Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004559

Physical Location & Seq

Genomic Coordinates Forward (+)

18291218 .. 18293018

Gene Structure 1801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCGAAATCTCCAGAAACAGAGCATCCGAACAAAGTCTTTGGTTGGGGTGCTAGAGACAAATCCGGTGTTCTCTCTCCTTTTCACTTCTCTAGAAGAGACAATGGTGAAAATGATGTGACAGTGAAGATCTTGTTCTGTGGAGTTTGCCACACTGATTTACACACCATCAAAAACGACTGGGGATACTCGTATTACCCAGTAGTTCCAGGGCATGAAATCGTTGGGATCGCTACAAAAGTTGGTAAGAACGTGACTAAATTCAAAGAAGGAGATCGTGTCGGAGTAGGAGTGATCAGTGGCTCGTGCCAATCTTGCGAATCTTGTGACCAAGATCTTGAAAACTACTGTCCTCAAATGTCTTTCACATACAATGCGATTGGATCCGATGGAACCAAGAATTACGGTGGCTATTCGGAGAACATTGTGGTTGATCAACGGTTTGTTTTGCGGTTTCCGGAGAATTTACCGAGCGATTCGGGTGCGCCGTTGCTGTGTGCTGGAATCACTGTGTATAGTCCAATGAAGTATTATGGTATGACTGAGGCAGGGAAGCATTTAGGGGTTGCTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGATTGGTAAAGCTTTTGGTTTGAAAGTTACTGTCATTAGTTCTTCTTCTACGAAAGCAGAGGAAGCCATTAATCATCTTGGTGCTGATTCGTTTCTTGTCACAACTGATCCTCAGAAAATGAAGGCTGCAATTGGAACAATGGACTACATTATCGATACGATATCAGCAGTACATGCTCTGTATCCGTTGCTCGGTTTACTCAAAGTCAACGGAAAGCTCATTGCTTTAGGCTTACCTGAGAAGCCTCTCGAGCTACCAATGTTCCCTCTTGTTCTCGGAAGGAAAATGGTTGGAGGAAGTGACGTGGGAGGGATGAAGGAGACACAAGAGATGCTTGATTTCTGCGCTAAGCACAACATTACAGCTGATATTGAATTGATTAAGATGGATGAGATTAACACTGCGATGGAGAGGCTTGCTAAGTCTGATGTTAGGTACAGGTTCGTGATCGACGTGGCTAACTCCTTGAGCCCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009735 GO:0009808 GO:0009809 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0045551 GO:0048046 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

360

Amino Acids

38.93

Weight (kDa)

