Rh5CG417600

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012606
Physical Location & Seq
Forward (+)
56994074 .. 56995567
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG417600.1

Sequence Viewer

Length: 861 bp
ATGGTTTACTTATTTAATGTTCGCTTTTCAGCAAACGACCCAAATAACAAGAGGACGGCCTATGAGATTTTGGAGAGCGAAATTGAAGATAAGTTTGTAGAAATCATCAAGGGAGTGTATGCAACCCTTTGCGGAGATGGAAAGAGGTGCAAGGAGATGGTGAAGTATGTCCAGGATCAAATGAAGCAATACATAGATATTGGAGGCATGCCTACTCTTAAACATATTGGCATGGCTGCAACAGAATATTTTCATCAGTTCTGTCCTATGAACCGTGAAAAGGAACTTGAATCCAAAGTCTACATTTGTGGTTGGATACCTCATCTAAACAAATATGATGTTATTGAAGTGGGGGATCTGCCTGAAAATGCTCTCTTGAAAGAAGAAAAGGTTTTCGGAAGTGGTAGCGGCGCCGGCAACGATGATACTTGTGTGTGCAAGTATGAAGGATATATGATAAATGAGCTGCATAACCCTGAGTATGCAAACAAACTTTTTGATGGAAAAAGTATGTTTGTTATAATTCAGACAATACATGCCGTAATCGTGAGTCCGCAAGACATAATGTCAATCCTAAAAAGATTCAATACAAGTGTTCATGTCCATTGGTTATGCTTTGTGAAGAGCTTTTTAGTATACCGAGTGATACTATCATCACCAGAATGTTTCGATAGCTGGTTTGGTTCATGTGAAGTGTTCAAAGAACCTATTCGGCGTCAAAGACATTCCACCCCAGACGGTTCTTGTGACTATTACCTTGGATATGCTGGTAGCGAGCTACTACTTCGAGCACTAAAGATGAAGTCATTTGATGATTTAGCTGACTCTAATCTTCCTCTAGATGACCATACTGCCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

286

Amino Acids

32.73

Weight (kDa)

