Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0012606

Physical Location & Seq

Genomic Coordinates Reverse (-)

27085034 .. 27089947

Gene Structure 4914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTTAAGTATGTCCGTGATCAAATGAAGCAATTCATAGGTATTGGAGGCATACCTACTCTTAAACATGTTGGCGAGGCTGCAACAGCATATTTTCATCAGTTCTATCCTATGGACCGTGAAAAAGAACTTGAATCCAAAGTCTACATTTGTGGTTGGATACCTCATCTAAACAAATATGACGTTATTGAAGTGGGGGATGTGCCTAAAAATGCTCTCTTGAAAGAAGAAAAGGTTTTCGGAAGTGGTAGCGGCTCCGACAACGATGATACGTGTGTGTGCAAGTATGAAGGATATATGATAAATGAGCTGCATAACCCTGAGTATGCAAACATACTTTTTGATGGAAAAAGTATGTTTGTTATAATTCAGACAATACATGCCGTAATCGTGAGTCCGCAAGACATAATGTCAATCCTAAAAAGATTCGATACAAGTGTTGTTCATGTCCATTGGTTATGCTTTGTCAAGAGCTTTTTAGTATACCGAGTGATACTCTCATCACCAGAATGTTGCGATAGCTGGTTTGGTTCATGTGAAGTGTTCAAAGAATCTATTCGGCGTCAAAGACATTCCACCCAAGACGGTTCTTGTGACTATTACCTTGGATATGCTGATAGCGAGCTACTACTTCGAGCACTGAAGATGAAGTCATTTGATGATTTAGCTGACTCTAATCTTCCTCTAGATGACCATACTGCCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

235

Amino Acids

26.83

Weight (kDa)