6.21

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	36 - 153	3.7e-26	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	194 - 303	5.1e-16	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21730 AT2G21890 AT4G39330 AT4G39330
fragaria_vesca	FvH4_1g23790 FvH4_1g23790 FvH4_1g23810
malus_domestica	MD07G1183600.v1.1 MD13G1280800.v1.1
prunus_persica	Prupe.6G161800_v2.0.a1 Prupe.6G162000_v2.0.a1 Prupe.6G162000_v2.0.a1
pyrus_communis	pycom15g30090
rosa_chinensis	RchiOBHm_Chr2g0119681 RchiOBHm_Chr2g0119731
rosa_laevigata	RLG00000018484 RLG00000018488
rosa_multiflora	Rmu_sc0001501.1_g000063 Rmu_sc0001501.1_g000064 Rmu_sc0001501.1_g000065 Rmu_sc0001501.1_g000091 Rmu_sc0018654.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124130 Rroxscaffold_2G00124200
rosa_rugosa	Rorug02G0222900 Rorug02G0223200
rosa_samantha	Rh2BG292100 Rh2BG292400
rosa_wichuraiana	Rw0G003780 Rw2G022420 Rw2G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	457
AciI	CCGC	1 cut(s)	451
AclWI	GGATC	4 cut(s)	236, 378, 391, 704
AcsI	RAATTY	2 cut(s)	260, 463
AfaI	GTAC	2 cut(s)	774, 1040
AfiI	CCNNNNNNNGG	1 cut(s)	794
AgsI	TTSAA	4 cut(s)	265, 341, 625, 977
AjiI	CACGTC	2 cut(s)	907, 1057
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	4 cut(s)	614, 820, 856, 968
AluI	AGCT	4 cut(s)	614, 820, 856, 968
Alw26I	GTCTC	3 cut(s)	51, 93, 917
AlwI	GGATC	4 cut(s)	236, 378, 391, 704
Ama87I	CYCGRG	1 cut(s)	851
Aor13HI	TCCGGA	1 cut(s)	457
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	2 cut(s)	260, 463
AseI	ATTAAT	1 cut(s)	672
AspLEI	GCGC	2 cut(s)	487, 950
AsuHPI	GGTGA	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	851
BamHI	GGATCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	1076
BauI	CACGAG	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	4 cut(s)	176, 383, 982, 1003
BceAI	ACGGC	1 cut(s)	472
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	1 cut(s)	210
BciVI	GTATCC	2 cut(s)	179, 795
BclI	TGATCA	2 cut(s)	294, 433
BcoDI	GTCTC	3 cut(s)	51, 93, 917
BfaI	CTAG	2 cut(s)	54, 93
BfuI	GTATCC	2 cut(s)	179, 795
BglII	AGATCT	2 cut(s)	129, 334
BisI	GCNGC	1 cut(s)	729
BlpI	GCTNAGC	1 cut(s)	951
BlsI	GCNGC	1 cut(s)	730
Bme1390I	CCNGG	1 cut(s)	210
BmeT110I	CYCGRG	1 cut(s)	851
BmgBI	CACGTC	2 cut(s)	907, 1057
BmiI	GGNNCC	2 cut(s)	385, 394
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	2 cut(s)	190, 194
BmsI	GCATC	2 cut(s)	34, 924
BmuI	ACTGGG	2 cut(s)	190, 194
Bpu1102I	GCTNAGC	1 cut(s)	951
Bsa29I	ATCGAT	1 cut(s)	756
BsaJI	CCNNGG	1 cut(s)	209
BsaWI	WCCGGW	2 cut(s)	65, 457
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 276, 294, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
Bse1I	ACTGG	2 cut(s)	185, 200
Bse3DI	GCAATG	1 cut(s)	822
BseAI	TCCGGA	1 cut(s)	457
BseBI	CCWGG	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	756
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	3 cut(s)	25, 921, 997
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	3 cut(s)	534, 728, 831
BseNI	ACTGG	2 cut(s)	185, 200
BseXI	GCAGC	1 cut(s)	715
BshVI	ATCGAT	1 cut(s)	756
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	2 cut(s)	66, 458
BslI	CCNNNNNNNGG	1 cut(s)	794
BsmAI	GTCTC	3 cut(s)	51, 93, 917
BsoBI	CYCGRG	1 cut(s)	851
