Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018654.1

Orthogroup ID

OG0004559

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2582

Gene Structure 2582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018654.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 982 bp

ggaaaatgctgatggtgatgtaacaataaaagtcctgtattgtggggtttgccattcagacctgcattctgtcaagaacgattgggggttcaccaactatcctattgtacctgggcatgaaattgttggtgttgtgaccaaaactgggaaaagtgtgacgaaattcaaagaaggtgatcgtgtaggagttggtgttatggtgggatcctgcaacacatgtgagacttgccagcaggacctggagaactattgcccgaaagtgatattcacctataactccctcaatcatgacaaaactaagacttatggtggttattctgatatgattgttgttgaccatcgctttgtgctccgctttcccgataacttacccccagattctggcgctccacttctatgtgccgggatcactgtgtatagtccaatgaagtattacggcatgacagagcctggaaagcatttgggcgtggcaggactaggtggactaggtcatattgctgtcaaaattggtaaggcttttggtttgaaggtaactgtcatcagtacttccccagctaaggaggatgaggctattaacagacttggggctgattcttttgttgtttcaactgacccggcacaattgaaggcagcgatgggtaccatggattacataattgacacagtatctgcagttcatgcccttgctccattaattggtctacttaagctgaatgggaagctggttactgtgggtttgcctaataagccactggagttgcctatatttccattggttctggggaggaagctcgttggtggaagcgacgttggagggataaaagagacgcaggagatgcttgacttttgtgccaaacacaatattacctccgaaatcgagctaattaaaatggactacattaacacagctatggagcgacttgccaaatcagatgtcaggtatcggtttgtgatcgatgtgggcaactcctcgtctcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009735 GO:0009808 GO:0009809 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0045551 GO:0048046 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

326

Amino Acids

35.13

Weight (kDa)

6.33

Isoelectric Point (pI)

