AT2G21890

Cinnamyl alcohol dehydrogenase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
9331058 .. 9332646
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21890.1

Sequence Viewer

Length: 1128 bp
ATGGTAGATCAAAATAGAGCATTTGGTTGGGCGGCCAACGACGAATCGGGCGTCCTCTCTCCATTTCATTTCTCTAGAAGAGAAAATGGTGAGAACGATGTAACAGTGAAGATCTTGTTCTGTGGTGTTTGTCACTCTGATCTTCATACCATCAAGAACCATTGGGGATTCTCTCGTTACCCCATTATTCCCGGGCATGAAATCGTTGGAATAGCAACAAAAGTTGGGAAGAATGTGACAAAGTTTAAAGAAGGAGACCGAGTAGGAGTAGGCGTAATAATCGGTTCATGCCAATCATGTGAATCATGTAACCAAGACTTAGAAAACTATTGTCCTAAAGTCGTTTTCACATACAACTCTCGTTCCTCTGACGGAACCAGAAACCAAGGTGGTTATTCCGACGTAATTGTTGTCGATCACCGCTTTGTCCTAAGCATTCCCGACGGTTTACCAAGCGATTCAGGCGCGCCGCTGCTCTGTGCTGGAATCACTGTGTACAGTCCCATGAAGTATTATGGCATGACTAAAGAATCAGGGAAACGTTTAGGTGTGAATGGACTTGGTGGACTTGGTCATATCGCTGTTAAGATTGGTAAAGCCTTTGGTTTAAGAGTTACTGTGATTAGTAGGTCATCAGAGAAAGAGAGAGAAGCAATTGATCGACTCGGTGCTGATTCGTTTCTTGTTACAACGGATTCTCAAAAGATGAAGGAAGCAGTTGGAACTATGGATTTCATTATCGATACGGTATCAGCAGAACATGCTCTATTACCTTTGTTTAGTTTGCTTAAAGTGAGTGGAAAGCTTGTGGCTTTAGGCTTGCTGGAGAAGCCACTCGACCTGCCAATTTTCCCTCTAGTTCTCGGAAGGAAAATGGTGGGAGGAAGTCAGATTGGAGGGATGAAGGAGACACAAGAGATGCTTGAGTTCTGTGCCAAGCATAAAATCGTTTCGGATATTGAGCTCATAAAGATGAGTGATATCAACTCTGCGATGGACCGTTTGGTTAAATCTGATGTCAGGTACCGGTTCGTGATCGATGTGGCCAACTCTTTACTCCCTGAGTCGTCAGCTGAGATTTTAACGGAGCATGTCGACCATGGAGTCTCGATCACGTCTAGATTCTGA

Protein Analysis

375

Amino Acids

40.89

Weight (kDa)