Bsp1286I	GDGCHC	1 cut(s)	1076
Bsp13I	TCCGGA	1 cut(s)	457
Bsp143I	GATC	9 cut(s)	129, 228, 274, 294, 334, 383, 433, 709, 1050
Bsp1720I	GCTNAGC	1 cut(s)	951
BspACI	CCGC	1 cut(s)	451
BspCNI	CTCAG	3 cut(s)	535, 727, 832
BspDI	ATCGAT	1 cut(s)	756
BspEI	TCCGGA	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	385, 394
BspPI	GGATC	4 cut(s)	236, 378, 391, 704
BsrDI	GCAATG	1 cut(s)	822
BsrI	ACTGG	2 cut(s)	185, 200
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	9 cut(s)	129, 228, 274, 294, 334, 383, 433, 709, 1050
BssSI	CACGAG	1 cut(s)	304
Bst2BI	CACGAG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	6 cut(s)	124, 350, 407, 441, 511, 634
Bst6I	CTCTTC	1 cut(s)	91
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstC8I	GCNNGC	1 cut(s)	1020
BstDEI	CTNAG	5 cut(s)	543, 714, 840, 951, 1023
BstF5I	GGATG	3 cut(s)	25, 921, 997
BstHHI	GCGC	2 cut(s)	487, 950
BstKTI	GATC	9 cut(s)	132, 231, 277, 297, 337, 386, 436, 712, 1053
BstMAI	GTCTC	3 cut(s)	51, 93, 917
BstMBI	GATC	9 cut(s)	129, 228, 274, 294, 334, 383, 433, 709, 1050
BstMWI	GCNNNNNNNGC	4 cut(s)	315, 665, 776, 853
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	779
BstSCI	CCNGG	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	715
BstX2I	RGATCY	3 cut(s)	129, 334, 383
BstYI	RGATCY	3 cut(s)	129, 334, 383
Bsu15I	ATCGAT	1 cut(s)	756
BsuI	GTATCC	2 cut(s)	179, 795
BsuTUI	ATCGAT	1 cut(s)	756
BtgZI	GCGATG	1 cut(s)	1022
BtrI	CACGTC	2 cut(s)	907, 1057
BtsCI	GGATG	3 cut(s)	25, 921, 997
BtsI	GCAGTG	1 cut(s)	1002
BtsIMutI	CAGTG	5 cut(s)	129, 153, 304, 507, 1002
Cac8I	GCNNGC	1 cut(s)	1020
CfoI	GCGC	2 cut(s)	487, 950
ClaI	ATCGAT	1 cut(s)	756
Csp6I	GTAC	2 cut(s)	773, 1039
CviAII	CATG	4 cut(s)	215, 590, 776, 1080
CviQI	GTAC	2 cut(s)	773, 1039
DdeI	CTNAG	5 cut(s)	543, 714, 840, 951, 1023
DpnI	GATC	9 cut(s)	131, 230, 276, 296, 336, 385, 435, 711, 1052
DpnII	GATC	9 cut(s)	129, 228, 274, 294, 334, 383, 433, 709, 1050
Eam1104I	CTCTTC	1 cut(s)	91
EarI	CTCTTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	1076
Eco32I	GATATC	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	851
EcoRII	CCWGG	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	765
EcoT38I	GRGCYC	1 cut(s)	1076
FaeI	CATG	4 cut(s)	218, 593, 779, 1083
FaiI	YATR	8 cut(s)	216, 370, 516, 534, 539, 591, 777, 1081
FalI	AAGNNNNNCTT	2 cut(s)	921, 953
FatI	CATG	4 cut(s)	214, 589, 775, 1079
FbaI	TGATCA	2 cut(s)	294, 433
Fnu4HI	GCNGC	1 cut(s)	729
FokI	GGATG	3 cut(s)	12, 928, 1004
FriOI	GRGCYC	1 cut(s)	1076
Fsp4HI	GCNGC	1 cut(s)	729
FspBI	CTAG	2 cut(s)	54, 93
GlaI	GCGC	2 cut(s)	486, 949
GluI	GCNGC	1 cut(s)	729
HapII	CCGG	2 cut(s)	66, 458
HhaI	GCGC	2 cut(s)	487, 950
Hin1II	CATG	4 cut(s)	218, 593, 779, 1083
Hin6I	GCGC	2 cut(s)	485, 948
HinP1I	GCGC	2 cut(s)	485, 948
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	612
HinfI	GANTC	4 cut(s)	320, 476, 504, 689
HpaII	CCGG	2 cut(s)	66, 458
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	800, 811
Hpy188I	TCNGA	7 cut(s)	30, 284, 388, 418, 717, 881, 1030
Hpy188III	TCNNGA	6 cut(s)	14, 93, 338, 458, 851, 1048
Hpy8I	GTNNAC	2 cut(s)	800, 811
Hpy99I	CGWCG	1 cut(s)	1058
HpyAV	CCTTC	4 cut(s)	263, 718, 876, 913
HpyCH4III	ACNGT	6 cut(s)	124, 350, 407, 441, 511, 634
HpyCH4IV	ACGT	3 cut(s)	252, 906, 1056
