Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001501.1

Orthogroup ID

OG0004559

Physical Location & Seq

Genomic Coordinates Reverse (-)

371713 .. 373743

Gene Structure 2031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001501.1_g000091.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgtgggggaggactccccttgtggccatggaaaatgctgatggtgatgtaacaataaaagtcctgtattgtggggtttgccattcagacctgcattctgtcaagaacgattgggggttcaccaactatcctattgtacctgggcatgaaattgttggtgttgtgaccaaaactgggaaaagtgtgacgaaattcaaagaaggtgatcgtgtaggagttggtgttatggtgggatcctgcaacacatgtgagacttgccagcaggacttggagaactattgccccaaagtgatattcacatataactcccacaatcatgacaaaactaaaacttatggtggttattctgatatgattgttgttgaccatcgctttgtgctccgctttcccgataacttacccccagattctggcgctccacttctatgtgccgggatcactgtgtatagtccaatgaagtattacggcatgacagagcctggaaagcatttgggcgtggcaggactaggtggactaggtcatattgctgtcaaaattggtaaggcttttggtttgaaggtaactgtcatcagtacttccccagctaaggaggatgaggctattaacagacttggggctgattcttttgttgtttcaactgacccggcacaattgaaggcagcgatgggtaccatggattacataattgacacagtagctgcagttcatgcccttgctccattaattggtctacttaagctgaatgggaagctggttactgtgggtttgcctaataagccactggagttgcctatatttccattggttctggggaggaagctcgttggtggaagcgacgttggagggataaaagagacgcaggagatgcttgacttttgtgccaaacacaatattacctccgaaatcgagctaattaaaatggactacattaacacagctatggagcgacttgccaaatcagatgtcaggtatcggtttgtgatcgatgtggggaactcctcgtctcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009735 GO:0009808 GO:0009809 GO:0009987 GO:0010033 GO:0016491 GO:0016614 GO:0016616 GO:0019438 GO:0019748 GO:0042221 GO:0044237 GO:0044249 GO:0044550 GO:0045551 GO:0048046 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

336

Amino Acids

36.28

Weight (kDa)

6.55

Isoelectric Point (pI)

