Rh6AG170600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018248
Physical Location & Seq
Forward (+)
27547716 .. 27548201
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG170600.1

Sequence Viewer

Length: 486 bp
ATGCCCGCCGGCGCGAGTGACGTAGGCCTCAATCGACTTCTTAACGGCGCCGTAGGCGTAGTGGAGCATGACGACGGCGTCGCCCTGCTCGAACTTGCTCTCGGAGAAGCCCCAGGAGGCCTGCTGGAGGACGATGGCGGCGGCGGTGGTGGCGTTGTCGACGTGGTCGGCGTTGATGAGGTCCTTGATGAGGGTGCGGGAGTGGAGGATGCCGGCTTGGAGGTGGTTGAAGTAGAAGTGATCGGGCTGGGAGAGGTACTTGAGATGCCAGCGGCGCTGGGCTGGAGGACGGAGTCGGGGCAGGACCCGAAGCTGCCGTTGTTGATTCGGGCGACGGTGGGGTCGTGGTGGGAGAATTCGGCGGCGATTTCGGAGGGGGTGATAAAGGAGAGTTTGGGCTTTTTGGAGGCGTGGGTGTTGGAATCGCCGTTCAGGGTGTGGTTGTGGTCGGGGGAGGAGGCCATTGCTGGGGGAGGAAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

16.51

Weight (kDa)

