Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004559

Physical Location & Seq

Genomic Coordinates Reverse (-)

15072051 .. 15074129

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G161800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGATTGTTGTTCACCATCGCTATGTGCTCCGCTTTCCAGATAACTTAGCCCTTGATGCGGGTGCACCACTTTTATGTGCTGGGATCACTGTGTACAGTCCAATGAAATATTATGGCATGACTGAGCCTGGAAAGCATTTGGGTGTGGCAGGACTTGGTGGGCTTGGTCATGTGGCTGTGAAGATTGGTAAGGCTTTTGGTTTGAAAGTGACTGTCATCAGTTCCTCCCCAGGAAAGGAGGATGAGGCTGTTAAGAGACTTGGAGCTGATTCTTTTCTCCTCTCAAGTGACCCTGCAAAATTGAAGGCAGCAATGGGTACCATGGATTACATCATTGACACGGTGTCTGCAGTTCATGCGTTGGCTCCATTAATTGGTCTACTGAAGCTGAATGGGAAGCTGGTCACGGTGGGTTTGCCTGACAAGCCCCTGGAGTTGCCAATCTTTCCCTTAGTTTTGGGTATGCCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009735 GO:0009808 GO:0009809 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0045551 GO:0048046 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

158

Amino Acids

16.45

Weight (kDa)

8.99

Isoelectric Point (pI)