21.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21730 AT2G21890 AT4G39330 AT4G39330
fragaria_vesca	FvH4_1g23790 FvH4_1g23790 FvH4_1g23810
malus_domestica	MD07G1183600.v1.1 MD13G1280800.v1.1
prunus_persica	Prupe.6G161800_v2.0.a1 Prupe.6G162000_v2.0.a1 Prupe.6G162000_v2.0.a1
pyrus_communis	pycom15g30090
rosa_chinensis	RchiOBHm_Chr2g0119681 RchiOBHm_Chr2g0119731
rosa_laevigata	RLG00000018484 RLG00000018488
rosa_multiflora	Rmu_sc0001501.1_g000063 Rmu_sc0001501.1_g000064 Rmu_sc0001501.1_g000065 Rmu_sc0001501.1_g000091 Rmu_sc0018654.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124130 Rroxscaffold_2G00124200
rosa_rugosa	Rorug02G0222900 Rorug02G0223200
rosa_samantha	Rh2BG292100 Rh2BG292400
rosa_wichuraiana	Rw0G003780 Rw2G022420 Rw2G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
Acc65I	GGTACC	1 cut(s)	639
AccB1I	GGYRCC	1 cut(s)	639
AccB7I	CCANNNNNTGG	2 cut(s)	381, 696
AccI	GTMKAC	1 cut(s)	701
AciI	CCGC	1 cut(s)	353
AclWI	GGATC	3 cut(s)	199, 212, 414
AcsI	RAATTY	1 cut(s)	162
AfaI	GTAC	3 cut(s)	109, 545, 641
AfiI	CCNNNNNNNGG	4 cut(s)	145, 381, 557, 696
AflII	CTTAAG	1 cut(s)	705
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	4 cut(s)	167, 527, 607, 626
AjnI	CCWGG	3 cut(s)	110, 238, 449
AluBI	AGCT	6 cut(s)	555, 710, 722, 791, 881, 909
AluI	AGCT	6 cut(s)	555, 710, 722, 791, 881, 909
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	2 cut(s)	216, 819
AlwI	GGATC	3 cut(s)	199, 212, 414
AlwNI	CAGNNNCTG	4 cut(s)	239, 381, 450, 669
ApeKI	GCWGC	1 cut(s)	630
ApoI	RAATTY	1 cut(s)	162
ArsI	GACNNNNNNTTYG	4 cut(s)	327, 359, 919, 951
AseI	ATTAAT	1 cut(s)	693
Asp718I	GGTACC	1 cut(s)	639
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	2 cut(s)	404, 615
AsuHPI	GGTGA	4 cut(s)	27, 83, 186, 260
AvaII	GGWCC	1 cut(s)	236
BamHI	GGATCC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	642
BccI	CCATC	3 cut(s)	6, 346, 629
BceAI	ACGGC	1 cut(s)	452
BciT130I	CCWGG	3 cut(s)	112, 240, 451
BcnI	CCSGG	2 cut(s)	404, 615
BcoDI	GTCTC	2 cut(s)	216, 819
BfaI	CTAG	2 cut(s)	477, 486
BfmI	CTRYAG	1 cut(s)	670
BfoI	RGCGCY	1 cut(s)	388
BfrI	CTTAAG	1 cut(s)	705
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	1 cut(s)	631
BlsI	GCNGC	1 cut(s)	632
BmcAI	AGTACT	1 cut(s)	545
Bme1390I	CCNGG	5 cut(s)	112, 240, 404, 451, 615
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	206, 641
BmrFI	CCNGG	5 cut(s)	112, 240, 404, 451, 615
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	826
BmuI	ACTGGG	1 cut(s)	154
BpmI	CTGGAG	2 cut(s)	261, 774
Bpu10I	CCTNAGC	1 cut(s)	556
BpuMI	CCSGG	2 cut(s)	404, 615
Bsa29I	ATCGAT	1 cut(s)	955
BsaJI	CCNNGG	2 cut(s)	111, 643
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 381, 557, 696
Bse1I	ACTGG	2 cut(s)	149, 757
BseBI	CCWGG	3 cut(s)	112, 240, 451
BseCI	ATCGAT	1 cut(s)	955
BseDI	CCNNGG	2 cut(s)	111, 643
BseGI	GGATG	1 cut(s)	569
BseLI	CCNNNNNNNGG	4 cut(s)	145, 381, 557, 696
BseNI	ACTGG	2 cut(s)	149, 757
BseRI	GAGGAG	1 cut(s)	959
BseXI	GCAGC	1 cut(s)	642
BseYI	CCCAGC	1 cut(s)	551
BshNI	GGYRCC	1 cut(s)	639
BshVI	ATCGAT	1 cut(s)	955
BsiHKAI	GWGCWC	1 cut(s)	352
BsiSI	CCGG	2 cut(s)	403, 615
BslI	CCNNNNNNNGG	4 cut(s)	145, 381, 557, 696
BsmAI	GTCTC	2 cut(s)	216, 819
BsmBI	CGTCTC	1 cut(s)	819
BsmI	GAATGC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	4 cut(s)	176, 204, 406, 952
