Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004559

Physical Location & Seq

Genomic Coordinates Forward (+)

30668079 .. 30670756

Gene Structure 2678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018488

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCAAAATCACCAGAAGAACACCCTCAGAAGGTTTTTGGTTGGGCTGCCAGAGACTCTTCTGGGTCACTTTCCCCCTTTCATTTCTCAAGAAGGGAAAATGCTGATGGTGATGTAACAATAAAAGTCCTCTATTGTGGGGTTTGCCATTCAGACTTGCATTTTGTCAAGAACGAATGGGGGATCACCAACTATCCTATCGTACCAGGGCATGAAATGGTTGGTGTTGTGACCAAAACTGGGAAAAGCGTGACAAAATTTAAAGAAGGTGATCGTGTAGGAGTTGGGGTTATTGTGGGATCCTGCAACACATGTGAGACTTGCCAGCAGGACTTGGAGAACTATTGCCCCAAAGTGATATTCACATATAACTCCCACAATCATGACAAAACTAAAACTTATGGTGGTTATTCTGATATGATTGTTGTTGACCATCGCTTTGTGCTCCGCTTTCCTGATAACTTACCCCCTGATTCTGGTGCTCCACTTCTATGTGCTGGGATCACTGTGTATAGTCCAATGAAGTACTACGGCATGACAGAGCCTGGAAAGCATTTGGGCGTGGCAGGATTAGGTGGACTAGGTCATATTGCTGTCAAAATTGGTAAGGCATTTGGTTTGAAGGTAACTGTCATCAGTACTTCCCCAGCTAAGGAGGATGAGGCTATTAACAGACTAGGGGCTGATTCTTTTGTTGTTTCAACTGACCCTGCACAAGTGAAGGCAGCGATGGGTACCATGGATTACATAATTGACACAGTAGCTGCAGTTCATGCCCTTGCTCCATTAATTGGTCTACTTAAGCTGAATGGGAAGCTGGTTACTGTGGGTTTGCCTAATAAGCCACTGGAGTTGCCTATATTTCCATTGGTTCTGGGGAGGAAGCTCGTTGGTGGAAGTGACATTGGAGGGATAAAAGAGACGCAGGAGATGCTTGACTTTTGTGCCAAACACAATATTACCTCCGAAATCGAGCTAATTAAAATGGACTACATTAACACAGCTATGGAACGACTTGCCAAATCAGATGTCAGGTATCGGTTTGTGATCGATGTGGGGAACTCCTTGTCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009735 GO:0009808 GO:0009809 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0045551 GO:0048046 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

359

Amino Acids

38.82

Weight (kDa)

