Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000372.1

Orthogroup ID

OG0019295

Physical Location & Seq

Genomic Coordinates Reverse (-)

154252 .. 154635

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000372.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgccaagaataaatggtaacttaagcaagcaaaacatcacggtggccggcgatgccatgcaccccatgacacctgacctagcacaggggggttgttcatcattagaagatgcagtgatcttaggcaggcatattgggacatcctttgtaaaaaatggacaagtaattgtgcagaaagagatgagtgaagtattgggtaaatatgtggaagaaagaaggtggcgcgtcgccttgttgatcactggatcatatatatcaggatggatgcagcaggcaggctctggatggggtatgaaattcttgagagacgccatattttacaagttccttttccctaagatggttagatatttatactatgacagtggaaaactcgacttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009540 GO:0009628 GO:0009639 GO:0009687 GO:0009688 GO:0009743 GO:0009756 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010114 GO:0010182 GO:0016053 GO:0016106 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0023052 GO:0030104 GO:0031967 GO:0031975 GO:0032501 GO:0032787 GO:0042221 GO:0042440 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046148 GO:0046165 GO:0046394 GO:0048871 GO:0048878 GO:0050789 GO:0050794 GO:0050878 GO:0050891 GO:0050896 GO:0051716 GO:0052662 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0072330 GO:1901576 GO:1901615 GO:1901617 GO:1901700 GO:1901701 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_3

Protein Analysis

127

Amino Acids

14.33

Weight (kDa)

9.3

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019295)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G162100_v2.0.a1
rosa_laevigata	RLG00000031986
rosa_multiflora	Rmu_co8355283.1_g000001 Rmu_ssc0000372.1_g000043
rosa_roxburghii	Rroxscaffold_2G00124210
rosa_rugosa	Rorug02G0223200
rosa_samantha	Rh2AG280000 Rh2BG291600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	225
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	85, 340
AflII	CTTAAG	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	253
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	3 cut(s)	255, 279, 334
BclI	TGATCA	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	2 cut(s)	80, 382
BfrI	CTTAAG	1 cut(s)	22
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
BmsI	GCATC	3 cut(s)	43, 100, 255
BpuEI	CTTGAG	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 340
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	247
BseGI	GGATG	4 cut(s)	140, 266, 270, 290
BseLI	CCNNNNNNNGG	2 cut(s)	85, 340
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	85, 340
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	117, 237, 245
BspANI	GGCC	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	225
BspPI	GGATC	1 cut(s)	253
BspTI	CTTAAG	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	47
BssMI	GATC	3 cut(s)	117, 237, 245
BssNI	GRCGYC	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	43, 365
BstACI	GRCGYC	1 cut(s)	309
BstAFI	CTTAAG	1 cut(s)	22
BstC8I	GCNNGC	5 cut(s)	29, 49, 128, 273, 277
BstDEI	CTNAG	2 cut(s)	121, 336
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstF5I	GGATG	4 cut(s)	140, 266, 270, 290
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	3 cut(s)	120, 240, 248
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	3 cut(s)	117, 237, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	4 cut(s)	140, 266, 270, 290
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	3 cut(s)	120, 240, 370
Cac8I	GCNNGC	5 cut(s)	29, 49, 128, 273, 277
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	47
CseI	GACGC	2 cut(s)	214, 317
CviAII	CATG	2 cut(s)	58, 67
CviJI	RGCY	2 cut(s)	47, 279
CviKI_1	RGCY	2 cut(s)	47, 279
DdeI	CTNAG	2 cut(s)	121, 336
DpnI	GATC	3 cut(s)	119, 239, 247
DpnII	GATC	3 cut(s)	117, 237, 245
EaeI	YGGCCR	1 cut(s)	45
EcoNI	CCTNNNNNAGG	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	2 cut(s)	61, 70
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	2 cut(s)	57, 66
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	4 cut(s)	127, 273, 277, 297
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	2 cut(s)	80, 382
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	2 cut(s)	214, 317
HhaI	GCGC	1 cut(s)	225
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	61, 70
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	48
Hpy188III	TCNNGA	3 cut(s)	258, 282, 301
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	2 cut(s)	43, 365
HpyCH4V	TGCA	4 cut(s)	61, 113, 172, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	121, 336
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	61, 70
HspAI	GCGC	1 cut(s)	223
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	117, 237, 245
LpnPI	CCDG	9 cut(s)	61, 71, 87, 112, 228, 243, 257, 261, 267
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	3 cut(s)	43, 100, 255
MaeI	CTAG	2 cut(s)	80, 382
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	3 cut(s)	119, 239, 247
MboI	GATC	3 cut(s)	117, 237, 245
MboII	GAAGA	2 cut(s)	119, 221
MluCI	AATT	2 cut(s)	165, 296
MroNI	GCCGGC	1 cut(s)	47
MseI	TTAA	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	41
MspCI	CTTAAG	1 cut(s)	22
MspI	CCGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	53
NaeI	GCCGGC	1 cut(s)	49
NdeII	GATC	3 cut(s)	117, 237, 245
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	2 cut(s)	61, 70
PdiI	GCCGGC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	3 cut(s)	117, 237, 245
SetI	ASST	3 cut(s)	76, 81, 221
SfaNI	GCATC	3 cut(s)	43, 100, 255
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	22, 301
SmoI	CTYRAG	2 cut(s)	22, 301
Sse9I	AATT	2 cut(s)	165, 296
SspMI	CTAG	2 cut(s)	80, 382
TaaI	ACNGT	2 cut(s)	43, 365
TaqI	TCGA	1 cut(s)	375
TasI	AATT	2 cut(s)	165, 296
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	3 cut(s)	120, 247, 370
TseI	GCWGC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	87, 308
TspRI	CASTG	3 cut(s)	120, 247, 370
Vha464I	CTTAAG	1 cut(s)	22
XagI	CCTNNNNNAGG	1 cut(s)	83
XapI	RAATTY	1 cut(s)	296
XspI	CTAG	2 cut(s)	80, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.