6.6

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 30 - 148 1.8e-26 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 189 - 312 2.8e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1103
Acc36I ACCTGC 1 cut(s) 849
Acc65I GGTACC 1 cut(s) 1023
AccB1I GGYRCC 1 cut(s) 1023
AccI GTMKAC 1 cut(s) 1095
AccII CGCG 1 cut(s) 467
AciI CCGC 3 cut(s) 32, 421, 470
AclI AACGTT 1 cut(s) 541
AcoI YGGCCR 2 cut(s) 33, 1044
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 497, 1025
AgeI ACCGGT 1 cut(s) 1026
AjiI CACGTC 1 cut(s) 1116
AluBI AGCT 3 cut(s) 805, 964, 1073
AluI AGCT 3 cut(s) 805, 964, 1073
Alw21I GWGCWC 1 cut(s) 966
Alw26I GTCTC 3 cut(s) 249, 902, 1111
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 2 cut(s) 33, 1044
ApeKI GCWGC 1 cut(s) 472
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
AscI GGCGCGCC 1 cut(s) 465
AsiGI ACCGGT 1 cut(s) 1026
Asp718I GGTACC 1 cut(s) 1023
AspLEI GCGC 2 cut(s) 467, 469
AspS9I GGNCC 1 cut(s) 997
AsuC2I CCSGG 2 cut(s) 192, 193
AsuHPI GGTGA 2 cut(s) 101, 410
AvaI CYCGRG 1 cut(s) 191
AvaII GGWCC 1 cut(s) 997
BalI TGGCCA 1 cut(s) 1046
BanI GGYRCC 1 cut(s) 1023
BanII GRGCYC 1 cut(s) 966
Bbv12I GWGCWC 1 cut(s) 966
BbvI GCAGC 1 cut(s) 459
BccI CCATC 2 cut(s) 158, 988
BcnI CCSGG 2 cut(s) 192, 193
BcoDI GTCTC 3 cut(s) 249, 902, 1111
BfaI CTAG 3 cut(s) 75, 857, 1119
BfuAI ACCTGC 1 cut(s) 849
BglII AGATCT 1 cut(s) 111
BisI GCNGC 3 cut(s) 33, 470, 473
BlsI GCNGC 3 cut(s) 34, 471, 474
Bme1390I CCNGG 2 cut(s) 192, 193
Bme18I GGWCC 1 cut(s) 997
BmeT110I CYCGRG 1 cut(s) 191
BmgBI CACGTC 1 cut(s) 1116
BmgT120I GGNCC 1 cut(s) 997
BmiI GGNNCC 2 cut(s) 376, 1025
BmrFI CCNGG 2 cut(s) 192, 193
BmsI GCATC 1 cut(s) 909
BpmI CTGGAG 1 cut(s) 845
Bpu10I CCTNAGC 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 944
BpuMI CCSGG 2 cut(s) 192, 193
Bsa29I ATCGAT 2 cut(s) 741, 1038
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 3 cut(s) 191, 385, 1099
BsaWI WCCGGW 1 cut(s) 1026
BsaXI ACNNNNNCTCC 4 cut(s) 246, 258, 276, 288
Bse118I RCCGGY 1 cut(s) 1026
BseCI ATCGAT 2 cut(s) 741, 1038
BseDI CCNNGG 3 cut(s) 191, 385, 1099
BseGI GGATG 1 cut(s) 906
BseMII CTCAG 2 cut(s) 1053, 1065
BsePI GCGCGC 1 cut(s) 465
BseXI GCAGC 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 467
BshFI GGCC 2 cut(s) 35, 1046
BshNI GGYRCC 1 cut(s) 1023
BshTI ACCGGT 1 cut(s) 1026
BshVI ATCGAT 2 cut(s) 741, 1038
BsiHKAI GWGCWC 1 cut(s) 966
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 2 cut(s) 192, 1027
BslFI GGGAC 1 cut(s) 486
BsmAI GTCTC 3 cut(s) 249, 902, 1111
BsmFI GGGAC 1 cut(s) 486
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 2 cut(s) 35, 1046
Bso31I GGTCTC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 966
