RLG00000032771

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018248
Physical Location & Seq
Reverse (-)
18905705 .. 18907089
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032771

Sequence Viewer

Length: 522 bp
ATGTCGCCCTTCTCGAATTTGCTCTCGGAGAAGCCACAGACGGCCTATTGGAGGATGATGGCGGCGCGGTGGTGGCCTTGTCGACGCATCGACATGGTCGGTGCTTATGAGATCCTTGATGATGGTTCAGGAGTAGGGGATGCTGTTTTTGAGGTTGTTGAAGTAGAAGTGATCAGGCTGGAAGAGGTACTTGAGCTGCCAGGGGCGCTGGGCCTGGATGATGGAGTCAGGGCAGGACCCGAAGCTACCGTTATTGATCCGGGCAGTGTTGACGTTGTGGTGGGAGAATTCGGCTGCCATTTCGAAGAGGCGACACCTTTTTCTGGCATAAAAGCTCCACCGACCGGGATGTCAAAGTGTTCGCTGCATCTCTGCGGTACCTGGTGGTCTCCGGCCACCGTTGCCTCTGTTGCGCACTGCTCATGGCCTATCTTCGGCAACGGTGCACTCTCTCAATTTCAATTTCATGTATTATCATCTTTTCCACCTCATTTCGATGTATTGATGGGATACCCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.82

Weight (kDa)

