Rh4DG106000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018248
Physical Location & Seq
Forward (+)
16346531 .. 16346893
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG106000.1

Sequence Viewer

Length: 363 bp
ATGAAATCGGAAAAGGAATGGAAGAAGATTACGAACCAGAGTAGCGACGACGAAGTCGAAGGAGCCATGGGTGAGATTGAAGGCGAGGACGTTGGGCATGTCATCGCTGAACTCCGTCTCCACGCCGCAGTAGCGAGACTCGCTTTTGTCACCTGCTCTTTCCCCAAGCGGCATTTTTGGTACAACTACTCTATGTCCCTGCTCGAACTTGCTCTCGGAGAAGCCCCAGGCGGCCTGCTGGAGGACGATGGCGGCGGCGATGGTGGCGTTGACTGTGTTAGAGACCTCGTCGACGTGGTCGGCGTTGATGAGGTCCTTGATAAGGGTGCGGGAGTGGATGATGCCCGGCTTGGAGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.76

Weight (kDa)

4.36

Isoelectric Point (pI)

27.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 161
AasI GACNNNNNNGTC 1 cut(s) 53
Acc36I ACCTGC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 291
AciI CCGC 6 cut(s) 126, 169, 231, 252, 255, 329
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 241, 322
AgsI TTSAA 1 cut(s) 80
AjiI CACGTC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 226
AloI GAACNNNNNNTCC 2 cut(s) 102, 134
Alw26I GTCTC 3 cut(s) 122, 130, 276
AoxI GGCC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 313
AsuC2I CCSGG 1 cut(s) 346
AsuHPI GGTGA 2 cut(s) 83, 142
AvaII GGWCC 1 cut(s) 313
BccI CCATC 2 cut(s) 242, 254
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 1 cut(s) 346
BcoDI GTCTC 3 cut(s) 122, 130, 276
BfuAI ACCTGC 1 cut(s) 161
BisI GCNGC 5 cut(s) 126, 170, 232, 253, 256
BlsI GCNGC 5 cut(s) 127, 171, 233, 254, 257
Bme1390I CCNGG 2 cut(s) 228, 346
Bme18I GGWCC 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 2 cut(s) 228, 346
BmsI GCATC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 346
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 66, 226
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 322
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 66, 226
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 2 cut(s) 241, 322
BshFI GGCC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 346
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 241, 322
BsmAI GTCTC 3 cut(s) 122, 130, 276
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 1 cut(s) 234
Bso31I GGTCTC 1 cut(s) 276
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 6 cut(s) 126, 169, 231, 252, 255, 329
BspANI GGCC 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 66, 226
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 66
BstENI CCTNNNNNAGG 2 cut(s) 239, 320
BstF5I GGATG 1 cut(s) 343
BstMAI GTCTC 3 cut(s) 122, 130, 276
BstMWI GCNNNNNNNGC 3 cut(s) 131, 140, 264
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 101
BstSCI CCNGG 2 cut(s) 226, 344
BsuRI GGCC 1 cut(s) 234
BtgI CCRYGG 1 cut(s) 66
BtgZI GCGATG 2 cut(s) 88, 273
BtrI CACGTC 1 cut(s) 295
BtsCI GGATG 1 cut(s) 343
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 181
CviAII CATG 2 cut(s) 67, 98
CviJI RGCY 4 cut(s) 65, 224, 234, 349
CviKI_1 RGCY 4 cut(s) 65, 224, 234, 349
CviQI GTAC 1 cut(s) 181
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 313
EcoNI CCTNNNNNAGG 2 cut(s) 239, 320
EcoO109I RGGNCCY 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 2 cut(s) 70, 101
FaiI YATR 3 cut(s) 68, 99, 194
FaqI GGGAC 1 cut(s) 181
FatI CATG 2 cut(s) 66, 97
FauI CCCGC 1 cut(s) 322
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 5 cut(s) 126, 170, 232, 253, 256
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 5 cut(s) 126, 170, 232, 253, 256
GluI GCNGC 5 cut(s) 126, 170, 232, 253, 256
GsuI CTGGAG 1 cut(s) 260
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 346
Hin1II CATG 2 cut(s) 70, 101
HincII GTYRAC 2 cut(s) 271, 292
HindII GTYRAC 2 cut(s) 271, 292
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 346
HphI GGTGA 2 cut(s) 83, 142
Hpy166II GTNNAC 2 cut(s) 271, 292
Hpy188I TCNGA 2 cut(s) 10, 218
Hpy8I GTNNAC 2 cut(s) 271, 292
Hpy99I CGWCG 4 cut(s) 50, 53, 293, 296
HpyAV CCTTC 2 cut(s) 53, 74
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 2 cut(s) 90, 294
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 140, 264
HpySE526I ACGT 2 cut(s) 90, 294
Hsp92II CATG 2 cut(s) 70, 101
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 8 cut(s) 50, 166, 212, 213, 224, 240, 248, 359
LweI GCATC 1 cut(s) 331
MaeII ACGT 2 cut(s) 90, 294
MaeIII GTNAC 1 cut(s) 148
MboII GAAGA 2 cut(s) 34, 37
MlyI GAGTC 1 cut(s) 132
MnlI CCTC 5 cut(s) 79, 235, 296, 304, 347
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 2 cut(s) 228, 346
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 3 cut(s) 131, 140, 264
NciI CCSGG 1 cut(s) 346
NcoI CCATGG 1 cut(s) 66
NlaIII CATG 2 cut(s) 70, 101
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 148
NspI RCATGY 1 cut(s) 101
PaqCI CACCTGC 1 cut(s) 161
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 300
PflFI GACNNNGTC 3 cut(s) 53, 287, 296
PkrI GCNGC 5 cut(s) 127, 171, 233, 254, 257
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
PpuMI RGGWCCY 1 cut(s) 313
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 313
PspPPI RGGWCCY 1 cut(s) 313
PsyI GACNNNGTC 3 cut(s) 53, 287, 296
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SalI GTCGAC 1 cut(s) 290
SatI GCNGC 5 cut(s) 126, 170, 232, 253, 256
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 2 cut(s) 228, 346
SetI ASST 6 cut(s) 93, 155, 288, 297, 315, 358
SfaNI GCATC 1 cut(s) 331
SgrDI CGTCGACG 1 cut(s) 290
SinI GGWCC 1 cut(s) 313
SsiI CCGC 6 cut(s) 126, 169, 231, 252, 255, 329
StyD4I CCNGG 2 cut(s) 226, 344
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 2 cut(s) 93, 297
TaqI TCGA 3 cut(s) 57, 204, 291
TauI GCSGC 5 cut(s) 128, 172, 234, 255, 258
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 104
Tth111I GACNNNGTC 3 cut(s) 53, 287, 296
VpaK11BI GGWCC 1 cut(s) 313
XagI CCTNNNNNAGG 2 cut(s) 239, 320
XceI RCATGY 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.