21.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21730 AT2G21890 AT4G39330 AT4G39330
fragaria_vesca	FvH4_1g23790 FvH4_1g23790 FvH4_1g23810
malus_domestica	MD07G1183600.v1.1 MD13G1280800.v1.1
prunus_persica	Prupe.6G161800_v2.0.a1 Prupe.6G162000_v2.0.a1 Prupe.6G162000_v2.0.a1
pyrus_communis	pycom15g30090
rosa_chinensis	RchiOBHm_Chr2g0119681 RchiOBHm_Chr2g0119731
rosa_laevigata	RLG00000018484 RLG00000018488
rosa_multiflora	Rmu_sc0001501.1_g000063 Rmu_sc0001501.1_g000064 Rmu_sc0001501.1_g000065 Rmu_sc0001501.1_g000091 Rmu_sc0018654.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124130 Rroxscaffold_2G00124200
rosa_rugosa	Rorug02G0222900 Rorug02G0223200
rosa_samantha	Rh2BG292100 Rh2BG292400
rosa_wichuraiana	Rw0G003780 Rw2G022420 Rw2G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	99
Acc65I	GGTACC	1 cut(s)	668
AccB1I	GGYRCC	1 cut(s)	668
AccB7I	CCANNNNNTGG	2 cut(s)	410, 725
AccI	GTMKAC	1 cut(s)	730
AciI	CCGC	1 cut(s)	382
AclWI	GGATC	3 cut(s)	228, 241, 443
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	3 cut(s)	138, 574, 670
AfiI	CCNNNNNNNGG	4 cut(s)	174, 410, 586, 725
AflII	CTTAAG	1 cut(s)	734
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	4 cut(s)	196, 556, 636, 655
AjnI	CCWGG	2 cut(s)	139, 478
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	7 cut(s)	584, 698, 739, 751, 820, 910, 938
AluI	AGCT	7 cut(s)	584, 698, 739, 751, 820, 910, 938
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	245, 848
AlwI	GGATC	3 cut(s)	228, 241, 443
AlwNI	CAGNNNCTG	3 cut(s)	410, 479, 698
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	2 cut(s)	659, 698
ApoI	RAATTY	1 cut(s)	191
ArsI	GACNNNNNNTTYG	4 cut(s)	356, 388, 948, 980
AseI	ATTAAT	1 cut(s)	722
Asp718I	GGTACC	1 cut(s)	668
AspLEI	GCGC	1 cut(s)	416
AsuC2I	CCSGG	2 cut(s)	433, 644
AsuHPI	GGTGA	3 cut(s)	56, 112, 215
BalI	TGGCCA	1 cut(s)	26
BamHI	GGATCC	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	671, 685
BccI	CCATC	3 cut(s)	35, 375, 658
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	2 cut(s)	141, 480
BcnI	CCSGG	2 cut(s)	433, 644
BcoDI	GTCTC	2 cut(s)	245, 848
BfaI	CTAG	2 cut(s)	506, 515
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	417
BfrI	CTTAAG	1 cut(s)	734
BfuAI	ACCTGC	1 cut(s)	99
BisI	GCNGC	2 cut(s)	660, 699
BlsI	GCNGC	2 cut(s)	661, 700
BmcAI	AGTACT	1 cut(s)	574
Bme1390I	CCNGG	4 cut(s)	141, 433, 480, 644
BmiI	GGNNCC	2 cut(s)	235, 670
BmrFI	CCNGG	4 cut(s)	141, 433, 480, 644
BmrI	ACTGGG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	855
BmuI	ACTGGG	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	803
Bpu10I	CCTNAGC	1 cut(s)	585
BpuMI	CCSGG	2 cut(s)	433, 644
Bsa29I	ATCGAT	1 cut(s)	984
BsaJI	CCNNGG	3 cut(s)	27, 140, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 410, 586, 725
Bse1I	ACTGG	2 cut(s)	178, 786
BseBI	CCWGG	2 cut(s)	141, 480
BseCI	ATCGAT	1 cut(s)	984
BseDI	CCNNGG	3 cut(s)	27, 140, 672
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	4 cut(s)	174, 410, 586, 725
BseNI	ACTGG	2 cut(s)	178, 786
BseRI	GAGGAG	1 cut(s)	988
BseXI	GCAGC	2 cut(s)	671, 685
BseYI	CCCAGC	1 cut(s)	580
BshFI	GGCC	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	668
BshVI	ATCGAT	1 cut(s)	984
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	432, 644
BslI	CCNNNNNNNGG	4 cut(s)	174, 410, 586, 725
BsmAI	GTCTC	2 cut(s)	245, 848
BsmBI	CGTCTC	1 cut(s)	848