6.86

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	36 - 153	1.8e-28	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	193 - 316	2e-20	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21730 AT2G21890 AT4G39330 AT4G39330
fragaria_vesca	FvH4_1g23790 FvH4_1g23790 FvH4_1g23810
malus_domestica	MD07G1183600.v1.1 MD13G1280800.v1.1
prunus_persica	Prupe.6G161800_v2.0.a1 Prupe.6G162000_v2.0.a1 Prupe.6G162000_v2.0.a1
pyrus_communis	pycom15g30090
rosa_chinensis	RchiOBHm_Chr2g0119681 RchiOBHm_Chr2g0119731
rosa_laevigata	RLG00000018484 RLG00000018488
rosa_multiflora	Rmu_sc0001501.1_g000063 Rmu_sc0001501.1_g000064 Rmu_sc0001501.1_g000065 Rmu_sc0001501.1_g000091 Rmu_sc0018654.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124130 Rroxscaffold_2G00124200
rosa_rugosa	Rorug02G0222900 Rorug02G0223200
rosa_samantha	Rh2BG292100 Rh2BG292400
rosa_wichuraiana	Rw0G003780 Rw2G022420 Rw2G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	734
AccB1I	GGYRCC	1 cut(s)	734
AccB7I	CCANNNNNTGG	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	796
AciI	CCGC	1 cut(s)	448
AclWI	GGATC	4 cut(s)	191, 294, 307, 509
AcsI	RAATTY	1 cut(s)	257
AfaI	GTAC	4 cut(s)	204, 527, 640, 736
AfiI	CCNNNNNNNGG	5 cut(s)	31, 240, 476, 652, 791
AflII	CTTAAG	1 cut(s)	800
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	2 cut(s)	622, 702
AjnI	CCWGG	2 cut(s)	205, 544
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	7 cut(s)	650, 764, 805, 817, 886, 976, 1004
AluI	AGCT	7 cut(s)	650, 764, 805, 817, 886, 976, 1004
Alw21I	GWGCWC	2 cut(s)	447, 484
Alw26I	GTCTC	3 cut(s)	48, 311, 914
AlwI	GGATC	4 cut(s)	191, 294, 307, 509
AlwNI	CAGNNNCTG	2 cut(s)	545, 764
ApeKI	GCWGC	3 cut(s)	47, 725, 764
ApoI	RAATTY	1 cut(s)	257
ArsI	GACNNNNNNTTYG	6 cut(s)	146, 178, 422, 454, 1014, 1046
AseI	ATTAAT	1 cut(s)	788
Asp718I	GGTACC	1 cut(s)	734
AsuHPI	GGTGA	4 cut(s)	3, 122, 178, 281
BamHI	GGATCC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	734
Bbv12I	GWGCWC	2 cut(s)	447, 484
BbvI	GCAGC	3 cut(s)	34, 737, 751
BccI	CCATC	3 cut(s)	101, 441, 724
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	2 cut(s)	207, 546
BcoDI	GTCTC	3 cut(s)	48, 311, 914
BfaI	CTAG	2 cut(s)	581, 677
BfmI	CTRYAG	1 cut(s)	765
BfrI	CTTAAG	1 cut(s)	800
BisI	GCNGC	3 cut(s)	48, 726, 765
BlsI	GCNGC	3 cut(s)	49, 727, 766
BmcAI	AGTACT	2 cut(s)	527, 640
Bme1390I	CCNGG	2 cut(s)	207, 546
BmiI	GGNNCC	2 cut(s)	301, 736
BmrFI	CCNGG	2 cut(s)	207, 546
BmrI	ACTGGG	1 cut(s)	249
BmsI	GCATC	1 cut(s)	921
BmuI	ACTGGG	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	869
Bpu10I	CCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	1 cut(s)	73
Bsa29I	ATCGAT	1 cut(s)	1050
BsaJI	CCNNGG	2 cut(s)	206, 738
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 240, 476, 652, 791
Bse1I	ACTGG	2 cut(s)	244, 852
BseBI	CCWGG	2 cut(s)	207, 546
BseCI	ATCGAT	1 cut(s)	1050
BseDI	CCNNGG	2 cut(s)	206, 738
BseGI	GGATG	1 cut(s)	664
BseLI	CCNNNNNNNGG	5 cut(s)	31, 240, 476, 652, 791
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	2 cut(s)	244, 852
BseXI	GCAGC	3 cut(s)	34, 737, 751
BseYI	CCCAGC	2 cut(s)	497, 646
BsgI	GTGCAG	1 cut(s)	696
