Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004559

Physical Location & Seq

Genomic Coordinates Forward (+)

26361534 .. 26367298

Gene Structure 5765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1183600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCAAAATCACCAGAAGAAGAACACCCACAGAAGGCTTTTGGGTGGGCTGCCAGAGACTCTTCTGGAATACTTTCACCATTTCGTTTCTCCAGAAGGGAAAATGCTGATGATGATGTAACAATCAAGGTCCTCTTCTGTGGGGTCTGCCATTCAGACTTACATTCTGCCAAGAACGAATGGGGTTTCACCAACTTCCCTGTTGTGCCGGGGCATGAAATTGTTGGTGTTGTGACCCATACTGGGAACAATGTGGAGAAATTCAAAGTAGGAGATCGTGTAGGAGTTGGGGTCATAGTGGGTTCCTGCATGAAATGTGATACTTGCCAAGAGGACTTGGAGAATTATTGCCCTCAAGTAATATACACCTATAACTCACACCATCATGACCATGACCGAACAAAAACTTATGGTGGTTATTCTGATATGATTGTTGTTCACCATCGCTATGTGCTCCGCTTTCCTGATAACTTACCCCCTGATGCGGGTGCACCACTTTTATGTGCTGGGATCACTGCGTACAGTCCAATGAAATATTATGGAATGACCGAGCCCGGAAAGCATTTGGGTGTGGCGGGACTTGGCGGGCTTGGTCACATCACTGTGAAGATTGGTAAGGCATTTGGTTTGAAAGTGACTGTCATCAGTTCCTCCCCAGCAAAGGAGGATGAGGCAATTAAGACACTTGGGGCTGATTCTTTTCTTCTTTTAAGTGACCCTGCCAAATTGAAGGAAGCAATGGGTAGCATGGATTATATCATTGACACAGTGTCTGCAGTTCATGCCCTGGCTCCATTAATCGGTCTACTGAAGCTGAACGGGAAGCTGGTCACCGTGGGTTTGCCTGACAAGCCCCTGGAATTGCCTATCTTCCCTTTAGTTTTGGGGCGGAAGCTTGTAGGGGGAAGTGACATAGGAGGGATGAAAGAGACGCAGGAGATGCTTGACTTTTGTGCCAAGCACAACATAACCTCAGACATCGAGCTGATTCGAATGGATTACATTAATACAGCAATGGAACGACTTGCCAAATCGGATGTCAGGTATCGGTTTGTGATCGATGTGGCAAACTCCCTGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009735 GO:0009808 GO:0009809 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0045551 GO:0048046 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

361

Amino Acids

39.29

Weight (kDa)

