 616, 682
TaqI	TCGA	2 cut(s)	828, 906
TasI	AATT	5 cut(s)	260, 335, 606, 645, 834
TatI	WGTACW	1 cut(s)	494
TfiI	GAWTC	2 cut(s)	475, 542
Tru1I	TTAA	5 cut(s)	525, 644, 657, 837, 852
Tru9I	TTAA	5 cut(s)	525, 644, 657, 837, 852
TscAI	CASTG	1 cut(s)	708
TseFI	GTSAC	2 cut(s)	232, 253
TseI	GCWGC	3 cut(s)	50, 581, 620
Tsp45I	GTSAC	2 cut(s)	232, 253
TspDTI	ATGAA	3 cut(s)	74, 231, 617
TspRI	CASTG	1 cut(s)	708
Van91I	CCANNNNNTGG	1 cut(s)	647
Vha464I	CTTAAG	1 cut(s)	656
VspI	ATTAAT	1 cut(s)	644
XapI	RAATTY	1 cut(s)	260
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	1 cut(s)	318
XmiI	GTMKAC	1 cut(s)	652
XspI	CTAG	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.