BshNI	GGYRCC	1 cut(s)	734
BshVI	ATCGAT	1 cut(s)	1050
BsiHKAI	GWGCWC	2 cut(s)	447, 484
BslI	CCNNNNNNNGG	5 cut(s)	31, 240, 476, 652, 791
BsmAI	GTCTC	3 cut(s)	48, 311, 914
BsmBI	CGTCTC	1 cut(s)	914
Bsp1286I	GDGCHC	2 cut(s)	447, 484
Bsp143I	GATC	5 cut(s)	183, 271, 299, 501, 1047
Bsp19I	CCATGG	1 cut(s)	738
BspACI	CCGC	1 cut(s)	448
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	1050
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	301, 736
BspMAI	CTGCAG	1 cut(s)	769
BspPI	GGATC	4 cut(s)	191, 294, 307, 509
BspT107I	GGYRCC	1 cut(s)	734
BspTI	CTTAAG	1 cut(s)	800
BsrI	ACTGG	2 cut(s)	244, 852
BssECI	CCNNGG	2 cut(s)	206, 738
BssMI	GATC	5 cut(s)	183, 271, 299, 501, 1047
BssT1I	CCWWGG	1 cut(s)	738
Bst2UI	CCWGG	2 cut(s)	207, 546
Bst4CI	ACNGT	4 cut(s)	508, 631, 760, 826
Bst6I	CTCTTC	1 cut(s)	64
BstAFI	CTTAAG	1 cut(s)	800
BstAPI	GCANNNNNTGC	2 cut(s)	773, 931
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	3 cut(s)	27, 651, 1071
BstDSI	CCRYGG	1 cut(s)	738
BstF5I	GGATG	1 cut(s)	664
BstKTI	GATC	5 cut(s)	186, 274, 302, 504, 1050
BstMAI	GTCTC	3 cut(s)	48, 311, 914
BstMBI	GATC	5 cut(s)	183, 271, 299, 501, 1047
BstMWI	GCNNNNNNNGC	4 cut(s)	550, 773, 841, 931
BstNI	CCWGG	2 cut(s)	207, 546
BstNSI	RCATGY	1 cut(s)	315
BstSCI	CCNGG	2 cut(s)	205, 544
BstSFI	CTRYAG	1 cut(s)	765
BstV1I	GCAGC	3 cut(s)	34, 737, 751
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
Bsu15I	ATCGAT	1 cut(s)	1050
BsuTUI	ATCGAT	1 cut(s)	1050
BtgI	CCRYGG	1 cut(s)	738
BtgZI	GCGATG	2 cut(s)	419, 743
BtsCI	GGATG	1 cut(s)	664
BtsIMutI	CAGTG	2 cut(s)	504, 845
Cac8I	GCNNGC	1 cut(s)	326
CaiI	CAGNNNCTG	2 cut(s)	545, 764
CciI	TCATGA	1 cut(s)	382
ClaI	ATCGAT	1 cut(s)	1050
CseI	GACGC	1 cut(s)	931
Csp6I	GTAC	4 cut(s)	203, 526, 639, 735
CspCI	CAANNNNNGTGG	2 cut(s)	834, 869
CviAII	CATG	6 cut(s)	212, 312, 383, 535, 739, 773
CviQI	GTAC	4 cut(s)	203, 526, 639, 735
DdeI	CTNAG	3 cut(s)	27, 651, 1071
DpnI	GATC	5 cut(s)	185, 273, 301, 503, 1049
DpnII	GATC	5 cut(s)	183, 271, 299, 501, 1047
DraI	TTTAAA	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	738
EcoRII	CCWGG	2 cut(s)	205, 544
EcoT14I	CCWWGG	1 cut(s)	738
ErhI	CCWWGG	1 cut(s)	738
Esp3I	CGTCTC	1 cut(s)	914
FaeI	CATG	6 cut(s)	215, 315, 386, 538, 742, 776
FatI	CATG	6 cut(s)	211, 311, 382, 534, 738, 772
FblI	GTMKAC	1 cut(s)	796
Fnu4HI	GCNGC	3 cut(s)	48, 726, 765
FokI	GGATG	1 cut(s)	671
Fsp4HI	GCNGC	3 cut(s)	48, 726, 765
FspBI	CTAG	2 cut(s)	581, 677
GluI	GCNGC	3 cut(s)	48, 726, 765
GsaI	CCCAGC	2 cut(s)	501, 650
GsuI	CTGGAG	1 cut(s)	869
HgaI	GACGC	1 cut(s)	931
Hin1II	CATG	6 cut(s)	215, 315, 386, 538, 742, 776
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	3 cut(s)	56, 473, 686
HphI	GGTGA	4 cut(s)	3, 122, 178, 281
Hpy166II	GTNNAC	3 cut(s)	430, 578, 797
Hpy188I	TCNGA	5 cut(s)	30, 154, 415, 967, 1027
Hpy188III	TCNNGA	4 cut(s)	90, 169, 383, 455
Hpy8I	GTNNAC	3 cut(s)	430, 578, 797
HpyAV	CCTTC	5 cut(s)	25, 87, 260, 616, 715
HpyCH4III	ACNGT	4 cut(s)	508, 631, 760, 826
HpyCH4V	TGCA	4 cut(s)	160, 306, 713, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	550, 773, 841, 931
HpyF3I	CTNAG	3 cut(s)	27, 651, 1071
Hsp92II	CATG	6 cut(s)	215, 315, 386, 538, 742, 776