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 7 cut(s) 7, 111, 139, 415, 658, 1035, 1110
Bsp19I CCATGG 1 cut(s) 1099
BspACI CCGC 3 cut(s) 32, 421, 470
BspANI GGCC 2 cut(s) 35, 1046
BspCNI CTCAG 2 cut(s) 1054, 1066
BspDI ATCGAT 2 cut(s) 741, 1038
BspFNI CGCG 1 cut(s) 467
BspLI GGNNCC 2 cut(s) 376, 1025
BspMI ACCTGC 1 cut(s) 849
BspT107I GGYRCC 1 cut(s) 1023
BspTNI GGTCTC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 1026
BsrGI TGTACA 1 cut(s) 495
BssAI RCCGGY 1 cut(s) 1026
BssECI CCNNGG 3 cut(s) 191, 385, 1099
BssHII GCGCGC 1 cut(s) 465
BssMI GATC 7 cut(s) 7, 111, 139, 415, 658, 1035, 1110
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 2 cut(s) 385, 1099
Bst4CI ACNGT 7 cut(s) 106, 446, 493, 500, 619, 748, 1001
Bst6I CTCTTC 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 761
BstAUI TGTACA 1 cut(s) 495
BstC8I GCNNGC 2 cut(s) 467, 821
BstDEI CTNAG 4 cut(s) 319, 431, 1062, 1074
BstDSI CCRYGG 1 cut(s) 1099
BstF5I GGATG 1 cut(s) 906
BstFNI CGCG 1 cut(s) 467
BstHHI GCGC 2 cut(s) 467, 469
BstKTI GATC 7 cut(s) 10, 114, 142, 418, 661, 1038, 1113
BstMAI GTCTC 3 cut(s) 249, 902, 1111
BstMBI GATC 7 cut(s) 7, 111, 139, 415, 658, 1035, 1110
BstMWI GCNNNNNNNGC 3 cut(s) 462, 761, 829
BstNSI RCATGY 2 cut(s) 764, 1094
BstSCI CCNGG 2 cut(s) 190, 191
BstUI CGCG 1 cut(s) 467
BstV1I GCAGC 1 cut(s) 459
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
Bsu15I ATCGAT 2 cut(s) 741, 1038
BsuRI GGCC 2 cut(s) 35, 1046
BsuTUI ATCGAT 2 cut(s) 741, 1038
BtgI CCRYGG 1 cut(s) 1099
BtgZI GCGATG 1 cut(s) 1007
BtrI CACGTC 1 cut(s) 1116
BtsCI GGATG 1 cut(s) 906
BtsIMutI CAGTG 2 cut(s) 111, 489
BveI ACCTGC 1 cut(s) 849
Cac8I GCNNGC 2 cut(s) 467, 821
CfoI GCGC 2 cut(s) 467, 469
Cfr10I RCCGGY 1 cut(s) 1026
Cfr13I GGNCC 1 cut(s) 997
Cfr9I CCCGGG 1 cut(s) 191
ClaI ATCGAT 2 cut(s) 741, 1038
CseI GACGC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 496, 1024
CspAI ACCGGT 1 cut(s) 1026
CviAII CATG 9 cut(s) 197, 288, 297, 306, 505, 520, 761, 1091, 1100
CviJI RGCY 9 cut(s) 35, 599, 805, 812, 819, 832, 964, 1046, 1073
CviKI_1 RGCY 9 cut(s) 35, 599, 805, 812, 819, 832, 964, 1046, 1073
CviQI GTAC 2 cut(s) 496, 1024
DdeI CTNAG 4 cut(s) 319, 431, 1062, 1074
DpnI GATC 7 cut(s) 9, 113, 141, 417, 660, 1037, 1112
DpnII GATC 7 cut(s) 7, 111, 139, 415, 658, 1035, 1110
DraI TTTAAA 1 cut(s) 247
DrdI GACNNNNNNGTC 1 cut(s) 1103
DseDI GACNNNNNNGTC 1 cut(s) 1103
EaeI YGGCCR 2 cut(s) 33, 1044
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 964
Eco130I CCWWGG 2 cut(s) 385, 1099
Eco24I GRGCYC 1 cut(s) 966
Eco31I GGTCTC 1 cut(s) 249
Eco32I GATATC 1 cut(s) 982
Eco47I GGWCC 1 cut(s) 997
Eco53kI GAGCTC 1 cut(s) 964