5.51

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 410
AccI GTMKAC 2 cut(s) 300, 636
AciI CCGC 4 cut(s) 132, 408, 554, 855
AclWI GGATC 2 cut(s) 183, 363
AcyI GRCGYC 2 cut(s) 411, 715
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 6 cut(s) 86, 290, 347, 379, 586, 700
AhdI GACNNNNNGTC 1 cut(s) 565
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 5 cut(s) 466, 627, 675, 778, 821
AluI AGCT 5 cut(s) 466, 627, 675, 778, 821
Alw21I GWGCWC 1 cut(s) 793
AlwI GGATC 2 cut(s) 183, 363
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 236, 466
Asp700I GAANNNNTTC 2 cut(s) 249, 708
AspLEI GCGC 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 172, 648
BaeI ACNNNNGTAYC 2 cut(s) 417, 450
BanI GGYRCC 1 cut(s) 410
Bbv12I GWGCWC 1 cut(s) 793
BbvI GCAGC 2 cut(s) 223, 453
BccI CCATC 3 cut(s) 131, 151, 494
BceAI ACGGC 2 cut(s) 72, 524
BciT130I CCWGG 1 cut(s) 173
BciVI GTATCC 1 cut(s) 309
BfaI CTAG 1 cut(s) 839
BfoI RGCGCY 1 cut(s) 414
BfuI GTATCC 1 cut(s) 309
BisI GCNGC 4 cut(s) 237, 409, 467, 855
BlsI GCNGC 4 cut(s) 238, 410, 468, 856
Bme1390I CCNGG 1 cut(s) 173
BmeRI GACNNNNNGTC 1 cut(s) 565
BmiI GGNNCC 1 cut(s) 412
BmrFI CCNGG 1 cut(s) 173
BsaHI GRCGYC 2 cut(s) 411, 715
BsaJI CCNNGG 1 cut(s) 757
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 413
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 757
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 468
BseXI GCAGC 2 cut(s) 223, 453
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 410
BsiHKAI GWGCWC 1 cut(s) 793
BsiSI CCGG 1 cut(s) 414
BslI CCNNNNNNNGG 1 cut(s) 280
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 793
Bsp143I GATC 2 cut(s) 175, 355
BspACI CCGC 4 cut(s) 132, 408, 554, 855
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 412
BspPI GGATC 2 cut(s) 183, 363
BspQI GCTCTTC 1 cut(s) 617
BspT107I GGYRCC 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 413
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 757
BssMI GATC 2 cut(s) 175, 355
BssNAI GTATAC 1 cut(s) 637
BssNI GRCGYC 2 cut(s) 411, 715
BssT1I CCWWGG 1 cut(s) 757
Bst1107I GTATAC 1 cut(s) 637
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 275, 740
Bst6I CTCTTC 1 cut(s) 617
BstACI GRCGYC 2 cut(s) 411, 715
BstC8I GCNNGC 3 cut(s) 209, 415, 776
BstDEI CTNAG 1 cut(s) 477
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 1 cut(s) 413
BstKTI GATC 2 cut(s) 178, 358
BstMBI GATC 2 cut(s) 175, 355
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 2 cut(s) 211, 539
BstSCI CCNGG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 223, 453
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BstZ17I GTATAC 1 cut(s) 637
BsuI GTATCC 1 cut(s) 309
BsuRI GGCC 1 cut(s) 59
Cac8I GCNNGC 3 cut(s) 209, 415, 776
CfoI GCGC 1 cut(s) 413
Cfr10I RCCGGY 1 cut(s) 413
CseI GACGC 1 cut(s) 704
CviAII CATG 5 cut(s) 208, 232, 536, 599, 687
CviJI RGCY 7 cut(s) 59, 236, 466, 627, 675, 778, 821
CviKI_1 RGCY 7 cut(s) 59, 236, 466, 627, 675, 778, 821
DdeI CTNAG 1 cut(s) 477
DinI GGCGCC 1 cut(s) 412
DpnI GATC 2 cut(s) 177, 357
DpnII GATC 2 cut(s) 175, 355
DriI GACNNNNNGTC 1 cut(s) 565
Eam1104I CTCTTC 1 cut(s) 617
Eam1105I GACNNNNNGTC 1 cut(s) 565
EarI CTCTTC 1 cut(s) 617
Eco130I CCWWGG 1 cut(s) 757
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 757
EgeI GGCGCC 1 cut(s) 412
EheI GGCGCC 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 757
FaeI CATG 5 cut(s) 211, 235, 539, 602, 690
FatI CATG 5 cut(s) 207, 231, 535, 598, 686
FblI GTMKAC 2 cut(s) 300, 636
