Rh1AG188800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018248
Physical Location & Seq
Reverse (-)
35971445 .. 35971738
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG188800.1

Sequence Viewer

Length: 294 bp
ATGCCTGGACCTCTCTCTACTCCCTTCCCTCTCGTACGACCGCTCGCGGTGGTCGCGCGACACTTCCCGGTCGTCCCCCGGCTCCGGCGACCTGTCACGGCGAGATCTGTGGTCGTGGGAGCGCTCTGGCTTCGAATCGCGGTCCGATCGAGTGCGGTGTTGGCGGTGGTGGTCATCGGAAGCGTCAATTTCGGAGGGGGTGATGAAGGAGAGTTTGGGCTTTTTGGAGGCGTGGGTTTAGGGTTCGCCGTTCAGGGTGTGGTTGTGGTTGTGGTCGGGGGAGGAAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

9.94

Weight (kDa)

12.0

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 43
AccII CGCG 4 cut(s) 47, 56, 58, 140
AciI CCGC 5 cut(s) 41, 47, 140, 155, 164
AfaI GTAC 1 cut(s) 36
AfeI AGCGCT 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 84
AjnI CCWGG 1 cut(s) 4
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
Aor51HI AGCGCT 1 cut(s) 123
AspLEI GCGC 2 cut(s) 58, 124
AspS9I GGNCC 2 cut(s) 8, 142
AsuC2I CCSGG 2 cut(s) 68, 79
AsuHPI GGTGA 1 cut(s) 212
AsuII TTCGAA 1 cut(s) 133
AvaII GGWCC 2 cut(s) 8, 142
BceAI ACGGC 2 cut(s) 114, 233
BciT130I CCWGG 1 cut(s) 6
BcnI CCSGG 2 cut(s) 68, 79
BfoI RGCGCY 1 cut(s) 125
BglII AGATCT 1 cut(s) 104
Bme1390I CCNGG 3 cut(s) 6, 68, 79
Bme18I GGWCC 2 cut(s) 8, 142
BmgT120I GGNCC 2 cut(s) 8, 142
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 3 cut(s) 6, 68, 79
Bpu14I TTCGAA 1 cut(s) 133
BpuMI CCSGG 2 cut(s) 68, 79
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 84
Bsh1236I CGCG 4 cut(s) 47, 56, 58, 140
Bsh1285I CGRYCG 3 cut(s) 41, 72, 149
BsiEI CGRYCG 3 cut(s) 41, 72, 149
BsiSI CCGG 3 cut(s) 68, 79, 85
BsiWI CGTACG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 133
Bsp143I GATC 2 cut(s) 104, 146
BspACI CCGC 5 cut(s) 41, 47, 140, 155, 164
BspFNI CGCG 4 cut(s) 47, 56, 58, 140
BspLI GGNNCC 1 cut(s) 83
BspT104I TTCGAA 1 cut(s) 133
BsrBI CCGCTC 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 2 cut(s) 104, 146
Bst2UI CCWGG 1 cut(s) 6
BstBI TTCGAA 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 45
BstFNI CGCG 4 cut(s) 47, 56, 58, 140
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 2 cut(s) 58, 124
BstKTI GATC 2 cut(s) 107, 149
BstMBI GATC 2 cut(s) 104, 146
BstMCI CGRYCG 3 cut(s) 41, 72, 149
BstMWI GCNNNNNNNGC 2 cut(s) 53, 161
BstNI CCWGG 1 cut(s) 6
BstSCI CCNGG 3 cut(s) 4, 66, 77
BstUI CGCG 4 cut(s) 47, 56, 58, 140
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 45
CfoI GCGC 2 cut(s) 58, 124
Cfr13I GGNCC 2 cut(s) 8, 142
CpoI CGGWCCG 1 cut(s) 142
CseI GACGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 35
CspI CGGWCCG 1 cut(s) 142
CviJI RGCY 3 cut(s) 82, 130, 220
CviKI_1 RGCY 3 cut(s) 82, 130, 220
CviQI GTAC 1 cut(s) 35
DpnI GATC 2 cut(s) 106, 148
DpnII GATC 2 cut(s) 104, 146
Eco47I GGWCC 2 cut(s) 8, 142
Eco47III AGCGCT 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 4
FaqI GGGAC 1 cut(s) 59
GlaI GCGC 2 cut(s) 57, 123
HaeII RGCGCY 1 cut(s) 125
HapII CCGG 3 cut(s) 68, 79, 85
HgaI GACGC 1 cut(s) 172
HhaI GCGC 2 cut(s) 58, 124
Hin6I GCGC 2 cut(s) 56, 122
HinP1I GCGC 2 cut(s) 56, 122
HinfI GANTC 1 cut(s) 135
HpaII CCGG 3 cut(s) 68, 79, 85
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 3 cut(s) 146, 179, 194
HpyAV CCTTC 2 cut(s) 34, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 161
HspAI GCGC 2 cut(s) 56, 122
Kzo9I GATC 2 cut(s) 104, 146
LmnI GCTCC 2 cut(s) 87, 119
LpnPI CCDG 7 cut(s) 18, 81, 92, 98, 105, 112, 239
MaeIII GTNAC 1 cut(s) 94
MalI GATC 2 cut(s) 106, 148
MbiI CCGCTC 1 cut(s) 43
MboI GATC 2 cut(s) 104, 146
MflI RGATCY 1 cut(s) 104
MluCI AATT 1 cut(s) 187
MnlI CCTC 5 cut(s) 21, 39, 188, 221, 275
MspI CCGG 3 cut(s) 68, 79, 85
MspR9I CCNGG 3 cut(s) 6, 68, 79
MvaI CCWGG 1 cut(s) 6
MvnI CGCG 4 cut(s) 47, 56, 58, 140
MwoI GCNNNNNNNGC 2 cut(s) 53, 161
NciI CCSGG 2 cut(s) 68, 79
NdeII GATC 2 cut(s) 104, 146
NlaIV GGNNCC 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 94
NspV TTCGAA 1 cut(s) 133
PfeI GAWTC 1 cut(s) 135
Pfl23II CGTACG 1 cut(s) 34
Ple19I CGATCG 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
PspLI CGTACG 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 2 cut(s) 8, 142
PsuI RGATCY 1 cut(s) 104
PvuI CGATCG 1 cut(s) 149
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
Rsr2I CGGWCCG 1 cut(s) 142
RsrII CGGWCCG 1 cut(s) 142
Sau3AI GATC 2 cut(s) 104, 146
Sau96I GGNCC 2 cut(s) 8, 142
ScrFI CCNGG 3 cut(s) 6, 68, 79
SetI ASST 2 cut(s) 13, 94
SfuI TTCGAA 1 cut(s) 133
SinI GGWCC 2 cut(s) 8, 142
Sse9I AATT 1 cut(s) 187
SsiI CCGC 5 cut(s) 41, 47, 140, 155, 164
StyD4I CCNGG 3 cut(s) 4, 66, 77
TaqI TCGA 2 cut(s) 133, 149
TasI AATT 1 cut(s) 187
TfiI GAWTC 1 cut(s) 135
TseFI GTSAC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 219
VpaK11BI GGWCC 2 cut(s) 8, 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.