Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004559

Physical Location & Seq

Genomic Coordinates Forward (+)

15640330 .. 15643422

Gene Structure 3093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCAAAATCACCAGAAGAAGAACACCCTCAGAAGGTTTTTGGTTGGGCTGCCACAGACACTTCTGGGTCACTTTCCCCCTTCCATTTCTCTAGGAGGGAAAATGCTGATGGTGATGTAACAATAAAAGTCCTGTATTGTGGGGTTTGCCATTCAGACTTGCATTCTGTCAAAAATGAATGGGGGATCACCAACTATCCTATCGTACCTGGGCATGAAATTGTTGGTGTTGTGACCAAAACTGGGAAAAGTGTGACGAAATTCAAAGAAGGTGATCGTGTAGGAGTTGGGGTTATAGTTGGATCCTGCAACACATGTGAGCCCTGCCAGCAGGACTTGGAGAACTATTGCCCCAAAGTGATATTCACTTATAACTCCCTTAATCATGACAAAACTAAAACTTATGGTGGTTATTCTGATATGATTGTTGTTGACCATCGCTATGTGCTCCGCTTTCCCGATAACTTACCCCCGGATTCTGGTGCTCCACTTCTATGTGCTGGGATCACTGTGTATAGTCCAATGAAGTATTACGGCATGACAGAGCCTGGAAAGCATTTGGGCGTGGCAGGACTTGGTGGACTTGGTCATATTGCTGTCAAAATTGGTAAGGCATTTGGTTTGAAGGTAACCGTCATCAGTACTTCCCCAGCTAAGGAGGAAGAGGCTATTAACAGACTTGGGGCTGATTCTTTTGTTGTTTCAACTGACCCTGCACAACTGAAGGCAGCGATGGCTACCATGGATTACATAATTGACACAGTATCTGCAGTACATGCCCTTGCTCCATTAATTGGTCTACTTAAGTTGAATGGCAAGCTGATTACTGTGGGTTTGCCTAATATGCCACTGGAGCTGCCTATTTTTCCATTGGTTCTAGGGAGGAAGCTTGTTGGTGGAAGTGACTTTGGAGGGATAAAAGAGACGCAGGAGATGCTTGACTTTTGTGCCAAACACAACATTACCTCCGAAATCGAGCTGATTAAAATGGATTACATTAACACAGCTATGGAGCGGCTTGCCAAAGCAGATGTCAGGTATCGGTTTGTGATAGATGTTGGGAACTCCTTGTCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009735 GO:0009808 GO:0009809 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0045551 GO:0048046 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

360

Amino Acids

38.91

Weight (kDa)

6.26

Isoelectric Point (pI)