6.2

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	37 - 156	4.5e-26	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	196 - 319	1.5e-19	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21730 AT2G21890 AT4G39330 AT4G39330
fragaria_vesca	FvH4_1g23790 FvH4_1g23790 FvH4_1g23810
malus_domestica	MD07G1183600.v1.1 MD13G1280800.v1.1
prunus_persica	Prupe.6G161800_v2.0.a1 Prupe.6G162000_v2.0.a1 Prupe.6G162000_v2.0.a1
pyrus_communis	pycom15g30090
rosa_chinensis	RchiOBHm_Chr2g0119681 RchiOBHm_Chr2g0119731
rosa_laevigata	RLG00000018484 RLG00000018488
rosa_multiflora	Rmu_sc0001501.1_g000063 Rmu_sc0001501.1_g000064 Rmu_sc0001501.1_g000065 Rmu_sc0001501.1_g000091 Rmu_sc0018654.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124130 Rroxscaffold_2G00124200
rosa_rugosa	Rorug02G0222900 Rorug02G0223200
rosa_samantha	Rh2BG292100 Rh2BG292400
rosa_wichuraiana	Rw0G003780 Rw2G022420 Rw2G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	805
AciI	CCGC	5 cut(s)	457, 485, 575, 585, 889
AclWI	GGATC	1 cut(s)	518
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	830
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	6 cut(s)	34, 243, 484, 485, 661, 800
AgsI	TTSAA	3 cut(s)	265, 631, 730
AhdI	GACNNNNNGTC	1 cut(s)	769
AjnI	CCWGG	2 cut(s)	786, 855
AluBI	AGCT	4 cut(s)	814, 826, 895, 985
AluI	AGCT	4 cut(s)	814, 826, 895, 985
Alw21I	GWGCWC	2 cut(s)	456, 493
Alw26I	GTCTC	2 cut(s)	51, 923
Alw44I	GTGCAC	1 cut(s)	489
AlwI	GGATC	1 cut(s)	518
AlwNI	CAGNNNCTG	1 cut(s)	773
ApaLI	GTGCAC	1 cut(s)	489
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	260
ArsI	GACNNNNNNTTYG	2 cut(s)	1023, 1055
AseI	ATTAAT	2 cut(s)	797, 1005
Asp700I	GAANNNNTTC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	130
AsuC2I	CCSGG	2 cut(s)	210, 555
AsuHPI	GGTGA	5 cut(s)	3, 69, 181, 431, 823
AsuII	TTCGAA	1 cut(s)	991
AvaII	GGWCC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	555
Bbv12I	GWGCWC	2 cut(s)	456, 493
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	2 cut(s)	390, 450
BciT130I	CCWGG	2 cut(s)	788, 857
BcnI	CCSGG	2 cut(s)	210, 555
BcoDI	GTCTC	2 cut(s)	51, 923
BfmI	CTRYAG	1 cut(s)	774
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	4 cut(s)	210, 555, 788, 857
Bme18I	GGWCC	1 cut(s)	130
BmeRI	GACNNNNNGTC	1 cut(s)	769
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	304, 792
BmrFI	CCNGG	4 cut(s)	210, 555, 788, 857
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	472, 930
BmuI	ACTGGG	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	76
Bpu14I	TTCGAA	1 cut(s)	991
BpuEI	CTTGAG	1 cut(s)	339
BpuMI	CCSGG	2 cut(s)	210, 555
Bsa29I	ATCGAT	1 cut(s)	1059
BsaJI	CCNNGG	4 cut(s)	209, 786, 834, 855
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 276, 294, 306
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 243, 484, 485, 661, 800
Bse1I	ACTGG	1 cut(s)	247
Bse3DI	GCAATG	2 cut(s)	744, 1020
BseBI	CCWGG	2 cut(s)	788, 857
BseCI	ATCGAT	1 cut(s)	1059
BseDI	CCNNGG	4 cut(s)	209, 786, 834, 855
BseGI	GGATG	3 cut(s)	673, 927, 1042
BseLI	CCNNNNNNNGG	6 cut(s)	34, 243, 484, 485, 661, 800
BseMI	GCAATG	2 cut(s)	744, 1020
BseMII	CTCAG	1 cut(s)	987
BseNI	ACTGG	1 cut(s)	247
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	1 cut(s)	37
BseYI	CCCAGC	2 cut(s)	506, 655
BshVI	ATCGAT	1 cut(s)	1059