4.58

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 349
Acc16I TGCGCA 1 cut(s) 414
Acc65I GGTACC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 377
AccI GTMKAC 1 cut(s) 82
AccII CGCG 1 cut(s) 67
AciI CCGC 3 cut(s) 62, 67, 375
AclWI GGATC 2 cut(s) 106, 251
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 2 cut(s) 16, 287
AfaI GTAC 2 cut(s) 189, 379
AfiI CCNNNNNNNGG 4 cut(s) 51, 323, 344, 434
AgsI TTSAA 2 cut(s) 161, 461
AjnI CCWGG 3 cut(s) 199, 213, 380
AluBI AGCT 3 cut(s) 196, 245, 335
AluI AGCT 3 cut(s) 196, 245, 335
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 1 cut(s) 393
Alw44I GTGCAC 1 cut(s) 444
AlwI GGATC 2 cut(s) 106, 251
AoxI GGCC 5 cut(s) 42, 74, 211, 393, 425
ApaLI GTGCAC 1 cut(s) 444
ApeKI GCWGC 3 cut(s) 196, 294, 364
ApoI RAATTY 2 cut(s) 16, 287
Asp718I GGTACC 1 cut(s) 377
AspLEI GCGC 3 cut(s) 67, 208, 415
AspS9I GGNCC 2 cut(s) 211, 236
AsuC2I CCSGG 2 cut(s) 261, 346
AsuII TTCGAA 1 cut(s) 303
AvaII GGWCC 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 448
BanI GGYRCC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 448
BbvI GCAGC 3 cut(s) 183, 281, 351
BccI CCATC 4 cut(s) 52, 116, 215, 499
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 3 cut(s) 201, 215, 382
BciVI GTATCC 1 cut(s) 503
BclI TGATCA 1 cut(s) 171
BcnI CCSGG 2 cut(s) 261, 346
BcoDI GTCTC 1 cut(s) 393
BfoI RGCGCY 1 cut(s) 209
BfuI GTATCC 1 cut(s) 503
BisI GCNGC 4 cut(s) 63, 197, 295, 365
BlsI GCNGC 4 cut(s) 64, 198, 296, 366
Bme1390I CCNGG 5 cut(s) 201, 215, 261, 346, 382
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 211, 236
BmiI GGNNCC 2 cut(s) 238, 379
BmrFI CCNGG 5 cut(s) 201, 215, 261, 346, 382
BmsI GCATC 3 cut(s) 96, 130, 376
Bpu14I TTCGAA 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 2 cut(s) 261, 346
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 323, 344, 434
BseBI CCWGG 3 cut(s) 201, 215, 382
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 4 cut(s) 60, 145, 223, 354
BseLI CCNNNNNNNGG 4 cut(s) 51, 323, 344, 434
BseSI GKGCMC 1 cut(s) 448
BseXI GCAGC 3 cut(s) 183, 281, 351
BseYI CCCAGC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 67
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 5 cut(s) 44, 76, 213, 395, 427
BshNI GGYRCC 1 cut(s) 377
BsiEI CGRYCG 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 448
BsiSI CCGG 3 cut(s) 260, 345, 392
BslI CCNNNNNNNGG 4 cut(s) 51, 323, 344, 434
BsmAI GTCTC 1 cut(s) 393
BsnI GGCC 5 cut(s) 44, 76, 213, 395, 427
Bso31I GGTCTC 1 cut(s) 393
Bsp119I TTCGAA 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 3 cut(s) 111, 171, 256
BspACI CCGC 3 cut(s) 62, 67, 375
BspANI GGCC 5 cut(s) 44, 76, 213, 395, 427
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 238, 379
BspPI GGATC 2 cut(s) 106, 251
BspT104I TTCGAA 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 377
BspTNI GGTCTC 1 cut(s) 393
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 3 cut(s) 111, 171, 256
Bst2UI CCWGG 3 cut(s) 201, 215, 382
Bst4CI ACNGT 3 cut(s) 250, 400, 443
Bst6I CTCTTC 2 cut(s) 177, 300
BstBI TTCGAA 1 cut(s) 303
BstENI CCTNNNNNAGG 1 cut(s) 49
BstF5I GGATG 4 cut(s) 60, 145, 223, 354
BstFNI CGCG 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 3 cut(s) 67, 208, 415
BstKTI GATC 3 cut(s) 114, 174, 259
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 3 cut(s) 111, 171, 256
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 4 cut(s) 73, 205, 401, 410
BstNI CCWGG 3 cut(s) 201, 215, 382
BstSCI CCNGG 5 cut(s) 199, 213, 259, 344, 380
BstSLI GKGCMC 1 cut(s) 448
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 183, 281, 351
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BsuI GTATCC 1 cut(s) 503
BsuRI GGCC 5 cut(s) 44, 76, 213, 395, 427
BtsCI GGATG 4 cut(s) 60, 145, 223, 354
BtsI GCAGTG 2 cut(s) 271, 415
BtsIMutI CAGTG 2 cut(s) 271, 415
CfoI GCGC 3 cut(s) 67, 208, 415
Cfr13I GGNCC 2 cut(s) 211, 236
CseI GACGC 1 cut(s) 93
CsiI ACCWGGT 1 cut(s) 380
Csp6I GTAC 2 cut(s) 188, 378
CviAII CATG 3 cut(s) 94, 423, 467
CviQI GTAC 2 cut(s) 188, 378
DpnI GATC 3 cut(s) 113, 173, 258
DpnII GATC 3 cut(s) 111, 171, 256