KpnI	GGTACC	1 cut(s)	738
Kzo9I	GATC	5 cut(s)	183, 271, 299, 501, 1047
LmnI	GCTCC	3 cut(s)	450, 487, 787
Lsp1109I	GCAGC	3 cut(s)	34, 737, 751
LweI	GCATC	1 cut(s)	921
MaeI	CTAG	2 cut(s)	581, 677
MaeIII	GTNAC	7 cut(s)	66, 115, 229, 250, 625, 820, 899
MalI	GATC	5 cut(s)	185, 273, 301, 503, 1049
MboI	GATC	5 cut(s)	183, 271, 299, 501, 1047
MboII	GAAGA	2 cut(s)	29, 51
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	2 cut(s)	447, 484
MluCI	AATT	5 cut(s)	257, 600, 750, 789, 978
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	7 cut(s)	36, 140, 649, 655, 873, 902, 973
MseI	TTAA	6 cut(s)	261, 669, 788, 801, 981, 996
MslI	CAYNNNNRTG	3 cut(s)	381, 490, 1004
MspCI	CTTAAG	1 cut(s)	800
MspR9I	CCNGG	2 cut(s)	207, 546
MvaI	CCWGG	2 cut(s)	207, 546
MwoI	GCNNNNNNNGC	4 cut(s)	550, 773, 841, 931
NcoI	CCATGG	1 cut(s)	738
NdeII	GATC	5 cut(s)	183, 271, 299, 501, 1047
NlaIII	CATG	6 cut(s)	215, 315, 386, 538, 742, 776
NlaIV	GGNNCC	2 cut(s)	301, 736
NmuCI	GTSAC	4 cut(s)	66, 229, 250, 899
NspI	RCATGY	1 cut(s)	315
PagI	TCATGA	1 cut(s)	382
PciI	ACATGT	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	473, 686
PflFI	GACNNNGTC	1 cut(s)	582
PflMI	CCANNNNNTGG	1 cut(s)	791
PkrI	GCNGC	3 cut(s)	49, 727, 766
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PscI	ACATGT	1 cut(s)	311
PshBI	ATTAAT	1 cut(s)	788
Psp6I	CCWGG	2 cut(s)	205, 544
PspFI	CCCAGC	2 cut(s)	497, 646
PspGI	CCWGG	2 cut(s)	205, 544
PspN4I	GGNNCC	2 cut(s)	301, 736
PsrI	GAACNNNNNNTAC	2 cut(s)	753, 785
PstI	CTGCAG	1 cut(s)	769
PstNI	CAGNNNCTG	2 cut(s)	545, 764
PsuI	RGATCY	1 cut(s)	299
PsyI	GACNNNGTC	1 cut(s)	582
RsaI	GTAC	4 cut(s)	204, 527, 640, 736
RsaNI	GTAC	4 cut(s)	203, 526, 639, 735
RseI	CAYNNNNRTG	3 cut(s)	381, 490, 1004
SaqAI	TTAA	6 cut(s)	261, 669, 788, 801, 981, 996
SatI	GCNGC	3 cut(s)	48, 726, 765
Sau3AI	GATC	5 cut(s)	183, 271, 299, 501, 1047
ScaI	AGTACT	2 cut(s)	527, 640
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	207, 546
SduI	GDGCHC	2 cut(s)	447, 484
SfaNI	GCATC	1 cut(s)	921
SfcI	CTRYAG	1 cut(s)	765
SmiMI	CAYNNNNRTG	3 cut(s)	381, 490, 1004
SmlI	CTYRAG	2 cut(s)	88, 800
SmoI	CTYRAG	2 cut(s)	88, 800
Sse9I	AATT	5 cut(s)	257, 600, 750, 789, 978
SsiI	CCGC	1 cut(s)	448
SspI	AATATT	1 cut(s)	958
SspMI	CTAG	2 cut(s)	581, 677
StyD4I	CCNGG	2 cut(s)	205, 544
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	4 cut(s)	508, 631, 760, 826
TaqI	TCGA	2 cut(s)	972, 1050
TasI	AATT	5 cut(s)	257, 600, 750, 789, 978
TatI	WGTACW	2 cut(s)	525, 638
TfiI	GAWTC	2 cut(s)	473, 686
Tru1I	TTAA	6 cut(s)	261, 669, 788, 801, 981, 996
Tru9I	TTAA	6 cut(s)	261, 669, 788, 801, 981, 996
TscAI	CASTG	2 cut(s)	511, 852
TseFI	GTSAC	4 cut(s)	66, 229, 250, 899
TseI	GCWGC	3 cut(s)	47, 725, 764
Tsp45I	GTSAC	4 cut(s)	66, 229, 250, 899
TspDTI	ATGAA	4 cut(s)	71, 228, 536, 761
TspRI	CASTG	2 cut(s)	511, 852
Tth111I	GACNNNGTC	1 cut(s)	582
Van91I	CCANNNNNTGG	1 cut(s)	791
Vha464I	CTTAAG	1 cut(s)	800
VspI	ATTAAT	1 cut(s)	788
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	315
XmiI	GTMKAC	1 cut(s)	796
XspI	CTAG	2 cut(s)	581, 677
ZrmI	AGTACT	2 cut(s)	527, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.