Bsp19I	CCATGG	1 cut(s)	643
BspACI	CCGC	1 cut(s)	353
BspDI	ATCGAT	1 cut(s)	955
BspHI	TCATGA	1 cut(s)	287
BspLI	GGNNCC	2 cut(s)	206, 641
BspMAI	CTGCAG	1 cut(s)	674
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	3 cut(s)	199, 212, 414
BspT107I	GGYRCC	1 cut(s)	639
BspTI	CTTAAG	1 cut(s)	705
BsrI	ACTGG	2 cut(s)	149, 757
BssECI	CCNNGG	2 cut(s)	111, 643
BssMI	GATC	4 cut(s)	176, 204, 406, 952
BssT1I	CCWWGG	1 cut(s)	643
Bst2UI	CCWGG	3 cut(s)	112, 240, 451
Bst4CI	ACNGT	4 cut(s)	413, 536, 665, 731
BstAFI	CTTAAG	1 cut(s)	705
BstAPI	GCANNNNNTGC	2 cut(s)	678, 836
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	3 cut(s)	298, 556, 976
BstDSI	CCRYGG	1 cut(s)	643
BstF5I	GGATG	1 cut(s)	569
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	4 cut(s)	179, 207, 409, 955
BstMAI	GTCTC	2 cut(s)	216, 819
BstMBI	GATC	4 cut(s)	176, 204, 406, 952
BstMWI	GCNNNNNNNGC	4 cut(s)	455, 678, 746, 836
BstNI	CCWGG	3 cut(s)	112, 240, 451
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	5 cut(s)	110, 238, 402, 449, 613
BstSFI	CTRYAG	1 cut(s)	670
BstV1I	GCAGC	1 cut(s)	642
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
Bsu15I	ATCGAT	1 cut(s)	955
BsuTUI	ATCGAT	1 cut(s)	955
BtgI	CCRYGG	1 cut(s)	643
BtgZI	GCGATG	2 cut(s)	324, 648
BtsCI	GGATG	1 cut(s)	569
BtsIMutI	CAGTG	2 cut(s)	409, 750
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	231
CaiI	CAGNNNCTG	4 cut(s)	239, 381, 450, 669
CciI	TCATGA	1 cut(s)	287
CfoI	GCGC	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	955
CseI	GACGC	1 cut(s)	836
Csp6I	GTAC	3 cut(s)	108, 544, 640
CspCI	CAANNNNNGTGG	2 cut(s)	739, 774
CviAII	CATG	6 cut(s)	117, 217, 288, 440, 644, 678
CviQI	GTAC	3 cut(s)	108, 544, 640
DdeI	CTNAG	3 cut(s)	298, 556, 976
DpnI	GATC	4 cut(s)	178, 206, 408, 954
DpnII	GATC	4 cut(s)	176, 204, 406, 952
Eco130I	CCWWGG	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	3 cut(s)	110, 238, 449
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
Esp3I	CGTCTC	1 cut(s)	819
FaeI	CATG	6 cut(s)	120, 220, 291, 443, 647, 681
FatI	CATG	6 cut(s)	116, 216, 287, 439, 643, 677
FblI	GTMKAC	1 cut(s)	701
Fnu4HI	GCNGC	1 cut(s)	631
FokI	GGATG	1 cut(s)	576
Fsp4HI	GCNGC	1 cut(s)	631
FspBI	CTAG	2 cut(s)	477, 486
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	1 cut(s)	631
GsaI	CCCAGC	1 cut(s)	555
GsuI	CTGGAG	2 cut(s)	261, 774
HaeII	RGCGCY	1 cut(s)	388
HapII	CCGG	2 cut(s)	403, 615
HgaI	GACGC	1 cut(s)	836
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	6 cut(s)	120, 220, 291, 443, 647, 681
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HincII	GTYRAC	1 cut(s)	335
HindII	GTYRAC	1 cut(s)	335
HinfI	GANTC	2 cut(s)	378, 591
HpaII	CCGG	2 cut(s)	403, 615
HphI	GGTGA	4 cut(s)	27, 83, 186, 260
Hpy166II	GTNNAC	4 cut(s)	91, 335, 483, 702
Hpy188I	TCNGA	4 cut(s)	59, 320, 872, 932
Hpy188III	TCNNGA	3 cut(s)	74, 288, 360
Hpy8I	GTNNAC	4 cut(s)	91, 335, 483, 702
Hpy99I	CGWCG	1 cut(s)	810
HpyAV	CCTTC	3 cut(s)	165, 521, 620
HpyCH4III	ACNGT	4 cut(s)	413, 536, 665, 731
HpyCH4IV	ACGT	1 cut(s)	808
HpyCH4V	TGCA	3 cut(s)	65, 211, 672
HpyF10VI	GCNNNNNNNGC	4 cut(s)	455, 678, 746, 836
HpyF3I	CTNAG	3 cut(s)	298, 556, 976
HpySE526I	ACGT	1 cut(s)	808
Hsp92II	CATG	6 cut(s)	120, 220, 291, 443, 647, 681
HspAI	GCGC	1 cut(s)	385