27.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	37 - 154	4.9e-28	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	194 - 317	2e-19	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21730 AT2G21890 AT4G39330 AT4G39330
fragaria_vesca	FvH4_1g23790 FvH4_1g23790 FvH4_1g23810
malus_domestica	MD07G1183600.v1.1 MD13G1280800.v1.1
prunus_persica	Prupe.6G161800_v2.0.a1 Prupe.6G162000_v2.0.a1 Prupe.6G162000_v2.0.a1
pyrus_communis	pycom15g30090
rosa_chinensis	RchiOBHm_Chr2g0119681 RchiOBHm_Chr2g0119731
rosa_laevigata	RLG00000018484 RLG00000018488
rosa_multiflora	Rmu_sc0001501.1_g000063 Rmu_sc0001501.1_g000064 Rmu_sc0001501.1_g000065 Rmu_sc0001501.1_g000091 Rmu_sc0018654.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124130 Rroxscaffold_2G00124200
rosa_rugosa	Rorug02G0222900 Rorug02G0223200
rosa_samantha	Rh2BG292100 Rh2BG292400
rosa_wichuraiana	Rw0G003780 Rw2G022420 Rw2G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccBSI	CCGCTC	1 cut(s)	1015
AccI	GTMKAC	1 cut(s)	799
AciI	CCGC	2 cut(s)	451, 1015
AclWI	GGATC	4 cut(s)	194, 297, 310, 512
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	743
AfaI	GTAC	3 cut(s)	207, 643, 774
AfiI	CCNNNNNNNGG	5 cut(s)	34, 243, 479, 655, 794
AflII	CTTAAG	1 cut(s)	803
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	4 cut(s)	265, 625, 705, 811
AjnI	CCWGG	2 cut(s)	208, 547
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	6 cut(s)	653, 820, 856, 889, 979, 1007
AluI	AGCT	6 cut(s)	653, 820, 856, 889, 979, 1007
Alw21I	GWGCWC	2 cut(s)	450, 487
Alw26I	GTCTC	1 cut(s)	917
AlwI	GGATC	4 cut(s)	194, 297, 310, 512
AlwNI	CAGNNNCTG	2 cut(s)	548, 767
ApeKI	GCWGC	3 cut(s)	50, 728, 856
ApoI	RAATTY	1 cut(s)	260
ArsI	GACNNNNNNTTYG	2 cut(s)	1017, 1049
AseI	ATTAAT	1 cut(s)	791
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	4 cut(s)	3, 125, 181, 284
BamHI	GGATCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	324
Bbv12I	GWGCWC	2 cut(s)	450, 487
BbvI	GCAGC	3 cut(s)	37, 740, 843
BccI	CCATC	3 cut(s)	104, 444, 727
BceAI	ACGGC	1 cut(s)	550
BciT130I	CCWGG	2 cut(s)	210, 549
BcnI	CCSGG	1 cut(s)	473
BcoDI	GTCTC	1 cut(s)	917
BfaI	CTAG	2 cut(s)	93, 878
BfmI	CTRYAG	1 cut(s)	768
BfrI	CTTAAG	1 cut(s)	803
BisI	GCNGC	4 cut(s)	51, 729, 857, 1016
BlsI	GCNGC	4 cut(s)	52, 730, 858, 1017
BmcAI	AGTACT	1 cut(s)	643
Bme1390I	CCNGG	3 cut(s)	210, 473, 549
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	3 cut(s)	210, 473, 549
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	924
BmuI	ACTGGG	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	872
Bpu10I	CCTNAGC	1 cut(s)	654
BpuMI	CCSGG	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	209, 471, 741
BsaXI	ACNNNNNCTCC	4 cut(s)	276, 306, 950, 980
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 243, 479, 655, 794
Bse1I	ACTGG	2 cut(s)	247, 855
BseBI	CCWGG	2 cut(s)	210, 549
BseDI	CCNNGG	3 cut(s)	209, 471, 741
BseLI	CCNNNNNNNGG	5 cut(s)	34, 243, 479, 655, 794
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	247, 855
BseXI	GCAGC	3 cut(s)	37, 740, 843
BseYI	CCCAGC	2 cut(s)	500, 649
BsgI	GTGCAG	1 cut(s)	699
BsiHKAI	GWGCWC	2 cut(s)	450, 487