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	205, 233, 435, 981
Bsp19I	CCATGG	2 cut(s)	27, 672
BspACI	CCGC	1 cut(s)	382
BspANI	GGCC	1 cut(s)	26
BspDI	ATCGAT	1 cut(s)	984
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	235, 670
BspMAI	CTGCAG	1 cut(s)	703
BspMI	ACCTGC	1 cut(s)	99
BspPI	GGATC	3 cut(s)	228, 241, 443
BspT107I	GGYRCC	1 cut(s)	668
BspTI	CTTAAG	1 cut(s)	734
BsrI	ACTGG	2 cut(s)	178, 786
BssECI	CCNNGG	3 cut(s)	27, 140, 672
BssMI	GATC	4 cut(s)	205, 233, 435, 981
BssT1I	CCWWGG	2 cut(s)	27, 672
Bst2UI	CCWGG	2 cut(s)	141, 480
Bst4CI	ACNGT	4 cut(s)	442, 565, 694, 760
BstAFI	CTTAAG	1 cut(s)	734
BstAPI	GCANNNNNTGC	2 cut(s)	707, 865
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	585, 1005
BstDSI	CCRYGG	2 cut(s)	27, 672
BstF5I	GGATG	1 cut(s)	598
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	4 cut(s)	208, 236, 438, 984
BstMAI	GTCTC	2 cut(s)	245, 848
BstMBI	GATC	4 cut(s)	205, 233, 435, 981
BstMWI	GCNNNNNNNGC	4 cut(s)	484, 707, 775, 865
BstNI	CCWGG	2 cut(s)	141, 480
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	4 cut(s)	139, 431, 478, 642
BstSFI	CTRYAG	1 cut(s)	699
BstV1I	GCAGC	2 cut(s)	671, 685
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
Bsu15I	ATCGAT	1 cut(s)	984
BsuRI	GGCC	1 cut(s)	26
BsuTUI	ATCGAT	1 cut(s)	984
BtgI	CCRYGG	2 cut(s)	27, 672
BtgZI	GCGATG	2 cut(s)	353, 677
BtsCI	GGATG	1 cut(s)	598
BtsIMutI	CAGTG	2 cut(s)	438, 779
BveI	ACCTGC	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	260
CaiI	CAGNNNCTG	3 cut(s)	410, 479, 698
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	1 cut(s)	416
ClaI	ATCGAT	1 cut(s)	984
CseI	GACGC	1 cut(s)	865
Csp6I	GTAC	3 cut(s)	137, 573, 669
CspCI	CAANNNNNGTGG	2 cut(s)	768, 803
CviAII	CATG	7 cut(s)	28, 146, 246, 317, 469, 673, 707
CviQI	GTAC	3 cut(s)	137, 573, 669
DdeI	CTNAG	2 cut(s)	585, 1005
DpnI	GATC	4 cut(s)	207, 235, 437, 983
DpnII	GATC	4 cut(s)	205, 233, 435, 981
EaeI	YGGCCR	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	27, 672
EcoRII	CCWGG	2 cut(s)	139, 478
EcoT14I	CCWWGG	2 cut(s)	27, 672
ErhI	CCWWGG	2 cut(s)	27, 672
Esp3I	CGTCTC	1 cut(s)	848
FaeI	CATG	7 cut(s)	31, 149, 249, 320, 472, 676, 710
FatI	CATG	7 cut(s)	27, 145, 245, 316, 468, 672, 706
FblI	GTMKAC	1 cut(s)	730
Fnu4HI	GCNGC	2 cut(s)	660, 699
FokI	GGATG	1 cut(s)	605
Fsp4HI	GCNGC	2 cut(s)	660, 699
FspBI	CTAG	2 cut(s)	506, 515
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	2 cut(s)	660, 699
GsaI	CCCAGC	1 cut(s)	584
GsuI	CTGGAG	1 cut(s)	803
HaeII	RGCGCY	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	2 cut(s)	432, 644
HgaI	GACGC	1 cut(s)	865
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	7 cut(s)	31, 149, 249, 320, 472, 676, 710
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	3 cut(s)	13, 407, 620
HpaII	CCGG	2 cut(s)	432, 644
HphI	GGTGA	3 cut(s)	56, 112, 215
Hpy166II	GTNNAC	4 cut(s)	120, 364, 512, 731
Hpy188I	TCNGA	4 cut(s)	88, 349, 901, 961
Hpy188III	TCNNGA	3 cut(s)	103, 317, 389
Hpy8I	GTNNAC	4 cut(s)	120, 364, 512, 731
Hpy99I	CGWCG	1 cut(s)	839
HpyAV	CCTTC	3 cut(s)	194, 550, 649
HpyCH4III	ACNGT	4 cut(s)	442, 565, 694, 760
HpyCH4IV	ACGT	1 cut(s)	837
HpyCH4V	TGCA	3 cut(s)	94, 240, 701
HpyF10VI	GCNNNNNNNGC	4 cut(s)	484, 707, 775, 865
HpyF3I	CTNAG	2 cut(s)	585, 1005
HpySE526I	ACGT	1 cut(s)	837
Hsp92II	CATG	7 cut(s)	31, 149, 249, 320, 472, 676, 710