DrdI GACNNNNNNGTC 1 cut(s) 349
DseDI GACNNNNNNGTC 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 2 cut(s) 177, 300
EarI CTCTTC 2 cut(s) 177, 300
Eco31I GGTCTC 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 287
EcoRII CCWGG 3 cut(s) 199, 213, 380
FaeI CATG 3 cut(s) 97, 426, 470
FaiI YATR 5 cut(s) 95, 108, 329, 424, 468
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 3 cut(s) 93, 422, 466
FbaI TGATCA 1 cut(s) 171
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 4 cut(s) 63, 197, 295, 365
FokI GGATG 4 cut(s) 67, 152, 230, 361
Fsp4HI GCNGC 4 cut(s) 63, 197, 295, 365
FspI TGCGCA 1 cut(s) 414
GlaI GCGC 3 cut(s) 66, 207, 414
GluI GCNGC 4 cut(s) 63, 197, 295, 365
GsaI CCCAGC 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 5 cut(s) 44, 76, 213, 395, 427
HapII CCGG 3 cut(s) 260, 345, 392
HgaI GACGC 1 cut(s) 93
HhaI GCGC 3 cut(s) 67, 208, 415
Hin1II CATG 3 cut(s) 97, 426, 470
Hin6I GCGC 3 cut(s) 65, 206, 413
HinP1I GCGC 3 cut(s) 65, 206, 413
HincII GTYRAC 2 cut(s) 83, 271
HindII GTYRAC 2 cut(s) 83, 271
HinfI GANTC 1 cut(s) 225
HpaII CCGG 3 cut(s) 260, 345, 392
Hpy166II GTNNAC 3 cut(s) 83, 271, 446
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 2 cut(s) 13, 129
Hpy8I GTNNAC 3 cut(s) 83, 271, 446
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 3 cut(s) 250, 400, 443
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 2 cut(s) 367, 446
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 205, 401, 410
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 3 cut(s) 97, 426, 470
HspAI GCGC 3 cut(s) 65, 206, 413
KpnI GGTACC 1 cut(s) 381
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 3 cut(s) 111, 171, 256
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 3 cut(s) 183, 281, 351
LweI GCATC 3 cut(s) 96, 130, 376
MabI ACCWGGT 1 cut(s) 380
MaeII ACGT 1 cut(s) 273
MalI GATC 3 cut(s) 113, 173, 258
MboI GATC 3 cut(s) 111, 171, 256
MboII GAAGA 3 cut(s) 194, 317, 424
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 448
MluCI AATT 4 cut(s) 16, 287, 455, 461
MlyI GAGTC 1 cut(s) 234
MnlI CCTC 6 cut(s) 45, 145, 178, 301, 415, 498
MslI CAYNNNNRTG 2 cut(s) 92, 495
MspI CCGG 3 cut(s) 260, 345, 392
MspR9I CCNGG 5 cut(s) 201, 215, 261, 346, 382
MvaI CCWGG 3 cut(s) 201, 215, 382
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 4 cut(s) 73, 205, 401, 410
NciI CCSGG 2 cut(s) 261, 346
NdeII GATC 3 cut(s) 111, 171, 256
NlaIII CATG 3 cut(s) 97, 426, 470
NlaIV GGNNCC 2 cut(s) 238, 379
NsbI TGCGCA 1 cut(s) 414
NspV TTCGAA 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 4 cut(s) 64, 198, 296, 366
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 3 cut(s) 199, 213, 380
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 3 cut(s) 199, 213, 380
PspN4I GGNNCC 2 cut(s) 238, 379
PspPI GGNCC 2 cut(s) 211, 236
PspPPI RGGWCCY 1 cut(s) 236
PsuI RGATCY 1 cut(s) 111
PsyI GACNNNGTC 1 cut(s) 95
RsaI GTAC 2 cut(s) 189, 379
RsaNI GTAC 2 cut(s) 188, 378
RseI CAYNNNNRTG 2 cut(s) 92, 495
SalI GTCGAC 1 cut(s) 81
SatI GCNGC 4 cut(s) 63, 197, 295, 365
Sau3AI GATC 3 cut(s) 111, 171, 256
Sau96I GGNCC 2 cut(s) 211, 236
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 5 cut(s) 201, 215, 261, 346, 382
SduI GDGCHC 1 cut(s) 448
SetI ASST 9 cut(s) 156, 189, 198, 247, 276, 319, 337, 383, 490
SexAI ACCWGGT 1 cut(s) 380
SfaNI GCATC 3 cut(s) 96, 130, 376
SfuI TTCGAA 1 cut(s) 303
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 92, 495
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 4 cut(s) 16, 287, 455, 461
SsiI CCGC 3 cut(s) 62, 67, 375
StyD4I CCNGG 5 cut(s) 199, 213, 259, 344, 380
TaaI ACNGT 3 cut(s) 250, 400, 443
TaiI ACGT 1 cut(s) 276
TaqI TCGA 5 cut(s) 14, 82, 90, 303, 495
TasI AATT 4 cut(s) 16, 287, 455, 461
TauI GCSGC 1 cut(s) 65
TscAI CASTG 2 cut(s) 271, 422
TseI GCWGC 3 cut(s) 196, 294, 364
TspDTI ATGAA 1 cut(s) 455
TspRI CASTG 2 cut(s) 271, 422
Tth111I GACNNNGTC 1 cut(s) 95
VneI GTGCAC 1 cut(s) 444
VpaK11BI GGWCC 1 cut(s) 236
XagI CCTNNNNNAGG 1 cut(s) 49
XapI RAATTY 2 cut(s) 16, 287
XmiI GTMKAC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.