BsiSI	CCGG	1 cut(s)	473
BslI	CCNNNNNNNGG	5 cut(s)	34, 243, 479, 655, 794
BsmAI	GTCTC	1 cut(s)	917
BsmBI	CGTCTC	1 cut(s)	917
BsmI	GAATGC	1 cut(s)	163
Bsp1286I	GDGCHC	3 cut(s)	324, 450, 487
Bsp143I	GATC	4 cut(s)	186, 274, 302, 504
Bsp19I	CCATGG	1 cut(s)	741
BspACI	CCGC	2 cut(s)	451, 1015
BspCNI	CTCAG	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	304
BspMAI	CTGCAG	1 cut(s)	772
BspPI	GGATC	4 cut(s)	194, 297, 310, 512
BspTI	CTTAAG	1 cut(s)	803
BsrBI	CCGCTC	1 cut(s)	1015
BsrI	ACTGG	2 cut(s)	247, 855
BssECI	CCNNGG	3 cut(s)	209, 471, 741
BssMI	GATC	4 cut(s)	186, 274, 302, 504
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	2 cut(s)	210, 549
Bst4CI	ACNGT	4 cut(s)	511, 634, 763, 829
Bst6I	CTCTTC	1 cut(s)	657
BstAFI	CTTAAG	1 cut(s)	803
BstAPI	GCANNNNNTGC	2 cut(s)	776, 934
BstC8I	GCNNGC	3 cut(s)	329, 818, 1020
BstDEI	CTNAG	3 cut(s)	30, 654, 1074
BstDSI	CCRYGG	1 cut(s)	741
BstEII	GGTNACC	1 cut(s)	628
BstKTI	GATC	4 cut(s)	189, 277, 305, 507
BstMAI	GTCTC	1 cut(s)	917
BstMBI	GATC	4 cut(s)	186, 274, 302, 504
BstMWI	GCNNNNNNNGC	7 cut(s)	328, 553, 734, 776, 844, 853, 934
BstNI	CCWGG	2 cut(s)	210, 549
BstNSI	RCATGY	2 cut(s)	318, 779
BstPI	GGTNACC	1 cut(s)	628
BstSCI	CCNGG	3 cut(s)	208, 471, 547
BstSFI	CTRYAG	1 cut(s)	768
BstV1I	GCAGC	3 cut(s)	37, 740, 843
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BtgI	CCRYGG	1 cut(s)	741
BtgZI	GCGATG	2 cut(s)	422, 746
BtsIMutI	CAGTG	2 cut(s)	507, 848
Cac8I	GCNNGC	3 cut(s)	329, 818, 1020
CaiI	CAGNNNCTG	2 cut(s)	548, 767
CciI	TCATGA	1 cut(s)	385
CseI	GACGC	1 cut(s)	934
Csp6I	GTAC	3 cut(s)	206, 642, 773
CviAII	CATG	6 cut(s)	215, 315, 386, 538, 742, 776
CviQI	GTAC	3 cut(s)	206, 642, 773
DdeI	CTNAG	3 cut(s)	30, 654, 1074
DpnI	GATC	4 cut(s)	188, 276, 304, 506
DpnII	GATC	4 cut(s)	186, 274, 302, 504
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	743
Eco91I	GGTNACC	1 cut(s)	628
EcoO65I	GGTNACC	1 cut(s)	628
EcoRII	CCWGG	2 cut(s)	208, 547
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	1 cut(s)	917
FaeI	CATG	6 cut(s)	218, 318, 389, 541, 745, 779
FatI	CATG	6 cut(s)	214, 314, 385, 537, 741, 775
FblI	GTMKAC	1 cut(s)	799
Fnu4HI	GCNGC	4 cut(s)	51, 729, 857, 1016
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	4 cut(s)	51, 729, 857, 1016
FspBI	CTAG	2 cut(s)	93, 878
GluI	GCNGC	4 cut(s)	51, 729, 857, 1016
GsaI	CCCAGC	2 cut(s)	504, 653
GsuI	CTGGAG	1 cut(s)	872
HapII	CCGG	1 cut(s)	473
HgaI	GACGC	1 cut(s)	934
Hin1II	CATG	6 cut(s)	218, 318, 389, 541, 745, 779
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	2 cut(s)	476, 689
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	4 cut(s)	3, 125, 181, 284
Hpy166II	GTNNAC	3 cut(s)	433, 581, 800
Hpy188I	TCNGA	4 cut(s)	33, 157, 418, 970
Hpy188III	TCNNGA	2 cut(s)	386, 458
Hpy8I	GTNNAC	3 cut(s)	433, 581, 800
HpyAV	CCTTC	5 cut(s)	28, 91, 263, 619, 718
HpyCH4III	ACNGT	4 cut(s)	511, 634, 763, 829
HpyCH4V	TGCA	4 cut(s)	163, 309, 716, 770
HpyF10VI	GCNNNNNNNGC	7 cut(s)	328, 553, 734, 776, 844, 853, 934
HpyF3I	CTNAG	3 cut(s)	30, 654, 1074
Hsp92II	CATG	6 cut(s)	218, 318, 389, 541, 745, 779
Kzo9I	GATC	4 cut(s)	186, 274, 302, 504
LmnI	GCTCC	5 cut(s)	453, 490, 790, 853, 1012