4.05

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 77, 340
AccB1I GGYRCC 1 cut(s) 47
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 14
AciI CCGC 7 cut(s) 6, 138, 141, 144, 197, 272, 362
AcsI RAATTY 1 cut(s) 355
AcyI GRCGYC 2 cut(s) 48, 78
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 3 cut(s) 127, 190, 468
AgsI TTSAA 1 cut(s) 230
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 1 cut(s) 112
AloI GAACNNNNNNTCC 2 cut(s) 413, 445
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
AoxI GGCC 3 cut(s) 25, 118, 459
ApeKI GCWGC 1 cut(s) 313
ApoI RAATTY 1 cut(s) 355
AspLEI GCGC 3 cut(s) 14, 50, 277
AspS9I GGNCC 2 cut(s) 181, 304
AsuHPI GGTGA 1 cut(s) 391
AvaII GGWCC 2 cut(s) 181, 304
BanI GGYRCC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 300
BccI CCATC 1 cut(s) 128
BceAI ACGGC 5 cut(s) 35, 61, 91, 301, 412
BciT130I CCWGG 1 cut(s) 114
BfoI RGCGCY 2 cut(s) 51, 278
BisI GCNGC 5 cut(s) 139, 142, 273, 314, 363
BlsI GCNGC 5 cut(s) 140, 143, 274, 315, 364
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 2 cut(s) 181, 304
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 181, 304
BmiI GGNNCC 2 cut(s) 49, 306
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 2 cut(s) 199, 255
BpmI CTGGAG 2 cut(s) 146, 304
BpuEI CTTGAG 1 cut(s) 281
BsaHI GRCGYC 2 cut(s) 48, 78
BsaJI CCNNGG 1 cut(s) 112
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 190, 468
Bse118I RCCGGY 2 cut(s) 8, 212
Bse3DI GCAATG 1 cut(s) 462
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 3 cut(s) 127, 190, 468
BseMI GCAATG 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 470
BseXI GCAGC 1 cut(s) 300
BseYI CCCAGC 3 cut(s) 247, 277, 467
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 3 cut(s) 27, 120, 461
BshNI GGYRCC 1 cut(s) 47
BsiSI CCGG 2 cut(s) 9, 213
BslI CCNNNNNNNGG 3 cut(s) 127, 190, 468
BsnI GGCC 3 cut(s) 27, 120, 461
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 7 cut(s) 6, 138, 141, 144, 197, 272, 362
BspANI GGCC 3 cut(s) 27, 120, 461
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 49, 306
BspT107I GGYRCC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 462
BsrFI RCCGGY 2 cut(s) 8, 212
BssAI RCCGGY 2 cut(s) 8, 212
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 1 cut(s) 240
BssNI GRCGYC 2 cut(s) 48, 78
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 337
BstACI GRCGYC 2 cut(s) 48, 78
BstC8I GCNNGC 5 cut(s) 6, 10, 122, 214, 270
BstENI CCTNNNNNAGG 2 cut(s) 125, 188
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 2 cut(s) 51, 278
BstHHI GCGC 3 cut(s) 14, 50, 277
BstKTI GATC 1 cut(s) 243
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 3 cut(s) 54, 150, 274
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 300
BsuRI GGCC 3 cut(s) 27, 120, 461
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 214
Cac8I GCNNGC 5 cut(s) 6, 10, 122, 214, 270
CfoI GCGC 3 cut(s) 14, 50, 277
Cfr10I RCCGGY 2 cut(s) 8, 212
Cfr13I GGNCC 2 cut(s) 181, 304
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 257
CviAII CATG 1 cut(s) 68
CviJI RGCY 9 cut(s) 27, 110, 120, 216, 247, 282, 313, 399, 461
CviKI_1 RGCY 9 cut(s) 27, 110, 120, 216, 247, 282, 313, 399, 461
CviQI GTAC 1 cut(s) 257
DinI GGCGCC 1 cut(s) 49
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
DrdI GACNNNNNNGTC 2 cut(s) 77, 340
DseDI GACNNNNNNGTC 2 cut(s) 77, 340
Eco147I AGGCCT 2 cut(s) 27, 120
Eco47I GGWCC 2 cut(s) 181, 304
EcoNI CCTNNNNNAGG 2 cut(s) 125, 188
EcoO109I RGGNCCY 2 cut(s) 181, 304
EcoRI GAATTC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 112
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
FaeI CATG 1 cut(s) 71
FaiI YATR 1 cut(s) 69
FatI CATG 1 cut(s) 67
FauI CCCGC 2 cut(s) 13, 190
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 5 cut(s) 139, 142, 273, 314, 363
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 5 cut(s) 139, 142, 273, 314, 363
GlaI GCGC 3 cut(s) 13, 49, 276
GluI GCNGC 5 cut(s) 139, 142, 273, 314, 363
GsaI CCCAGC 3 cut(s) 251, 281, 471
GsuI CTGGAG 2 cut(s) 146, 304
HaeII RGCGCY 2 cut(s) 51, 278
HaeIII GGCC 3 cut(s) 27, 120, 461
HapII CCGG 2 cut(s) 9, 213
HgaI GACGC 1 cut(s) 67
HhaI GCGC 3 cut(s) 14, 50, 277
Hin1I GRCGYC 2 cut(s) 48, 78
Hin1II CATG 1 cut(s) 71
Hin6I GCGC 3 cut(s) 12, 48, 275
HinP1I GCGC 3 cut(s) 12, 48, 275
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 3 cut(s) 293, 325, 422
HpaII CCGG 2 cut(s) 9, 213
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 104, 373
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 4 cut(s) 77, 83, 164, 337
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 2 cut(s) 21, 162
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 150, 274
HpySE526I ACGT 2 cut(s) 21, 162
Hsp92I GRCGYC 2 cut(s) 48, 78
Hsp92II CATG 1 cut(s) 71
HspAI GCGC 3 cut(s) 12, 48, 275
KasI GGCGCC 1 cut(s) 47
KroI GCCGGC 2 cut(s) 8, 212
KroNI GCCGGC 2 cut(s) 10, 214
Kzo9I GATC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 2 cut(s) 199, 255
MaeII ACGT 2 cut(s) 21, 162
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MluCI AATT 1 cut(s) 355
Mly113I GGCGCC 1 cut(s) 48
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 399
MreI CGCCGGCG 1 cut(s) 8
MroNI GCCGGC 2 cut(s) 8, 212
MseI TTAA 1 cut(s) 42
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 2 cut(s) 9, 213
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 3 cut(s) 54, 150, 274
NaeI GCCGGC 2 cut(s) 10, 214
NarI GGCGCC 1 cut(s) 48
NdeII GATC 1 cut(s) 240
NgoMIV GCCGGC 2 cut(s) 8, 212
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 2 cut(s) 49, 306
NmuCI GTSAC 1 cut(s) 17
PceI AGGCCT 2 cut(s) 27, 120
PcsI WCGNNNNNNNCGW 3 cut(s) 87, 168, 341
PdiI GCCGGC 2 cut(s) 10, 214
PfeI GAWTC 2 cut(s) 325, 422
PflFI GACNNNGTC 3 cut(s) 77, 164, 292
PkrI GCNGC 5 cut(s) 140, 143, 274, 315, 364
PleI GAGTC 1 cut(s) 301
PluTI GGCGCC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 301
PpuMI RGGWCCY 2 cut(s) 181, 304
Psp5II RGGWCCY 2 cut(s) 181, 304
Psp6I CCWGG 1 cut(s) 112
PspFI CCCAGC 3 cut(s) 247, 277, 467
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 49, 306
PspPI GGNCC 2 cut(s) 181, 304
PspPPI RGGWCCY 2 cut(s) 181, 304
PsyI GACNNNGTC 3 cut(s) 77, 164, 292
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 5 cut(s) 139, 142, 273, 314, 363
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 2 cut(s) 181, 304
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 114
SetI ASST 6 cut(s) 24, 165, 183, 225, 258, 315
SfaNI GCATC 2 cut(s) 199, 255
SfoI GGCGCC 1 cut(s) 49
SgrAI CRCCGGYG 1 cut(s) 8
SinI GGWCC 2 cut(s) 181, 304
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 1 cut(s) 355
SseBI AGGCCT 2 cut(s) 27, 120
SsiI CCGC 7 cut(s) 6, 138, 141, 144, 197, 272, 362
SspDI GGCGCC 1 cut(s) 47
StuI AGGCCT 2 cut(s) 27, 120
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 2 cut(s) 24, 165
TaqI TCGA 3 cut(s) 34, 90, 159
TasI AATT 1 cut(s) 355
TauI GCSGC 4 cut(s) 141, 144, 275, 365
TfiI GAWTC 2 cut(s) 325, 422
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 305
Tth111I GACNNNGTC 3 cut(s) 77, 164, 292
VpaK11BI GGWCC 2 cut(s) 181, 304
XagI CCTNNNNNAGG 2 cut(s) 125, 188
XapI RAATTY 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.