Rh5DG171100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018248
Physical Location & Seq
Reverse (-)
18352308 .. 18352529
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG171100.1

Sequence Viewer

Length: 222 bp
ATGGAGGATGCTGTTTTTGAGGTCGTTGAAGTAGAAGTAATCGGGCTAGGAGAGGTACTTGAGCTGCTAGCAGCGCTGGGCCTGGATGATGGAGTCTGGGCAGGACCCGAAGCTGCCGTTGTTGATCCGGGCGACGTTGGGGTCGTGGTGGGAGAATTCGGCAATGATTTCGGAAGGGGTAATGAAGAAAAGTTTGGACTTTTTGGAGGCGTGGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.43

Weight (kDa)

4.05

Isoelectric Point (pI)

6.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 1 cut(s) 57
AfeI AGCGCT 1 cut(s) 75
AgsI TTSAA 1 cut(s) 29
AjnI CCWGG 1 cut(s) 81
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AluBI AGCT 2 cut(s) 64, 113
AluI AGCT 2 cut(s) 64, 113
AlwI GGATC 1 cut(s) 119
Aor51HI AGCGCT 1 cut(s) 75
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 3 cut(s) 64, 71, 113
ApoI RAATTY 1 cut(s) 155
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 2 cut(s) 79, 104
AsuC2I CCSGG 1 cut(s) 129
AsuNHI GCTAGC 1 cut(s) 67
AvaII GGWCC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 51, 83, 100
BccI CCATC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 1 cut(s) 83
BcnI CCSGG 1 cut(s) 129
BfaI CTAG 2 cut(s) 47, 68
BfoI RGCGCY 1 cut(s) 77
BisI GCNGC 3 cut(s) 65, 72, 114
BlsI GCNGC 3 cut(s) 66, 73, 115
Bme1390I CCNGG 2 cut(s) 83, 129
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 79, 104
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 2 cut(s) 83, 129
BmtI GCTAGC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 129
Bse3DI GCAATG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 83
BseGI GGATG 2 cut(s) 13, 91
BseMI GCAATG 1 cut(s) 169
BseXI GCAGC 3 cut(s) 51, 83, 100
BseYI CCCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 128
BsnI GGCC 1 cut(s) 81
Bsp143I GATC 1 cut(s) 124
BspANI GGCC 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 106
BspOI GCTAGC 1 cut(s) 71
BspPI GGATC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 169
BssMI GATC 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 69
BstF5I GGATG 2 cut(s) 13, 91
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 2 cut(s) 81, 127
BstV1I GCAGC 3 cut(s) 51, 83, 100
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 2 cut(s) 13, 91
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 79, 104
Csp6I GTAC 1 cut(s) 56
CviJI RGCY 4 cut(s) 46, 64, 81, 113
CviKI_1 RGCY 4 cut(s) 46, 64, 81, 113
CviQI GTAC 1 cut(s) 56
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 104
Eco47III AGCGCT 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 65, 72, 114
FokI GGATG 2 cut(s) 20, 98
Fsp4HI GCNGC 3 cut(s) 65, 72, 114
FspBI CTAG 2 cut(s) 47, 68
GlaI GCGC 1 cut(s) 75
GluI GCNGC 3 cut(s) 65, 72, 114
GsaI CCCAGC 1 cut(s) 80
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 128
HhaI GCGC 1 cut(s) 76
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 1 cut(s) 93
HpaII CCGG 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 173
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 168
HpyCH4IV ACGT 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpySE526I ACGT 1 cut(s) 135
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 1 cut(s) 124
LpnPI CCDG 6 cut(s) 62, 68, 82, 87, 95, 141
Lsp1109I GCAGC 3 cut(s) 51, 83, 100
MaeI CTAG 2 cut(s) 47, 68
MaeII ACGT 1 cut(s) 135
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 197
MluCI AATT 1 cut(s) 155
MlyI GAGTC 1 cut(s) 102
MnlI CCTC 3 cut(s) 13, 46, 200
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 83, 129
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 73
NciI CCSGG 1 cut(s) 129
NdeII GATC 1 cut(s) 124
NheI GCTAGC 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PkrI GCNGC 3 cut(s) 66, 73, 115
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PpuMI RGGWCCY 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 2 cut(s) 79, 104
PspPPI RGGWCCY 1 cut(s) 104
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SatI GCNGC 3 cut(s) 65, 72, 114
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 2 cut(s) 79, 104
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 2 cut(s) 83, 129
SetI ASST 5 cut(s) 24, 57, 66, 115, 138
SinI GGWCC 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 1 cut(s) 155
SspMI CTAG 2 cut(s) 47, 68
StyD4I CCNGG 2 cut(s) 81, 127
TaiI ACGT 1 cut(s) 138
TasI AATT 1 cut(s) 155
TseI GCWGC 3 cut(s) 64, 71, 113
TspDTI ATGAA 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 104
XapI RAATTY 1 cut(s) 155
XspI CTAG 2 cut(s) 47, 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.