Lsp1109I	GCAGC	3 cut(s)	37, 740, 843
LweI	GCATC	1 cut(s)	924
MaeI	CTAG	2 cut(s)	93, 878
MaeIII	GTNAC	6 cut(s)	69, 118, 232, 253, 628, 902
MalI	GATC	4 cut(s)	188, 276, 304, 506
MbiI	CCGCTC	1 cut(s)	1015
MboI	GATC	4 cut(s)	186, 274, 302, 504
MboII	GAAGA	3 cut(s)	29, 32, 674
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	3 cut(s)	324, 450, 487
MluCI	AATT	5 cut(s)	219, 260, 603, 753, 792
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	7 cut(s)	39, 90, 652, 658, 876, 905, 976
MseI	TTAA	6 cut(s)	381, 672, 791, 804, 984, 999
MslI	CAYNNNNRTG	3 cut(s)	441, 493, 1007
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	3 cut(s)	210, 473, 549
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	2 cut(s)	210, 549
MwoI	GCNNNNNNNGC	7 cut(s)	328, 553, 734, 776, 844, 853, 934
NciI	CCSGG	1 cut(s)	473
NcoI	CCATGG	1 cut(s)	741
NdeII	GATC	4 cut(s)	186, 274, 302, 504
NlaIII	CATG	6 cut(s)	218, 318, 389, 541, 745, 779
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	4 cut(s)	69, 232, 253, 902
NspI	RCATGY	2 cut(s)	318, 779
PagI	TCATGA	1 cut(s)	385
PciI	ACATGT	1 cut(s)	314
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	476, 689
PflFI	GACNNNGTC	1 cut(s)	585
PflMI	CCANNNNNTGG	1 cut(s)	794
PkrI	GCNGC	4 cut(s)	52, 730, 858, 1017
PscI	ACATGT	1 cut(s)	314
PshBI	ATTAAT	1 cut(s)	791
PsiI	TTATAA	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	208, 547
PspEI	GGTNACC	1 cut(s)	628
PspFI	CCCAGC	2 cut(s)	500, 649
PspGI	CCWGG	2 cut(s)	208, 547
PspN4I	GGNNCC	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	772
PstNI	CAGNNNCTG	2 cut(s)	548, 767
PsuI	RGATCY	1 cut(s)	302
PsyI	GACNNNGTC	1 cut(s)	585
RsaI	GTAC	3 cut(s)	207, 643, 774
RsaNI	GTAC	3 cut(s)	206, 642, 773
RseI	CAYNNNNRTG	3 cut(s)	441, 493, 1007
SaqAI	TTAA	6 cut(s)	381, 672, 791, 804, 984, 999
SatI	GCNGC	4 cut(s)	51, 729, 857, 1016
Sau3AI	GATC	4 cut(s)	186, 274, 302, 504
ScaI	AGTACT	1 cut(s)	643
ScrFI	CCNGG	3 cut(s)	210, 473, 549
SduI	GDGCHC	3 cut(s)	324, 450, 487
SfaNI	GCATC	1 cut(s)	924
SfcI	CTRYAG	1 cut(s)	768
SmiMI	CAYNNNNRTG	3 cut(s)	441, 493, 1007
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	5 cut(s)	219, 260, 603, 753, 792
SsiI	CCGC	2 cut(s)	451, 1015
SspMI	CTAG	2 cut(s)	93, 878
StyD4I	CCNGG	3 cut(s)	208, 471, 547
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	4 cut(s)	511, 634, 763, 829
TaqI	TCGA	1 cut(s)	975
TasI	AATT	5 cut(s)	219, 260, 603, 753, 792
TatI	WGTACW	2 cut(s)	641, 772
TauI	GCSGC	1 cut(s)	1018
TfiI	GAWTC	2 cut(s)	476, 689
Tru1I	TTAA	6 cut(s)	381, 672, 791, 804, 984, 999
Tru9I	TTAA	6 cut(s)	381, 672, 791, 804, 984, 999
TscAI	CASTG	2 cut(s)	514, 855
TseFI	GTSAC	4 cut(s)	69, 232, 253, 902
TseI	GCWGC	3 cut(s)	50, 728, 856
Tsp45I	GTSAC	4 cut(s)	69, 232, 253, 902
TspDTI	ATGAA	3 cut(s)	192, 231, 539
TspRI	CASTG	2 cut(s)	514, 855
Tth111I	GACNNNGTC	1 cut(s)	585
Van91I	CCANNNNNTGG	1 cut(s)	794
Vha464I	CTTAAG	1 cut(s)	803
VspI	ATTAAT	1 cut(s)	791
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	2 cut(s)	318, 779
XmiI	GTMKAC	1 cut(s)	799
XspI	CTAG	2 cut(s)	93, 878
ZrmI	AGTACT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.