BsiHKAI	GWGCWC	2 cut(s)	456, 493
BsiSI	CCGG	2 cut(s)	209, 555
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	6 cut(s)	34, 243, 484, 485, 661, 800
BsmAI	GTCTC	2 cut(s)	51, 923
BsmBI	CGTCTC	1 cut(s)	923
BsmFI	GGGAC	1 cut(s)	591
Bsp119I	TTCGAA	1 cut(s)	991
Bsp1286I	GDGCHC	3 cut(s)	456, 493, 555
Bsp143I	GATC	3 cut(s)	274, 510, 1056
BspACI	CCGC	5 cut(s)	457, 485, 575, 585, 889
BspCNI	CTCAG	1 cut(s)	986
BspDI	ATCGAT	1 cut(s)	1059
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	304, 792
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	1 cut(s)	518
BspT104I	TTCGAA	1 cut(s)	991
BsrDI	GCAATG	2 cut(s)	744, 1020
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	4 cut(s)	209, 786, 834, 855
BssMI	GATC	3 cut(s)	274, 510, 1056
Bst2UI	CCWGG	2 cut(s)	788, 857
Bst4CI	ACNGT	5 cut(s)	524, 604, 640, 769, 835
Bst6I	CTCTTC	2 cut(s)	67, 140
BstAPI	GCANNNNNTGC	2 cut(s)	782, 940
BstBI	TTCGAA	1 cut(s)	991
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	2 cut(s)	973, 1080
BstDSI	CCRYGG	1 cut(s)	834
BstEII	GGTNACC	1 cut(s)	829
BstF5I	GGATG	3 cut(s)	673, 927, 1042
BstKTI	GATC	3 cut(s)	277, 513, 1059
BstMAI	GTCTC	2 cut(s)	51, 923
BstMBI	GATC	3 cut(s)	274, 510, 1056
BstMWI	GCNNNNNNNGC	4 cut(s)	559, 782, 850, 940
BstNI	CCWGG	2 cut(s)	788, 857
BstPI	GGTNACC	1 cut(s)	829
BstSCI	CCNGG	4 cut(s)	208, 553, 786, 855
BstSFI	CTRYAG	1 cut(s)	774
BstSLI	GKGCMC	1 cut(s)	493
BstV1I	GCAGC	1 cut(s)	37
Bsu15I	ATCGAT	1 cut(s)	1059
BsuTUI	ATCGAT	1 cut(s)	1059
BtgI	CCRYGG	1 cut(s)	834
BtgZI	GCGATG	1 cut(s)	428
BtsCI	GGATG	3 cut(s)	673, 927, 1042
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	3 cut(s)	513, 600, 774
Cac8I	GCNNGC	1 cut(s)	587
CaiI	CAGNNNCTG	1 cut(s)	773
CciI	TCATGA	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	130
ClaI	ATCGAT	1 cut(s)	1059
CseI	GACGC	1 cut(s)	940
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	6 cut(s)	215, 310, 386, 392, 748, 782
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	2 cut(s)	973, 1080
DpnI	GATC	3 cut(s)	276, 512, 1058
DpnII	GATC	3 cut(s)	274, 510, 1056
DriI	GACNNNNNGTC	1 cut(s)	769
Eam1104I	CTCTTC	2 cut(s)	67, 140
Eam1105I	GACNNNNNGTC	1 cut(s)	769
EarI	CTCTTC	2 cut(s)	67, 140
EciI	GGCGGA	1 cut(s)	904
Eco24I	GRGCYC	1 cut(s)	555
Eco47I	GGWCC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	830
Eco91I	GGTNACC	1 cut(s)	829
EcoO109I	RGGNCCY	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	829
EcoRII	CCWGG	2 cut(s)	786, 855
EcoT38I	GRGCYC	1 cut(s)	555
Esp3I	CGTCTC	1 cut(s)	923
FaeI	CATG	6 cut(s)	218, 313, 389, 395, 751, 785
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	6 cut(s)	214, 309, 385, 391, 747, 781
FauI	CCCGC	3 cut(s)	478, 568, 578
FblI	GTMKAC	1 cut(s)	805
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	3 cut(s)	680, 934, 1049
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	2 cut(s)	510, 659
GsuI	CTGGAG	1 cut(s)	76
HapII	CCGG	2 cut(s)	209, 555
HgaI	GACGC	1 cut(s)	940
Hin1II	CATG	6 cut(s)	218, 313, 389, 395, 751, 785
HindIII	AAGCTT	1 cut(s)	893
HinfI	GANTC	3 cut(s)	59, 695, 988
HpaII	CCGG	2 cut(s)	209, 555
HphI	GGTGA	5 cut(s)	3, 69, 181, 431, 823
Hpy166II	GTNNAC	3 cut(s)	439, 491, 806
Hpy188I	TCNGA	4 cut(s)	157, 424, 976, 1036
Hpy188III	TCNNGA	4 cut(s)	66, 93, 386, 464
Hpy8I	GTNNAC	3 cut(s)	439, 491, 806