Eco88I CYCGRG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 964
EcoRV GATATC 1 cut(s) 982
EcoT14I CCWWGG 2 cut(s) 385, 1099
EcoT38I GRGCYC 1 cut(s) 966
ErhI CCWWGG 2 cut(s) 385, 1099
FaeI CATG 9 cut(s) 200, 291, 300, 309, 508, 523, 764, 1094, 1103
FalI AAGNNNNNCTT 2 cut(s) 906, 938
FaqI GGGAC 1 cut(s) 486
FatI CATG 9 cut(s) 196, 287, 296, 305, 504, 519, 760, 1090, 1099
FblI GTMKAC 1 cut(s) 1095
Fnu4HI GCNGC 3 cut(s) 33, 470, 473
FokI GGATG 1 cut(s) 913
FriOI GRGCYC 1 cut(s) 966
Fsp4HI GCNGC 3 cut(s) 33, 470, 473
FspBI CTAG 3 cut(s) 75, 857, 1119
GlaI GCGC 2 cut(s) 466, 468
GluI GCNGC 3 cut(s) 33, 470, 473
GsuI CTGGAG 1 cut(s) 845
HaeIII GGCC 2 cut(s) 35, 1046
HapII CCGG 2 cut(s) 192, 1027
HgaI GACGC 1 cut(s) 40
HhaI GCGC 2 cut(s) 467, 469
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 9 cut(s) 200, 291, 300, 309, 508, 523, 764, 1094, 1103
Hin6I GCGC 2 cut(s) 465, 467
HinP1I GCGC 2 cut(s) 465, 467
HincII GTYRAC 1 cut(s) 1096
HindII GTYRAC 1 cut(s) 1096
HindIII AAGCTT 1 cut(s) 803
HpaII CCGG 2 cut(s) 192, 1027
HphI GGTGA 2 cut(s) 101, 410
Hpy166II GTNNAC 4 cut(s) 449, 496, 566, 1096
Hpy188I TCNGA 9 cut(s) 139, 370, 400, 637, 866, 891, 955, 1015, 1127
Hpy188III TCNNGA 6 cut(s) 75, 154, 440, 1033, 1108, 1119
Hpy8I GTNNAC 4 cut(s) 449, 496, 566, 1096
Hpy99I CGWCG 3 cut(s) 44, 404, 446
HpyAV CCTTC 4 cut(s) 245, 703, 861, 898
HpyCH4III ACNGT 7 cut(s) 106, 446, 493, 500, 619, 748, 1001
HpyCH4IV ACGT 3 cut(s) 402, 541, 1115
HpyF10VI GCNNNNNNNGC 3 cut(s) 462, 761, 829
HpyF3I CTNAG 4 cut(s) 319, 431, 1062, 1074
HpySE526I ACGT 3 cut(s) 402, 541, 1115
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 9 cut(s) 200, 291, 300, 309, 508, 523, 764, 1094, 1103
HspAI GCGC 2 cut(s) 465, 467
KpnI GGTACC 1 cut(s) 1027
Kzo9I GATC 7 cut(s) 7, 111, 139, 415, 658, 1035, 1110
LmnI GCTCC 1 cut(s) 1087
Lsp1109I GCAGC 1 cut(s) 459
LweI GCATC 1 cut(s) 909
MaeI CTAG 3 cut(s) 75, 857, 1119
MaeII ACGT 3 cut(s) 402, 541, 1115
MaeIII GTNAC 7 cut(s) 100, 131, 176, 235, 308, 613, 685
MalI GATC 7 cut(s) 9, 113, 141, 417, 660, 1037, 1112
MboI GATC 7 cut(s) 7, 111, 139, 415, 658, 1035, 1110
MboII GAAGA 4 cut(s) 90, 121, 134, 241
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 966
MlsI TGGCCA 1 cut(s) 1046
MluCI AATT 3 cut(s) 405, 654, 846
MluNI TGGCCA 1 cut(s) 1046
MlyI GAGTC 3 cut(s) 657, 1073, 1113
MmeI TCCRAC 3 cut(s) 187, 423, 700
MnlI CCTC 5 cut(s) 65, 376, 864, 875, 890
Mox20I TGGCCA 1 cut(s) 1046
MscI TGGCCA 1 cut(s) 1046
MseI TTAA 6 cut(s) 246, 585, 608, 789, 1008, 1082
MslI CAYNNNNRTG 1 cut(s) 971
Msp20I TGGCCA 1 cut(s) 1046
MspA1I CMGCKG 2 cut(s) 472, 1073
MspI CCGG 2 cut(s) 192, 1027
MspR9I CCNGG 2 cut(s) 192, 193
