RLG00000035230

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012606
Physical Location & Seq
Forward (+)
63233630 .. 63234936
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035230

Sequence Viewer

Length: 801 bp
ATGGTTGAGTTTATCCGGGATCAAATGAAGCAATTCATAGATATTGGAGGCATACCTCCTCTTGAGGATGTTGGCAAGGCTGCTACAGCATATTTTCATCAGTTCCATCCCATGAACCGTGATAAAGATTTTGAATCCACAGTCTACATTTGTGGTTGGATGCCTCATGAAAACAAATATGACGTCATTGAAGTGGGGGATGTGCCTAAAAATGCGCTCTTCAAACAAAATAAGGTTTTCGGAAGTGGAAGCGGCTCCGTCAACGTATTAAGCGAGTTAAAATCGTTGAAAGCACCAATAGACGTGAACATCGTAAAGAATAAATTGATAAGAGCAACACTCACAGATCCTTACACTGGTGGACGTCTTCAAGTTTATTCTTTGAAGGATGGGACCTGTGTGTCCAAGTATGAAGGAAATTTGATAAATGAGCGGCACAACCCTGAGTATGCAGATGGAAAAAGTATGTTTGTTATAATTCAGACGAGACATGCCGCAATCTTGAGTCGGCAAGACTTAATGGAAGTCCTAGAAAGATTCGATACAAGTGTTCATCATATCCATTGGTTATGCTTTGTCAAGAGCTTTCTAGTGTATCGAGTGATACTCTCATCACCAGAATGTTGTCATAACTGGTTCGACTCCTGCAAAGTGTTCAAAGAACCTATTCGGCGTCAAAGATATTCCATCAAAGCTGGTTCCTGTGATTATTACCTTGGATATGCTAGGAGTGAGATACTAAATCGAGCACTGAAGATGGAGTCATTTGATGATTTGGCAGACCCTATAGGATTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

267

Amino Acids

30.5

Weight (kDa)