HpyCH4V	TGCA	1 cut(s)	731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	315, 665, 776, 853
HpyF3I	CTNAG	5 cut(s)	543, 714, 840, 951, 1023
HpySE526I	ACGT	3 cut(s)	252, 906, 1056
Hsp92II	CATG	4 cut(s)	218, 593, 779, 1083
HspAI	GCGC	2 cut(s)	485, 948
Kpn2I	TCCGGA	1 cut(s)	457
Ksp22I	TGATCA	2 cut(s)	294, 433
Kzo9I	GATC	9 cut(s)	129, 228, 274, 294, 334, 383, 433, 709, 1050
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	2 cut(s)	34, 924
MaeI	CTAG	2 cut(s)	54, 93
MaeII	ACGT	3 cut(s)	252, 906, 1056
MaeIII	GTNAC	6 cut(s)	118, 253, 326, 628, 700, 902
MalI	GATC	9 cut(s)	131, 230, 276, 296, 336, 385, 435, 711, 1052
MboI	GATC	9 cut(s)	129, 228, 274, 294, 334, 383, 433, 709, 1050
MboII	GAAGA	4 cut(s)	108, 139, 636, 639
MfeI	CAATTG	1 cut(s)	732
MflI	RGATCY	3 cut(s)	129, 334, 383
MhlI	GDGCHC	1 cut(s)	1076
MluCI	AATT	5 cut(s)	260, 400, 463, 732, 977
MmeI	TCCRAC	2 cut(s)	262, 874
MnlI	CCTC	9 cut(s)	363, 538, 655, 723, 858, 879, 890, 905, 1008
MroI	TCCGGA	1 cut(s)	457
MseI	TTAA	4 cut(s)	600, 672, 984, 999
MslI	CAYNNNNRTG	2 cut(s)	681, 1007
MspA1I	CMGCKG	1 cut(s)	968
MspI	CCGG	2 cut(s)	66, 458
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	732
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	4 cut(s)	315, 665, 776, 853
NdeII	GATC	9 cut(s)	129, 228, 274, 294, 334, 383, 433, 709, 1050
NlaIII	CATG	4 cut(s)	218, 593, 779, 1083
NlaIV	GGNNCC	2 cut(s)	385, 394
NmuCI	GTSAC	5 cut(s)	118, 253, 326, 700, 902
NspI	RCATGY	1 cut(s)	779
PaeR7I	CTCGAG	1 cut(s)	851
PcsI	WCGNNNNNNNCGW	2 cut(s)	485, 1053
PfeI	GAWTC	4 cut(s)	320, 476, 504, 689
PkrI	GCNGC	1 cut(s)	730
PshBI	ATTAAT	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	385, 394
PsuI	RGATCY	3 cut(s)	129, 334, 383
PvuII	CAGCTG	1 cut(s)	968
RsaI	GTAC	2 cut(s)	774, 1040
RsaNI	GTAC	2 cut(s)	773, 1039
RseI	CAYNNNNRTG	2 cut(s)	681, 1007
SaqAI	TTAA	4 cut(s)	600, 672, 984, 999
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	9 cut(s)	129, 228, 274, 294, 334, 383, 433, 709, 1050
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	1076
SfaNI	GCATC	2 cut(s)	34, 924
Sfr274I	CTCGAG	1 cut(s)	851
SlaI	CTCGAG	1 cut(s)	851
SmiMI	CAYNNNNRTG	2 cut(s)	681, 1007
SmlI	CTYRAG	2 cut(s)	851, 1069
SmoI	CTYRAG	2 cut(s)	851, 1069
Sse9I	AATT	5 cut(s)	260, 400, 463, 732, 977
SsiI	CCGC	1 cut(s)	451
SspMI	CTAG	2 cut(s)	54, 93
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	6 cut(s)	124, 350, 407, 441, 511, 634
TaiI	ACGT	3 cut(s)	255, 909, 1059
TaqI	TCGA	3 cut(s)	756, 852, 1053
TasI	AATT	5 cut(s)	260, 400, 463, 732, 977
TatI	WGTACW	1 cut(s)	772
TfiI	GAWTC	4 cut(s)	320, 476, 504, 689
Tru1I	TTAA	4 cut(s)	600, 672, 984, 999
Tru9I	TTAA	4 cut(s)	600, 672, 984, 999
TscAI	CASTG	5 cut(s)	129, 160, 304, 514, 1009
TseFI	GTSAC	5 cut(s)	118, 253, 326, 700, 902
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	5 cut(s)	118, 253, 326, 700, 902
TspDTI	ATGAA	4 cut(s)	231, 539, 737, 932
TspGWI	ACGGA	2 cut(s)	777, 828
TspRI	CASTG	5 cut(s)	129, 160, 304, 514, 1009
VspI	ATTAAT	1 cut(s)	672
XapI	RAATTY	2 cut(s)	260, 463
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	1 cut(s)	779
XhoI	CTCGAG	1 cut(s)	851
XspI	CTAG	2 cut(s)	54, 93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.