HspAI	GCGC	1 cut(s)	414
KpnI	GGTACC	1 cut(s)	672
Kzo9I	GATC	4 cut(s)	205, 233, 435, 981
LmnI	GCTCC	4 cut(s)	384, 421, 721, 943
Lsp1109I	GCAGC	2 cut(s)	671, 685
LweI	GCATC	1 cut(s)	855
MaeI	CTAG	2 cut(s)	506, 515
MaeII	ACGT	1 cut(s)	837
MaeIII	GTNAC	5 cut(s)	49, 163, 184, 559, 754
MalI	GATC	4 cut(s)	207, 235, 437, 983
MboI	GATC	4 cut(s)	205, 233, 435, 981
MfeI	CAATTG	1 cut(s)	650
MflI	RGATCY	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	7 cut(s)	150, 191, 534, 650, 684, 723, 912
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	7
MmeI	TCCRAC	1 cut(s)	820
MnlI	CCTC	7 cut(s)	3, 583, 589, 807, 836, 907, 1009
Mox20I	TGGCCA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	5 cut(s)	603, 722, 735, 915, 930
MslI	CAYNNNNRTG	3 cut(s)	315, 424, 938
Msp20I	TGGCCA	1 cut(s)	26
MspCI	CTTAAG	1 cut(s)	734
MspI	CCGG	2 cut(s)	432, 644
MspR9I	CCNGG	4 cut(s)	141, 433, 480, 644
MunI	CAATTG	1 cut(s)	650
Mva1269I	GAATGC	1 cut(s)	94
MvaI	CCWGG	2 cut(s)	141, 480
MwoI	GCNNNNNNNGC	4 cut(s)	484, 707, 775, 865
NciI	CCSGG	2 cut(s)	433, 644
NcoI	CCATGG	2 cut(s)	27, 672
NdeII	GATC	4 cut(s)	205, 233, 435, 981
NlaIII	CATG	7 cut(s)	31, 149, 249, 320, 472, 676, 710
NlaIV	GGNNCC	2 cut(s)	235, 670
NmuCI	GTSAC	2 cut(s)	163, 184
NspI	RCATGY	1 cut(s)	249
PagI	TCATGA	1 cut(s)	316
PciI	ACATGT	1 cut(s)	245
PctI	GAATGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	407, 620
PflFI	GACNNNGTC	1 cut(s)	516
PflMI	CCANNNNNTGG	2 cut(s)	410, 725
PkrI	GCNGC	2 cut(s)	661, 700
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PscI	ACATGT	1 cut(s)	245
PshBI	ATTAAT	1 cut(s)	722
Psp6I	CCWGG	2 cut(s)	139, 478
PspFI	CCCAGC	1 cut(s)	580
PspGI	CCWGG	2 cut(s)	139, 478
PspN4I	GGNNCC	2 cut(s)	235, 670
PsrI	GAACNNNNNNTAC	2 cut(s)	687, 719
PstI	CTGCAG	1 cut(s)	703
PstNI	CAGNNNCTG	3 cut(s)	410, 479, 698
PsuI	RGATCY	1 cut(s)	233
PsyI	GACNNNGTC	1 cut(s)	516
RsaI	GTAC	3 cut(s)	138, 574, 670
RsaNI	GTAC	3 cut(s)	137, 573, 669
RseI	CAYNNNNRTG	3 cut(s)	315, 424, 938
SaqAI	TTAA	5 cut(s)	603, 722, 735, 915, 930
SatI	GCNGC	2 cut(s)	660, 699
Sau3AI	GATC	4 cut(s)	205, 233, 435, 981
ScaI	AGTACT	1 cut(s)	574
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	4 cut(s)	141, 433, 480, 644
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	1 cut(s)	855
SfcI	CTRYAG	1 cut(s)	699
SmiMI	CAYNNNNRTG	3 cut(s)	315, 424, 938
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	7 cut(s)	150, 191, 534, 650, 684, 723, 912
SsiI	CCGC	1 cut(s)	382
SspI	AATATT	1 cut(s)	892
SspMI	CTAG	2 cut(s)	506, 515
StyD4I	CCNGG	4 cut(s)	139, 431, 478, 642
StyI	CCWWGG	2 cut(s)	27, 672
TaaI	ACNGT	4 cut(s)	442, 565, 694, 760
TaiI	ACGT	1 cut(s)	840
TaqI	TCGA	2 cut(s)	906, 984
TasI	AATT	7 cut(s)	150, 191, 534, 650, 684, 723, 912
TatI	WGTACW	1 cut(s)	572
TfiI	GAWTC	2 cut(s)	407, 620
Tru1I	TTAA	5 cut(s)	603, 722, 735, 915, 930
Tru9I	TTAA	5 cut(s)	603, 722, 735, 915, 930
TscAI	CASTG	2 cut(s)	445, 786
TseFI	GTSAC	2 cut(s)	163, 184
TseI	GCWGC	2 cut(s)	659, 698
Tsp45I	GTSAC	2 cut(s)	163, 184
TspDTI	ATGAA	3 cut(s)	162, 470, 695
TspRI	CASTG	2 cut(s)	445, 786
Tth111I	GACNNNGTC	1 cut(s)	516
Van91I	CCANNNNNTGG	2 cut(s)	410, 725
Vha464I	CTTAAG	1 cut(s)	734
VspI	ATTAAT	1 cut(s)	722
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	249
XmiI	GTMKAC	1 cut(s)	730
XspI	CTAG	2 cut(s)	506, 515
ZrmI	AGTACT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.