Rh5AG381800

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012606
Physical Location & Seq
Forward (+)
65556007 .. 65557448
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG381800.1

Sequence Viewer

Length: 807 bp
ATGGCCTATGAGATTTTGGAGAGCGAAATTGAAGATAAGTTTGTAGAAATCATCAAGGGAGTGTATGCAACCCTTTGCGGAGATGGAAAGAGGTGCAAGGAGATGGTTAAGTATGTCCGGGATCAAATGAAGCAATTCATAGATATTGGAGGCATACCTACTCTTAAACATATTGGCATGGCTGCAACAGCATATTTTCATCAGTTCTATCCTATGAACCGTGAAAAGGAACTTGAATCCAAAGTCTACATTTGTGGTTGGATACCTCATCTAAACAAATATGATGTTATTGAAGTGGGGGATGTGCCTGAAAATGCTCTCTTGAAAGAAGAAAAGGTTTTCGGAAGTGGTAGCGGCGCCGACAACGATGATACTTGTGTGTGCAAGTATGAAGGATATATGATAAATGAGTTGCATAACCCTGAGTATGCAAACATACTTTTTGATGGAAAAAGTATGTTTGTTATAATTCAGACAATACATGCCGTAATCGTGAGTCCGCAAGACATAAAGTCAATCCTAAAAAGATTCAATACAAGTGTTCATGTCCATTGGTTATGCTTTGTGAAGAGCTTTTTAGTATACCGAGTGATACTATCATCACCAGAATGTTGCGATAGCTGGTTTGGTTCATGTGAAGTGTTCAAAGAACCTATTCGGCGTCAAAGACATTCCACCCCAGACGGTTCTTGTGACTATTACCTTGGATATGCTGGTAGCGAGCTACTACTTCGAGCACTAAAGATGAAGTCATTTGATGATTTAGCTGATTCTAATCTTCCTCTAGATGACCATACTGCCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

268

Amino Acids

30.57

Weight (kDa)

