Rh1DG439900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018248
Physical Location & Seq
Reverse (-)
65029050 .. 65029421
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG439900.1

Sequence Viewer

Length: 372 bp
ATGGCGGCGACGGTGGTGGTTGTCGACGTGGTCGGCGTTGATGAGGTCCTTGATGAGGGTGCGGGAGTGGAGGATGCCGGCTTGGAGGTGGTTGAAGTAGAAGTGATCGGGCTGGGAGAGGTACTGCTGCCAGCGGCGCTGGGCCTGGAGGACAGAGTCGGGGCAGGACCCGAAGCTGCCGTTGTTGATTCAGGCGACGGTGGGGTCGTGGTGGGAGAATTCGGCGGCGATTTCGGATGGGGTGATGAAGGAGAGTTTGGGCTTTTTGGAGGCGTGGGTGTTGGAATCGGCGTTCAGGGTGTGGTTGTGGTCGGGGGAGGAGGCCATTTCTGGGGGAGGAAGATTTTAGGGTTGGGGTTTGAAAGGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

12.03

Weight (kDa)

4.05

Isoelectric Point (pI)

11.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 24
AciI CCGC 4 cut(s) 5, 62, 134, 225
AcsI RAATTY 1 cut(s) 218
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 55, 331
AgsI TTSAA 2 cut(s) 95, 362
AjiI CACGTC 1 cut(s) 28
AjnI CCWGG 1 cut(s) 144
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AloI GAACNNNNNNTCC 2 cut(s) 276, 308
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
AoxI GGCC 2 cut(s) 142, 322
ApeKI GCWGC 2 cut(s) 127, 176
ApoI RAATTY 1 cut(s) 218
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 3 cut(s) 46, 142, 167
AsuHPI GGTGA 1 cut(s) 254
AvaII GGWCC 2 cut(s) 46, 167
BbvI GCAGC 2 cut(s) 114, 163
BccI CCATC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 146
BfoI RGCGCY 1 cut(s) 140
BisI GCNGC 5 cut(s) 6, 128, 135, 177, 226
BlsI GCNGC 5 cut(s) 7, 129, 136, 178, 227
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 2 cut(s) 46, 167
BmgBI CACGTC 1 cut(s) 28
BmgT120I GGNCC 3 cut(s) 46, 142, 167
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 64
BpmI CTGGAG 1 cut(s) 167
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 331
Bse118I RCCGGY 1 cut(s) 77
BseBI CCWGG 1 cut(s) 146
BseGI GGATG 2 cut(s) 79, 242
BseLI CCNNNNNNNGG 2 cut(s) 55, 331
BseRI GAGGAG 1 cut(s) 333
BseXI GCAGC 2 cut(s) 114, 163
BseYI CCCAGC 2 cut(s) 112, 139
BshFI GGCC 2 cut(s) 144, 324
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 55, 331
BsnI GGCC 2 cut(s) 144, 324
Bsp143I GATC 1 cut(s) 105
BspACI CCGC 4 cut(s) 5, 62, 134, 225
BspANI GGCC 2 cut(s) 144, 324
BspLI GGNNCC 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssMI GATC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 2 cut(s) 13, 200
BstC8I GCNNGC 2 cut(s) 79, 132
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 2 cut(s) 79, 242
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 114, 163
BsuRI GGCC 2 cut(s) 144, 324
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 2 cut(s) 79, 242
Cac8I GCNNGC 2 cut(s) 79, 132
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 3 cut(s) 46, 142, 167
Csp6I GTAC 1 cut(s) 122
CviJI RGCY 6 cut(s) 81, 112, 144, 176, 262, 324
CviKI_1 RGCY 6 cut(s) 81, 112, 144, 176, 262, 324
CviQI GTAC 1 cut(s) 122
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 46, 167
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoO109I RGGNCCY 2 cut(s) 46, 167
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 144
FauI CCCGC 1 cut(s) 55
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 5 cut(s) 6, 128, 135, 177, 226
FokI GGATG 2 cut(s) 86, 249
Fsp4HI GCNGC 5 cut(s) 6, 128, 135, 177, 226
GlaI GCGC 1 cut(s) 138
GluI GCNGC 5 cut(s) 6, 128, 135, 177, 226
GsaI CCCAGC 2 cut(s) 116, 143
GsuI CTGGAG 1 cut(s) 167
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 2 cut(s) 144, 324
HapII CCGG 1 cut(s) 78
HhaI GCGC 1 cut(s) 139
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 3 cut(s) 156, 188, 285
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 3 cut(s) 13, 29, 200
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 2 cut(s) 13, 200
HpyCH4IV ACGT 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpySE526I ACGT 1 cut(s) 27
HspAI GCGC 1 cut(s) 137
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
Kzo9I GATC 1 cut(s) 105
Lsp1109I GCAGC 2 cut(s) 114, 163
LweI GCATC 1 cut(s) 64
MaeII ACGT 1 cut(s) 27
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 1 cut(s) 352
MluCI AATT 1 cut(s) 218
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 262
MroNI GCCGGC 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 136
NaeI GCCGGC 1 cut(s) 79
NdeII GATC 1 cut(s) 105
NgoMIV GCCGGC 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 169
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 204
PdiI GCCGGC 1 cut(s) 79
PfeI GAWTC 2 cut(s) 188, 285
PflFI GACNNNGTC 2 cut(s) 29, 155
PkrI GCNGC 5 cut(s) 7, 129, 136, 178, 227
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PpuMI RGGWCCY 2 cut(s) 46, 167
Psp5II RGGWCCY 2 cut(s) 46, 167
Psp6I CCWGG 1 cut(s) 144
PspFI CCCAGC 2 cut(s) 112, 139
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 3 cut(s) 46, 142, 167
PspPPI RGGWCCY 2 cut(s) 46, 167
PsyI GACNNNGTC 2 cut(s) 29, 155
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 5 cut(s) 6, 128, 135, 177, 226
Sau3AI GATC 1 cut(s) 105
Sau96I GGNCC 3 cut(s) 46, 142, 167
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 146
SetI ASST 5 cut(s) 30, 48, 90, 123, 178
SfaNI GCATC 1 cut(s) 64
SinI GGWCC 2 cut(s) 46, 167
Sse9I AATT 1 cut(s) 218
SsiI CCGC 4 cut(s) 5, 62, 134, 225
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 13, 200
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 218
TauI GCSGC 3 cut(s) 8, 137, 228
TfiI GAWTC 2 cut(s) 188, 285
TseI GCWGC 2 cut(s) 127, 176
TspDTI ATGAA 1 cut(s) 261
Tth111I GACNNNGTC 2 cut(s) 29, 155
VpaK11BI GGWCC 2 cut(s) 46, 167
XagI CCTNNNNNAGG 1 cut(s) 53
XapI RAATTY 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.