KpnI	GGTACC	1 cut(s)	643
Kzo9I	GATC	4 cut(s)	176, 204, 406, 952
LmnI	GCTCC	4 cut(s)	355, 392, 692, 914
Lsp1109I	GCAGC	1 cut(s)	642
LweI	GCATC	1 cut(s)	826
MaeI	CTAG	2 cut(s)	477, 486
MaeII	ACGT	1 cut(s)	808
MaeIII	GTNAC	5 cut(s)	20, 134, 155, 530, 725
MalI	GATC	4 cut(s)	178, 206, 408, 954
MboI	GATC	4 cut(s)	176, 204, 406, 952
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	7 cut(s)	121, 162, 505, 621, 655, 694, 883
MmeI	TCCRAC	1 cut(s)	791
MnlI	CCTC	7 cut(s)	291, 554, 560, 778, 807, 878, 980
MseI	TTAA	5 cut(s)	574, 693, 706, 886, 901
MslI	CAYNNNNRTG	2 cut(s)	395, 909
MspCI	CTTAAG	1 cut(s)	705
MspI	CCGG	2 cut(s)	403, 615
MspR9I	CCNGG	5 cut(s)	112, 240, 404, 451, 615
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	3 cut(s)	112, 240, 451
MwoI	GCNNNNNNNGC	4 cut(s)	455, 678, 746, 836
NciI	CCSGG	2 cut(s)	404, 615
NcoI	CCATGG	1 cut(s)	643
NdeII	GATC	4 cut(s)	176, 204, 406, 952
NlaIII	CATG	6 cut(s)	120, 220, 291, 443, 647, 681
NlaIV	GGNNCC	2 cut(s)	206, 641
NmuCI	GTSAC	2 cut(s)	134, 155
NspI	RCATGY	1 cut(s)	220
PagI	TCATGA	1 cut(s)	287
PciI	ACATGT	1 cut(s)	216
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	378, 591
PflFI	GACNNNGTC	1 cut(s)	487
PflMI	CCANNNNNTGG	2 cut(s)	381, 696
PkrI	GCNGC	1 cut(s)	632
PpuMI	RGGWCCY	1 cut(s)	236
PscI	ACATGT	1 cut(s)	216
PshBI	ATTAAT	1 cut(s)	693
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	3 cut(s)	110, 238, 449
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	3 cut(s)	110, 238, 449
PspN4I	GGNNCC	2 cut(s)	206, 641
PspPI	GGNCC	1 cut(s)	236
PspPPI	RGGWCCY	1 cut(s)	236
PsrI	GAACNNNNNNTAC	2 cut(s)	658, 690
PstI	CTGCAG	1 cut(s)	674
PstNI	CAGNNNCTG	4 cut(s)	239, 381, 450, 669
PsuI	RGATCY	1 cut(s)	204
PsyI	GACNNNGTC	1 cut(s)	487
RsaI	GTAC	3 cut(s)	109, 545, 641
RsaNI	GTAC	3 cut(s)	108, 544, 640
RseI	CAYNNNNRTG	2 cut(s)	395, 909
SaqAI	TTAA	5 cut(s)	574, 693, 706, 886, 901
SatI	GCNGC	1 cut(s)	631
Sau3AI	GATC	4 cut(s)	176, 204, 406, 952
Sau96I	GGNCC	1 cut(s)	236
ScaI	AGTACT	1 cut(s)	545
ScrFI	CCNGG	5 cut(s)	112, 240, 404, 451, 615
SduI	GDGCHC	1 cut(s)	352
SfaNI	GCATC	1 cut(s)	826
SfcI	CTRYAG	1 cut(s)	670
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	2 cut(s)	395, 909
SmlI	CTYRAG	1 cut(s)	705
SmoI	CTYRAG	1 cut(s)	705
Sse9I	AATT	7 cut(s)	121, 162, 505, 621, 655, 694, 883
SsiI	CCGC	1 cut(s)	353
SspI	AATATT	1 cut(s)	863
SspMI	CTAG	2 cut(s)	477, 486
StyD4I	CCNGG	5 cut(s)	110, 238, 402, 449, 613
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	4 cut(s)	413, 536, 665, 731
TaiI	ACGT	1 cut(s)	811
TaqI	TCGA	2 cut(s)	877, 955
TasI	AATT	7 cut(s)	121, 162, 505, 621, 655, 694, 883
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	2 cut(s)	378, 591
Tru1I	TTAA	5 cut(s)	574, 693, 706, 886, 901
Tru9I	TTAA	5 cut(s)	574, 693, 706, 886, 901
TscAI	CASTG	2 cut(s)	416, 757
TseFI	GTSAC	2 cut(s)	134, 155
TseI	GCWGC	1 cut(s)	630
Tsp45I	GTSAC	2 cut(s)	134, 155
TspDTI	ATGAA	3 cut(s)	133, 441, 666
TspRI	CASTG	2 cut(s)	416, 757
Tth111I	GACNNNGTC	1 cut(s)	487
Van91I	CCANNNNNTGG	2 cut(s)	381, 696
Vha464I	CTTAAG	1 cut(s)	705
VpaK11BI	GGWCC	1 cut(s)	236
VspI	ATTAAT	1 cut(s)	693
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	701
XspI	CTAG	2 cut(s)	477, 486
ZrmI	AGTACT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.