5.39

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AccB1I GGYRCC 1 cut(s) 356
AccI GTMKAC 2 cut(s) 246, 582
AciI CCGC 4 cut(s) 78, 354, 500, 801
AclWI GGATC 1 cut(s) 129
AcyI GRCGYC 2 cut(s) 357, 661
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 6 cut(s) 32, 236, 293, 325, 532, 646
AhdI GACNNNNNGTC 1 cut(s) 511
AluBI AGCT 4 cut(s) 573, 621, 724, 767
AluI AGCT 4 cut(s) 573, 621, 724, 767
Alw21I GWGCWC 1 cut(s) 739
AlwI GGATC 1 cut(s) 129
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 182
Asp700I GAANNNNTTC 2 cut(s) 134, 654
AspLEI GCGC 1 cut(s) 359
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 594
BaeI ACNNNNGTAYC 2 cut(s) 363, 396
BanI GGYRCC 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 739
BbvI GCAGC 1 cut(s) 169
BccI CCATC 3 cut(s) 77, 97, 440
BceAI ACGGC 1 cut(s) 470
BciVI GTATCC 1 cut(s) 255
BcnI CCSGG 1 cut(s) 119
BfaI CTAG 1 cut(s) 785
BfoI RGCGCY 1 cut(s) 360
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 3 cut(s) 183, 355, 801
BlsI GCNGC 3 cut(s) 184, 356, 802
Bme1390I CCNGG 1 cut(s) 119
BmeRI GACNNNNNGTC 1 cut(s) 511
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 119
BsaBI GATNNNNATC 1 cut(s) 774
BsaHI GRCGYC 2 cut(s) 357, 661
BsaJI CCNNGG 1 cut(s) 703
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse8I GATNNNNATC 1 cut(s) 774
BseDI CCNNGG 1 cut(s) 703
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 414
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 739
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 226
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 739
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 4 cut(s) 78, 354, 500, 801
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 358
BspPI GGATC 1 cut(s) 129
BspQI GCTCTTC 1 cut(s) 563
BspT107I GGYRCC 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 703
BssMI GATC 1 cut(s) 121
BssNAI GTATAC 1 cut(s) 583
BssNI GRCGYC 2 cut(s) 357, 661
BssT1I CCWWGG 1 cut(s) 703
Bst1107I GTATAC 1 cut(s) 583
Bst4CI ACNGT 2 cut(s) 221, 686
Bst6I CTCTTC 1 cut(s) 563
BstACI GRCGYC 2 cut(s) 357, 661
BstC8I GCNNGC 1 cut(s) 722
BstDEI CTNAG 1 cut(s) 423
BstF5I GGATG 1 cut(s) 307
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 169
BstZ17I GTATAC 1 cut(s) 583
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 722
CfoI GCGC 1 cut(s) 359
CseI GACGC 1 cut(s) 650
CviAII CATG 4 cut(s) 178, 482, 545, 633
CviJI RGCY 6 cut(s) 5, 182, 573, 621, 724, 767
CviKI_1 RGCY 6 cut(s) 5, 182, 573, 621, 724, 767
DdeI CTNAG 1 cut(s) 423
DinI GGCGCC 1 cut(s) 358
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
DriI GACNNNNNGTC 1 cut(s) 511
Eam1104I CTCTTC 1 cut(s) 563
Eam1105I GACNNNNNGTC 1 cut(s) 511
EarI CTCTTC 1 cut(s) 563
Eco130I CCWWGG 1 cut(s) 703
EcoT14I CCWWGG 1 cut(s) 703
EgeI GGCGCC 1 cut(s) 358
EheI GGCGCC 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 703
FaeI CATG 4 cut(s) 181, 485, 548, 636
FatI CATG 4 cut(s) 177, 481, 544, 632
FblI GTMKAC 2 cut(s) 246, 582
Fnu4HI GCNGC 3 cut(s) 183, 355, 801
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 3 cut(s) 183, 355, 801
FspBI CTAG 1 cut(s) 785
GlaI GCGC 1 cut(s) 358
GluI GCNGC 3 cut(s) 183, 355, 801
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 118
HgaI GACGC 1 cut(s) 650
HhaI GCGC 1 cut(s) 359
Hin1I GRCGYC 2 cut(s) 357, 661
Hin1II CATG 4 cut(s) 181, 485, 548, 636
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HinfI GANTC 4 cut(s) 236, 496, 528, 770
HpaII CCGG 1 cut(s) 118
HphI GGTGA 1 cut(s) 594
Hpy166II GTNNAC 2 cut(s) 247, 583
Hpy188I TCNGA 2 cut(s) 344, 474
Hpy188III TCNNGA 3 cut(s) 322, 493, 785
Hpy8I GTNNAC 2 cut(s) 247, 583
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 2 cut(s) 221, 686
HpyCH4V TGCA 6 cut(s) 68, 96, 185, 384, 415, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 423
Hsp92I GRCGYC 2 cut(s) 357, 661
Hsp92II CATG 4 cut(s) 181, 485, 548, 636
HspAI GCGC 1 cut(s) 357
KasI GGCGCC 1 cut(s) 356
Kzo9I GATC 1 cut(s) 121
LguI GCTCTTC 1 cut(s) 563
LpnPI CCDG 7 cut(s) 131, 321, 435, 607, 618, 693, 699
Lsp1109I GCAGC 1 cut(s) 169
MaeI CTAG 1 cut(s) 785
MaeIII GTNAC 1 cut(s) 692
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 4 cut(s) 44, 341, 580, 770
MhlI GDGCHC 1 cut(s) 739
MluCI AATT 3 cut(s) 27, 134, 468
Mly113I GGCGCC 1 cut(s) 357
MlyI GAGTC 1 cut(s) 505
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 4 cut(s) 84, 143, 276, 792
MroXI GAANNNNTTC 2 cut(s) 134, 654
MseI TTAA 2 cut(s) 108, 165
MslI CAYNNNNRTG 1 cut(s) 607
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 188
NarI GGCGCC 1 cut(s) 357
NciI CCSGG 1 cut(s) 119
NdeII GATC 1 cut(s) 121
NlaIII CATG 4 cut(s) 181, 485, 548, 636
NlaIV GGNNCC 1 cut(s) 358
NmuCI GTSAC 1 cut(s) 692
NspI RCATGY 1 cut(s) 485
PciSI GCTCTTC 1 cut(s) 563
PdmI GAANNNNTTC 2 cut(s) 134, 654
PfeI GAWTC 3 cut(s) 236, 528, 770
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 3 cut(s) 184, 356, 802
PleI GAGTC 1 cut(s) 504
PluTI GGCGCC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 504
PsiI TTATAA 1 cut(s) 467
PspN4I GGNNCC 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 607
SapI GCTCTTC 1 cut(s) 563
SaqAI TTAA 2 cut(s) 108, 165
SatI GCNGC 3 cut(s) 183, 355, 801
Sau3AI GATC 1 cut(s) 121
SchI GAGTC 1 cut(s) 505
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 1 cut(s) 739
SfoI GGCGCC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 607
Sse9I AATT 3 cut(s) 27, 134, 468
SsiI CCGC 4 cut(s) 78, 354, 500, 801
SspDI GGCGCC 1 cut(s) 356
SspMI CTAG 1 cut(s) 785
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 2 cut(s) 221, 686
TaqI TCGA 1 cut(s) 733
TasI AATT 3 cut(s) 27, 134, 468
TauI GCSGC 2 cut(s) 357, 803
TfiI GAWTC 3 cut(s) 236, 528, 770
Tru1I TTAA 2 cut(s) 108, 165
Tru9I TTAA 2 cut(s) 108, 165
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 8 cut(s) 127, 143, 188, 230, 405, 533, 621, 761
XbaI TCTAGA 1 cut(s) 784
XceI RCATGY 1 cut(s) 485
XmiI GTMKAC 2 cut(s) 246, 582
XmnI GAANNNNTTC 2 cut(s) 134, 654
XspI CTAG 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.