Fnu4HI GCNGC 4 cut(s) 237, 409, 467, 855
Fsp4HI GCNGC 4 cut(s) 237, 409, 467, 855
FspBI CTAG 1 cut(s) 839
GlaI GCGC 1 cut(s) 412
GluI GCNGC 4 cut(s) 237, 409, 467, 855
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 414
HgaI GACGC 1 cut(s) 704
HhaI GCGC 1 cut(s) 413
Hin1I GRCGYC 2 cut(s) 411, 715
Hin1II CATG 5 cut(s) 211, 235, 539, 602, 690
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HinfI GANTC 4 cut(s) 290, 550, 582, 824
HpaII CCGG 1 cut(s) 414
HphI GGTGA 2 cut(s) 172, 648
Hpy166II GTNNAC 3 cut(s) 7, 301, 637
Hpy188I TCNGA 2 cut(s) 398, 528
Hpy188III TCNNGA 3 cut(s) 376, 547, 839
Hpy8I GTNNAC 3 cut(s) 7, 301, 637
HpyAV CCTTC 1 cut(s) 440
HpyCH4III ACNGT 2 cut(s) 275, 740
HpyCH4V TGCA 6 cut(s) 122, 150, 239, 438, 469, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpyF3I CTNAG 1 cut(s) 477
Hsp92I GRCGYC 2 cut(s) 411, 715
Hsp92II CATG 5 cut(s) 211, 235, 539, 602, 690
HspAI GCGC 1 cut(s) 411
KasI GGCGCC 1 cut(s) 410
KroI GCCGGC 1 cut(s) 413
KroNI GCCGGC 1 cut(s) 415
Kzo9I GATC 2 cut(s) 175, 355
LguI GCTCTTC 1 cut(s) 617
LpnPI CCDG 9 cut(s) 158, 185, 375, 427, 489, 661, 672, 747, 753
Lsp1109I GCAGC 2 cut(s) 223, 453
MaeI CTAG 1 cut(s) 839
MaeIII GTNAC 1 cut(s) 746
MalI GATC 2 cut(s) 177, 357
MboI GATC 2 cut(s) 175, 355
MboII GAAGA 4 cut(s) 98, 395, 634, 824
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 1 cut(s) 793
MluCI AATT 2 cut(s) 81, 522
Mly113I GGCGCC 1 cut(s) 411
MlyI GAGTC 2 cut(s) 559, 818
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 5 cut(s) 45, 138, 197, 330, 846
MroNI GCCGGC 1 cut(s) 413
MroXI GAANNNNTTC 2 cut(s) 249, 708
MseI TTAA 2 cut(s) 15, 219
MslI CAYNNNNRTG 1 cut(s) 661
MspI CCGG 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 414
NaeI GCCGGC 1 cut(s) 415
NarI GGCGCC 1 cut(s) 411
NdeII GATC 2 cut(s) 175, 355
NgoMIV GCCGGC 1 cut(s) 413
NlaIII CATG 5 cut(s) 211, 235, 539, 602, 690
NlaIV GGNNCC 1 cut(s) 412
NmuCI GTSAC 1 cut(s) 746
NspI RCATGY 2 cut(s) 211, 539
PaeI GCATGC 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 617
PdiI GCCGGC 1 cut(s) 415
PdmI GAANNNNTTC 2 cut(s) 249, 708
PfeI GAWTC 2 cut(s) 290, 582
PfoI TCCNGGA 1 cut(s) 171
PkrI GCNGC 4 cut(s) 238, 410, 468, 856
PleI GAGTC 2 cut(s) 558, 818
PluTI GGCGCC 1 cut(s) 414
PpsI GAGTC 2 cut(s) 558, 818
PsiI TTATAA 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 412
PsuI RGATCY 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 661
SapI GCTCTTC 1 cut(s) 617
SaqAI TTAA 2 cut(s) 15, 219
SatI GCNGC 4 cut(s) 237, 409, 467, 855
Sau3AI GATC 2 cut(s) 175, 355
SchI GAGTC 2 cut(s) 559, 818
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 793
SfoI GGCGCC 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 661
SphI GCATGC 1 cut(s) 211
Sse9I AATT 2 cut(s) 81, 522
SsiI CCGC 4 cut(s) 132, 408, 554, 855
SspDI GGCGCC 1 cut(s) 410
SspI AATATT 1 cut(s) 248
SspMI CTAG 1 cut(s) 839
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 1 cut(s) 757
TaaI ACNGT 2 cut(s) 275, 740
TaqI TCGA 2 cut(s) 669, 787
TasI AATT 2 cut(s) 81, 522
TauI GCSGC 2 cut(s) 411, 857
TfiI GAWTC 2 cut(s) 290, 582
Tru1I TTAA 2 cut(s) 15, 219
Tru9I TTAA 2 cut(s) 15, 219
TseFI GTSAC 1 cut(s) 746
TseI GCWGC 2 cut(s) 236, 466
Tsp45I GTSAC 1 cut(s) 746
TspDTI ATGAA 7 cut(s) 197, 242, 284, 459, 587, 675, 815
XbaI TCTAGA 1 cut(s) 838
XceI RCATGY 2 cut(s) 211, 539
XmiI GTMKAC 2 cut(s) 300, 636
XmnI GAANNNNTTC 2 cut(s) 249, 708
XspI CTAG 1 cut(s) 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.