22.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21730 AT2G21890 AT4G39330 AT4G39330
fragaria_vesca	FvH4_1g23790 FvH4_1g23790 FvH4_1g23810
malus_domestica	MD07G1183600.v1.1 MD13G1280800.v1.1
prunus_persica	Prupe.6G161800_v2.0.a1 Prupe.6G162000_v2.0.a1 Prupe.6G162000_v2.0.a1
pyrus_communis	pycom15g30090
rosa_chinensis	RchiOBHm_Chr2g0119681 RchiOBHm_Chr2g0119731
rosa_laevigata	RLG00000018484 RLG00000018488
rosa_multiflora	Rmu_sc0001501.1_g000063 Rmu_sc0001501.1_g000064 Rmu_sc0001501.1_g000065 Rmu_sc0001501.1_g000091 Rmu_sc0018654.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124130 Rroxscaffold_2G00124200
rosa_rugosa	Rorug02G0222900 Rorug02G0223200
rosa_samantha	Rh2BG292100 Rh2BG292400
rosa_wichuraiana	Rw0G003780 Rw2G022420 Rw2G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	317
AccB7I	CCANNNNNTGG	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	379
AciI	CCGC	2 cut(s)	31, 59
AclWI	GGATC	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	2 cut(s)	95, 319
AfiI	CCNNNNNNNGG	3 cut(s)	58, 235, 374
AgsI	TTSAA	2 cut(s)	205, 304
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	3 cut(s)	127, 229, 429
AluBI	AGCT	3 cut(s)	266, 388, 400
AluI	AGCT	3 cut(s)	266, 388, 400
Alw21I	GWGCWC	2 cut(s)	30, 67
Alw26I	GTCTC	1 cut(s)	250
Alw44I	GTGCAC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	92
ApaLI	GTGCAC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	308
AseI	ATTAAT	1 cut(s)	371
Asp718I	GGTACC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	317
Bbv12I	GWGCWC	2 cut(s)	30, 67
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	1 cut(s)	24
BciT130I	CCWGG	3 cut(s)	129, 231, 431
BcoDI	GTCTC	1 cut(s)	250
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	3 cut(s)	129, 231, 431
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmiI	GGNNCC	2 cut(s)	319, 366
BmrFI	CCNGG	3 cut(s)	129, 231, 431
BmsI	GCATC	1 cut(s)	46
BpmI	CTGGAG	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	268
BsaJI	CCNNGG	3 cut(s)	229, 321, 429
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 235, 374
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	3 cut(s)	129, 231, 431
BseDI	CCNNGG	3 cut(s)	229, 321, 429
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	3 cut(s)	58, 235, 374
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	320
BseYI	CCCAGC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	317
BsiHKAI	GWGCWC	2 cut(s)	30, 67
BslI	CCNNNNNNNGG	3 cut(s)	58, 235, 374
BsmAI	GTCTC	1 cut(s)	250
Bsp1286I	GDGCHC	2 cut(s)	30, 67
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	84
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	2 cut(s)	31, 59
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	319, 366
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	318
BsrGI	TGTACA	1 cut(s)	93
BssECI	CCNNGG	3 cut(s)	229, 321, 429
BssMI	GATC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	3 cut(s)	129, 231, 431
Bst4CI	ACNGT	5 cut(s)	91, 98, 214, 343, 409
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstAUI	TGTACA	1 cut(s)	93
BstDEI	CTNAG	3 cut(s)	46, 123, 451
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 133, 356, 424
BstNI	CCWGG	3 cut(s)	129, 231, 431
BstSCI	CCNGG	3 cut(s)	127, 229, 429
BstSFI	CTRYAG	1 cut(s)	348
BstSLI	GKGCMC	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	320
BtgI	CCRYGG	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	2
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	94, 318
CviAII	CATG	4 cut(s)	118, 170, 322, 356
CviQI	GTAC	2 cut(s)	94, 318
DdeI	CTNAG	3 cut(s)	46, 123, 451
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
DriI	GACNNNNNGTC	1 cut(s)	343
Eam1105I	GACNNNNNGTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	404
EcoRII	CCWGG	3 cut(s)	127, 229, 429
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	4 cut(s)	121, 173, 325, 359
FaiI	YATR	8 cut(s)	24, 76, 114, 119, 171, 323, 357, 464
FatI	CATG	4 cut(s)	117, 169, 321, 355
FauI	CCCGC	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	309
GsaI	CCCAGC	1 cut(s)	84
GsuI	CTGGAG	1 cut(s)	452
Hin1II	CATG	4 cut(s)	121, 173, 325, 359
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	1 cut(s)	5
Hpy166II	GTNNAC	4 cut(s)	13, 65, 94, 380
Hpy188I	TCNGA	1 cut(s)	473
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	4 cut(s)	13, 65, 94, 380
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	5 cut(s)	91, 98, 214, 343, 409
HpyCH4V	TGCA	3 cut(s)	65, 296, 350
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 133, 356, 424
HpyF3I	CTNAG	3 cut(s)	46, 123, 451
Hsp92II	CATG	4 cut(s)	121, 173, 325, 359
KpnI	GGTACC	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	3 cut(s)	33, 263, 370
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	1 cut(s)	46
MaeIII	GTNAC	3 cut(s)	208, 287, 403
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	30, 67
MluCI	AATT	2 cut(s)	299, 372
MnlI	CCTC	4 cut(s)	232, 235, 238, 290
MseI	TTAA	2 cut(s)	252, 371
MslI	CAYNNNNRTG	3 cut(s)	21, 73, 141
MspR9I	CCNGG	3 cut(s)	129, 231, 431
MvaI	CCWGG	3 cut(s)	129, 231, 431
MwoI	GCNNNNNNNGC	4 cut(s)	56, 133, 356, 424
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	4 cut(s)	121, 173, 325, 359
NlaIV	GGNNCC	2 cut(s)	319, 366
NmuCI	GTSAC	3 cut(s)	208, 287, 403
PfeI	GAWTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	310
PshBI	ATTAAT	1 cut(s)	371
Psp6I	CCWGG	3 cut(s)	127, 229, 429
PspFI	CCCAGC	1 cut(s)	80
PspGI	CCWGG	3 cut(s)	127, 229, 429
PspN4I	GGNNCC	2 cut(s)	319, 366
PstI	CTGCAG	1 cut(s)	352
RsaI	GTAC	2 cut(s)	95, 319
RsaNI	GTAC	2 cut(s)	94, 318
RseI	CAYNNNNRTG	3 cut(s)	21, 73, 141
SaqAI	TTAA	2 cut(s)	252, 371
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	84
ScrFI	CCNGG	3 cut(s)	129, 231, 431
SduI	GDGCHC	2 cut(s)	30, 67
SetI	ASST	3 cut(s)	268, 390, 402
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	348
SmiMI	CAYNNNNRTG	3 cut(s)	21, 73, 141
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	2 cut(s)	299, 372
SsiI	CCGC	2 cut(s)	31, 59
SspI	AATATT	1 cut(s)	110
StyD4I	CCNGG	3 cut(s)	127, 229, 429
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	5 cut(s)	91, 98, 214, 343, 409
TasI	AATT	2 cut(s)	299, 372
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	252, 371
Tru9I	TTAA	2 cut(s)	252, 371
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	3 cut(s)	208, 287, 403
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	3 cut(s)	208, 287, 403
TspDTI	ATGAA	2 cut(s)	119, 344
TspRI	CASTG	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	374
VneI	GTGCAC	1 cut(s)	63
VspI	ATTAAT	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.