6.75

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
AasI GACNNNNNNGTC 1 cut(s) 400
AatII GACGTC 2 cut(s) 186, 367
AccBSI CCGCTC 1 cut(s) 433
AccI GTMKAC 1 cut(s) 144
AciI CCGC 3 cut(s) 252, 433, 495
AclWI GGATC 2 cut(s) 27, 341
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 773
AcyI GRCGYC 3 cut(s) 183, 364, 673
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 7 cut(s) 134, 191, 223, 289, 371, 385, 658
AjiI CACGTC 1 cut(s) 304
AluBI AGCT 2 cut(s) 585, 695
AluI AGCT 2 cut(s) 585, 695
Alw21I GWGCWC 1 cut(s) 751
Alw26I GTCTC 1 cut(s) 481
AlwI GGATC 2 cut(s) 27, 341
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 418
ArsI GACNNNNNNTTYG 2 cut(s) 168, 200
Asp700I GAANNNNTTC 2 cut(s) 32, 666
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 393
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 606
AvaII GGWCC 1 cut(s) 393
BaeI ACNNNNGTAYC 2 cut(s) 534, 567
BbsI GAAGAC 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 751
BbvI GCAGC 1 cut(s) 67
BccI CCATC 5 cut(s) 114, 383, 449, 695, 751
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 481
BfaI CTAG 3 cut(s) 530, 590, 726
BfmI CTRYAG 2 cut(s) 84, 786
BisI GCNGC 4 cut(s) 81, 253, 434, 495
BlsI GCNGC 4 cut(s) 82, 254, 435, 496
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 393
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 3 cut(s) 256, 394, 700
BmrFI CCNGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 359
BplI GAGNNNNNCTC 4 cut(s) 324, 356, 591, 623
BpuEI CTTGAG 2 cut(s) 83, 523
BpuMI CCSGG 1 cut(s) 17
BsaHI GRCGYC 3 cut(s) 183, 364, 673
BsaJI CCNNGG 1 cut(s) 715
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse1I ACTGG 2 cut(s) 361, 638
BseDI CCNNGG 1 cut(s) 715
BseGI GGATG 5 cut(s) 73, 106, 165, 205, 394
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 2 cut(s) 361, 638
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 751
BsiSI CCGG 1 cut(s) 16
BslFI GGGAC 1 cut(s) 406
BslI CCNNNNNNNGG 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 481
BsmFI GGGAC 1 cut(s) 406
Bsp1286I GDGCHC 1 cut(s) 751
Bsp143I GATC 2 cut(s) 19, 346
BspACI CCGC 3 cut(s) 252, 433, 495
BspCNI CTCAG 1 cut(s) 436
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 3 cut(s) 256, 394, 700
BspPI GGATC 2 cut(s) 27, 341
BspQI GCTCTTC 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 433
BsrI ACTGG 2 cut(s) 361, 638
BssECI CCNNGG 1 cut(s) 715
BssMI GATC 2 cut(s) 19, 346
BssNI GRCGYC 3 cut(s) 183, 364, 673
BssT1I CCWWGG 1 cut(s) 715
Bst4CI ACNGT 2 cut(s) 119, 142
Bst6I CTCTTC 1 cut(s) 224
BstACI GRCGYC 3 cut(s) 183, 364, 673
BstDEI CTNAG 1 cut(s) 444
BstF5I GGATG 5 cut(s) 73, 106, 165, 205, 394
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 2 cut(s) 22, 349
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 2 cut(s) 19, 346
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 15
BstSFI CTRYAG 2 cut(s) 84, 786
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 359
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 5 cut(s) 73, 106, 165, 205, 394
BtsIMutI CAGTG 2 cut(s) 354, 749
CciI TCATGA 1 cut(s) 166
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 393
CseI GACGC 1 cut(s) 662
CviAII CATG 3 cut(s) 112, 167, 491
CviJI RGCY 4 cut(s) 80, 255, 585, 695
CviKI_1 RGCY 4 cut(s) 80, 255, 585, 695
DdeI CTNAG 1 cut(s) 444
DpnI GATC 2 cut(s) 21, 348
DpnII GATC 2 cut(s) 19, 346
DrdI GACNNNNNNGTC 1 cut(s) 400
DseDI GACNNNNNNGTC 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 715
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 773
EcoO109I RGGNCCY 1 cut(s) 393
EcoT14I CCWWGG 1 cut(s) 715
ErhI CCWWGG 1 cut(s) 715
FaeI CATG 3 cut(s) 115, 170, 494
FaqI GGGAC 1 cut(s) 406
FatI CATG 3 cut(s) 111, 166, 490
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 4 cut(s) 81, 253, 434, 495