HpyAV	CCTTC	3 cut(s)	28, 90, 724
HpyCH4III	ACNGT	5 cut(s)	524, 604, 640, 769, 835
HpyCH4V	TGCA	3 cut(s)	309, 491, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	559, 782, 850, 940
HpyF3I	CTNAG	2 cut(s)	973, 1080
Hsp92II	CATG	6 cut(s)	218, 313, 389, 395, 751, 785
Kzo9I	GATC	3 cut(s)	274, 510, 1056
LmnI	GCTCC	2 cut(s)	459, 796
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	2 cut(s)	472, 930
MaeIII	GTNAC	7 cut(s)	118, 232, 593, 634, 713, 829, 908
MalI	GATC	3 cut(s)	276, 512, 1058
MboI	GATC	3 cut(s)	274, 510, 1056
MboII	GAAGA	7 cut(s)	29, 32, 54, 127, 619, 695, 862
MhlI	GDGCHC	3 cut(s)	456, 493, 555
MluCI	AATT	6 cut(s)	219, 260, 343, 675, 725, 860
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	8 cut(s)	143, 325, 363, 658, 661, 664, 911, 982
MroXI	GAANNNNTTC	1 cut(s)	73
MseI	TTAA	4 cut(s)	678, 710, 797, 1005
MslI	CAYNNNNRTG	6 cut(s)	384, 390, 447, 499, 567, 602
MspI	CCGG	2 cut(s)	209, 555
MspR9I	CCNGG	4 cut(s)	210, 555, 788, 857
MvaI	CCWGG	2 cut(s)	788, 857
MwoI	GCNNNNNNNGC	4 cut(s)	559, 782, 850, 940
NciI	CCSGG	2 cut(s)	210, 555
NdeII	GATC	3 cut(s)	274, 510, 1056
NlaIII	CATG	6 cut(s)	218, 313, 389, 395, 751, 785
NlaIV	GGNNCC	2 cut(s)	304, 792
NmuCI	GTSAC	6 cut(s)	232, 593, 634, 713, 829, 908
NspV	TTCGAA	1 cut(s)	991
PagI	TCATGA	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	695, 988
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	130
PshBI	ATTAAT	2 cut(s)	797, 1005
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	786, 855
PspEI	GGTNACC	1 cut(s)	829
PspFI	CCCAGC	2 cut(s)	506, 655
PspGI	CCWGG	2 cut(s)	786, 855
PspN4I	GGNNCC	2 cut(s)	304, 792
PspPI	GGNCC	1 cut(s)	130
PspPPI	RGGWCCY	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	773
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	6 cut(s)	384, 390, 447, 499, 567, 602
SaqAI	TTAA	4 cut(s)	678, 710, 797, 1005
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	3 cut(s)	274, 510, 1056
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	4 cut(s)	210, 555, 788, 857
SduI	GDGCHC	3 cut(s)	456, 493, 555
SetI	ASST	8 cut(s)	132, 371, 816, 828, 897, 974, 987, 1046
SfaNI	GCATC	2 cut(s)	472, 930
SfcI	CTRYAG	1 cut(s)	774
SfuI	TTCGAA	1 cut(s)	991
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	6 cut(s)	384, 390, 447, 499, 567, 602
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	6 cut(s)	219, 260, 343, 675, 725, 860
SsiI	CCGC	5 cut(s)	457, 485, 575, 585, 889
SspI	AATATT	1 cut(s)	536
StyD4I	CCNGG	4 cut(s)	208, 553, 786, 855
TaaI	ACNGT	5 cut(s)	524, 604, 640, 769, 835
TaqI	TCGA	3 cut(s)	981, 991, 1059
TaqII	GACCGA	3 cut(s)	411, 563, 791
TasI	AATT	6 cut(s)	219, 260, 343, 675, 725, 860
TfiI	GAWTC	2 cut(s)	695, 988
Tru1I	TTAA	4 cut(s)	678, 710, 797, 1005
Tru9I	TTAA	4 cut(s)	678, 710, 797, 1005
TscAI	CASTG	3 cut(s)	520, 607, 774
TseFI	GTSAC	6 cut(s)	232, 593, 634, 713, 829, 908
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	6 cut(s)	232, 593, 634, 713, 829, 908
TspDTI	ATGAA	5 cut(s)	231, 326, 545, 770, 938
TspRI	CASTG	3 cut(s)	520, 607, 774
VneI	GTGCAC	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	130
VspI	ATTAAT	2 cut(s)	797, 1005
XapI	RAATTY	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	805
XmnI	GAANNNNTTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.