MunI CAATTG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 435
MvnI CGCG 1 cut(s) 467
MwoI GCNNNNNNNGC 3 cut(s) 462, 761, 829
NciI CCSGG 2 cut(s) 192, 193
NcoI CCATGG 1 cut(s) 1099
NdeII GATC 7 cut(s) 7, 111, 139, 415, 658, 1035, 1110
NlaIII CATG 9 cut(s) 200, 291, 300, 309, 508, 523, 764, 1094, 1103
NlaIV GGNNCC 2 cut(s) 376, 1025
NmuCI GTSAC 2 cut(s) 131, 235
NspI RCATGY 2 cut(s) 764, 1094
PalAI GGCGCGCC 1 cut(s) 465
PauI GCGCGC 1 cut(s) 465
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 435
PfeI GAWTC 9 cut(s) 44, 168, 302, 458, 486, 530, 674, 695, 1122
PflFI GACNNNGTC 1 cut(s) 570
PinAI ACCGGT 1 cut(s) 1026
PkrI GCNGC 3 cut(s) 34, 471, 474
PleI GAGTC 3 cut(s) 657, 1072, 1112
PpsI GAGTC 3 cut(s) 657, 1072, 1112
Psp124BI GAGCTC 1 cut(s) 966
Psp1406I AACGTT 1 cut(s) 541
PspN4I GGNNCC 2 cut(s) 376, 1025
PspPI GGNCC 1 cut(s) 997
PsuI RGATCY 1 cut(s) 111
PsyI GACNNNGTC 1 cut(s) 570
PteI GCGCGC 1 cut(s) 465
PvuII CAGCTG 1 cut(s) 1073
RsaI GTAC 2 cut(s) 497, 1025
RsaNI GTAC 2 cut(s) 496, 1024
RseI CAYNNNNRTG 1 cut(s) 971
SacI GAGCTC 1 cut(s) 966
SalI GTCGAC 1 cut(s) 1094
SaqAI TTAA 6 cut(s) 246, 585, 608, 789, 1008, 1082
SatI GCNGC 3 cut(s) 33, 470, 473
Sau3AI GATC 7 cut(s) 7, 111, 139, 415, 658, 1035, 1110
Sau96I GGNCC 1 cut(s) 997
SchI GAGTC 3 cut(s) 657, 1073, 1113
ScrFI CCNGG 2 cut(s) 192, 193
SduI GDGCHC 1 cut(s) 966
SfaNI GCATC 1 cut(s) 909
SgsI GGCGCGCC 1 cut(s) 465
SinI GGWCC 1 cut(s) 997
SmaI CCCGGG 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 971
SmlI CTYRAG 1 cut(s) 923
SmoI CTYRAG 1 cut(s) 923
Sse9I AATT 3 cut(s) 405, 654, 846
SsiI CCGC 3 cut(s) 32, 421, 470
SspMI CTAG 3 cut(s) 75, 857, 1119
SstI GAGCTC 1 cut(s) 966
StyD4I CCNGG 2 cut(s) 190, 191
StyI CCWWGG 2 cut(s) 385, 1099
TaaI ACNGT 7 cut(s) 106, 446, 493, 500, 619, 748, 1001
TaiI ACGT 3 cut(s) 405, 544, 1118
TaqI TCGA 7 cut(s) 414, 661, 741, 837, 1038, 1095, 1109
TaqII GACCGA 1 cut(s) 273
TasI AATT 3 cut(s) 405, 654, 846
TatI WGTACW 1 cut(s) 495
TauI GCSGC 2 cut(s) 35, 472
TfiI GAWTC 9 cut(s) 44, 168, 302, 458, 486, 530, 674, 695, 1122
Tru1I TTAA 6 cut(s) 246, 585, 608, 789, 1008, 1082
Tru9I TTAA 6 cut(s) 246, 585, 608, 789, 1008, 1082
TscAI CASTG 2 cut(s) 111, 496
TseFI GTSAC 2 cut(s) 131, 235
TseI GCWGC 1 cut(s) 472
Tsp45I GTSAC 2 cut(s) 131, 235
TspDTI ATGAA 8 cut(s) 56, 134, 213, 276, 521, 722, 724, 917
TspGWI ACGGA 3 cut(s) 387, 707, 1100
TspMI CCCGGG 1 cut(s) 191
TspRI CASTG 2 cut(s) 111, 496
Tth111I GACNNNGTC 1 cut(s) 570
VpaK11BI GGWCC 1 cut(s) 997
XbaI TCTAGA 2 cut(s) 74, 1118
XceI RCATGY 2 cut(s) 764, 1094
XmaI CCCGGG 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 1095
XspI CTAG 3 cut(s) 75, 857, 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.