FokI GGATG 5 cut(s) 80, 93, 172, 212, 401
Fsp4HI GCNGC 4 cut(s) 81, 253, 434, 495
FspBI CTAG 3 cut(s) 530, 590, 726
GlaI GCGC 1 cut(s) 216
GluI GCNGC 4 cut(s) 81, 253, 434, 495
HapII CCGG 1 cut(s) 16
HgaI GACGC 1 cut(s) 662
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 3 cut(s) 183, 364, 673
Hin1II CATG 3 cut(s) 115, 170, 494
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 5 cut(s) 134, 505, 537, 641, 761
HpaII CCGG 1 cut(s) 16
HphI GGTGA 1 cut(s) 606
Hpy166II GTNNAC 4 cut(s) 145, 262, 307, 362
Hpy188I TCNGA 2 cut(s) 242, 483
Hpy188III TCNNGA 4 cut(s) 62, 167, 502, 580
Hpy8I GTNNAC 4 cut(s) 145, 262, 307, 362
HpyAV CCTTC 2 cut(s) 379, 407
HpyCH4III ACNGT 2 cut(s) 119, 142
HpyCH4IV ACGT 4 cut(s) 183, 264, 303, 364
HpyCH4V TGCA 2 cut(s) 452, 648
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 4 cut(s) 183, 264, 303, 364
Hsp92I GRCGYC 3 cut(s) 183, 364, 673
Hsp92II CATG 3 cut(s) 115, 170, 494
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 2 cut(s) 19, 346
LguI GCTCTTC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 9 cut(s) 29, 342, 409, 456, 619, 630, 658, 681, 715
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 150
MaeI CTAG 3 cut(s) 530, 590, 726
MaeII ACGT 4 cut(s) 183, 264, 303, 364
MalI GATC 2 cut(s) 21, 348
MbiI CCGCTC 1 cut(s) 433
MboI GATC 2 cut(s) 19, 346
MboII GAAGA 3 cut(s) 211, 359, 766
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 751
MluCI AATT 4 cut(s) 32, 323, 418, 477
MlyI GAGTC 3 cut(s) 514, 635, 770
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 5 cut(s) 41, 58, 66, 69, 174
MroXI GAANNNNTTC 2 cut(s) 32, 666
MseI TTAA 3 cut(s) 269, 278, 518
MslI CAYNNNNRTG 2 cut(s) 191, 619
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 1 cut(s) 17
NdeII GATC 2 cut(s) 19, 346
NlaIII CATG 3 cut(s) 115, 170, 494
NlaIV GGNNCC 3 cut(s) 256, 394, 700
NspI RCATGY 1 cut(s) 494
PagI TCATGA 1 cut(s) 166
PciSI GCTCTTC 1 cut(s) 224
PcsI WCGNNNNNNNCGW 2 cut(s) 270, 309
PdmI GAANNNNTTC 2 cut(s) 32, 666
PfeI GAWTC 2 cut(s) 134, 537
PfoI TCCNGGA 1 cut(s) 15
PkrI GCNGC 4 cut(s) 82, 254, 435, 496
PleI GAGTC 3 cut(s) 513, 635, 769
PpsI GAGTC 3 cut(s) 513, 635, 769
PpuMI RGGWCCY 1 cut(s) 393
PsiI TTATAA 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 393
PspN4I GGNNCC 3 cut(s) 256, 394, 700
PspPI GGNCC 1 cut(s) 393
PspPPI RGGWCCY 1 cut(s) 393
PsuI RGATCY 1 cut(s) 346
RseI CAYNNNNRTG 2 cut(s) 191, 619
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 3 cut(s) 269, 278, 518
SatI GCNGC 4 cut(s) 81, 253, 434, 495
Sau3AI GATC 2 cut(s) 19, 346
Sau96I GGNCC 1 cut(s) 393
SchI GAGTC 3 cut(s) 514, 635, 770
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 1 cut(s) 751
SfaNI GCATC 1 cut(s) 150
SfcI CTRYAG 2 cut(s) 84, 786
SinI GGWCC 1 cut(s) 393
SmiMI CAYNNNNRTG 2 cut(s) 191, 619
SmlI CTYRAG 2 cut(s) 62, 502
SmoI CTYRAG 2 cut(s) 62, 502
Sse9I AATT 4 cut(s) 32, 323, 418, 477
SsiI CCGC 3 cut(s) 252, 433, 495
SspMI CTAG 3 cut(s) 530, 590, 726
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 715
TaaI ACNGT 2 cut(s) 119, 142
TaiI ACGT 4 cut(s) 186, 267, 306, 367
TaqI TCGA 4 cut(s) 540, 598, 639, 745
TasI AATT 4 cut(s) 32, 323, 418, 477
TauI GCSGC 3 cut(s) 255, 436, 497
TfiI GAWTC 2 cut(s) 134, 537
Tru1I TTAA 3 cut(s) 269, 278, 518
Tru9I TTAA 3 cut(s) 269, 278, 518
TscAI CASTG 2 cut(s) 361, 756
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 7 cut(s) 25, 41, 86, 128, 183, 426, 542
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 2 cut(s) 361, 756
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 1 cut(s) 418
XceI RCATGY 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 144
XmnI GAANNNNTTC 2 cut(s) 32, 666
XspI CTAG 3 cut(s) 530, 590, 726
ZraI GACGTC 2 cut(s) 184, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.