5.44

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12130 FvH4_4g12130 FvH4_4g12130 FvH4_4g12130 FvH4_4g12130 FvH4_4g12130 FvH4_4g12130 FvH4_4g12130 FvH4_4g12130 FvH4_4g12130 FvH4_4g12130 FvH4_4g12130
rosa_laevigata	RLG00000035230
rosa_multiflora	Rmu_sc0000367.1_g000135 Rmu_sc0003525.1_g000003
rosa_roxburghii	Rroxscaffold_1G00022000
rosa_samantha	Rh5AG381800 Rh5CG417600 Rh5DG408700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
AccI	GTMKAC	2 cut(s)	144, 483
AciI	CCGC	3 cut(s)	252, 398, 702
AcuI	CTGAAG	1 cut(s)	662
AcyI	GRCGYC	1 cut(s)	562
AflIII	ACRYGT	2 cut(s)	67, 272
AgsI	TTSAA	4 cut(s)	134, 191, 223, 547
AhdI	GACNNNNNGTC	1 cut(s)	409
AluBI	AGCT	5 cut(s)	310, 474, 522, 625, 668
AluI	AGCT	5 cut(s)	310, 474, 522, 625, 668
Alw21I	GWGCWC	1 cut(s)	640
ApeKI	GCWGC	2 cut(s)	80, 310
Asp700I	GAANNNNTTC	2 cut(s)	32, 555
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	495
AvaII	GGWCC	1 cut(s)	115
BaeI	ACNNNNGTAYC	4 cut(s)	261, 294, 423, 456
Bbv12I	GWGCWC	1 cut(s)	640
BbvI	GCAGC	2 cut(s)	67, 297
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	368
BciVI	GTATCC	1 cut(s)	153
BclI	TGATCA	1 cut(s)	19
BfaI	CTAG	1 cut(s)	686
BfuI	GTATCC	1 cut(s)	153
BisI	GCNGC	4 cut(s)	81, 253, 311, 702
BlsI	GCNGC	4 cut(s)	82, 254, 312, 703
Bme18I	GGWCC	1 cut(s)	115
BmeRI	GACNNNNNGTC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	480, 512
BsaAI	YACGTR	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	562
BsaJI	CCNNGG	1 cut(s)	604
BseDI	CCNNGG	1 cut(s)	604
BseGI	GGATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	67, 297
BsiHKAI	GWGCWC	1 cut(s)	640
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	3 cut(s)	252, 398, 702
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	604
BssMI	GATC	1 cut(s)	19
BssNAI	GTATAC	1 cut(s)	484
BssNI	GRCGYC	1 cut(s)	562
BssT1I	CCWWGG	1 cut(s)	604
Bst1107I	GTATAC	1 cut(s)	484
Bst4CI	ACNGT	2 cut(s)	119, 587
BstACI	GRCGYC	1 cut(s)	562
BstBAI	YACGTR	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	2 cut(s)	71, 383
BstV1I	GCAGC	2 cut(s)	67, 297
BstZ17I	GTATAC	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	638
Cac8I	GCNNGC	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	1 cut(s)	551
CviAII	CATG	4 cut(s)	68, 380, 446, 534
CviJI	RGCY	7 cut(s)	80, 255, 310, 474, 522, 625, 668
CviKI_1	RGCY	7 cut(s)	80, 255, 310, 474, 522, 625, 668
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DriI	GACNNNNNGTC	1 cut(s)	409
Eam1105I	GACNNNNNGTC	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	662
EcoT14I	CCWWGG	1 cut(s)	604
ErhI	CCWWGG	1 cut(s)	604
FaeI	CATG	4 cut(s)	71, 383, 449, 537
FatI	CATG	4 cut(s)	67, 379, 445, 533
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	2 cut(s)	144, 483
Fnu4HI	GCNGC	4 cut(s)	81, 253, 311, 702
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	4 cut(s)	81, 253, 311, 702
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	4 cut(s)	81, 253, 311, 702
HgaI	GACGC	1 cut(s)	551
Hin1I	GRCGYC	1 cut(s)	562
Hin1II	CATG	4 cut(s)	71, 383, 449, 537
HinfI	GANTC	5 cut(s)	134, 394, 426, 551, 671
HphI	GGTGA	1 cut(s)	495
Hpy166II	GTNNAC	2 cut(s)	145, 484
Hpy188I	TCNGA	3 cut(s)	242, 259, 372
Hpy188III	TCNNGA	4 cut(s)	220, 391, 469, 686
Hpy8I	GTNNAC	2 cut(s)	145, 484
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	2 cut(s)	119, 587
HpyCH4IV	ACGT	2 cut(s)	183, 272
HpyCH4V	TGCA	4 cut(s)	83, 282, 313, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	2 cut(s)	183, 272
Hsp92I	GRCGYC	1 cut(s)	562
Hsp92II	CATG	4 cut(s)	71, 383, 449, 537
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	3 cut(s)	333, 508, 519
Lsp1109I	GCAGC	2 cut(s)	67, 297
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	2 cut(s)	183, 272
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	3 cut(s)	239, 655, 671
MhlI	GDGCHC	1 cut(s)	640
MluCI	AATT	2 cut(s)	32, 366
MlyI	GAGTC	2 cut(s)	403, 665
MmeI	TCCRAC	2 cut(s)	137, 282
MnlI	CCTC	4 cut(s)	41, 70, 174, 693
MroXI	GAANNNNTTC	2 cut(s)	32, 555
MseI	TTAA	2 cut(s)	6, 63
MslI	CAYNNNNRTG	1 cut(s)	508
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	4 cut(s)	71, 383, 449, 537
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	593
NspI	RCATGY	2 cut(s)	71, 383
PciI	ACATGT	1 cut(s)	67
PdmI	GAANNNNTTC	2 cut(s)	32, 555
PfeI	GAWTC	3 cut(s)	134, 426, 551
PkrI	GCNGC	4 cut(s)	82, 254, 312, 703
PleI	GAGTC	2 cut(s)	402, 665
PpsI	GAGTC	2 cut(s)	402, 665
Ppu21I	YACGTR	1 cut(s)	273
PscI	ACATGT	1 cut(s)	67
PsiI	TTATAA	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	508
SaqAI	TTAA	2 cut(s)	6, 63
SatI	GCNGC	4 cut(s)	81, 253, 311, 702
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	403, 665
SduI	GDGCHC	1 cut(s)	640
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	508
Sse9I	AATT	2 cut(s)	32, 366
SsiI	CCGC	3 cut(s)	252, 398, 702
SspMI	CTAG	1 cut(s)	686
StyI	CCWWGG	1 cut(s)	604
TaaI	ACNGT	2 cut(s)	119, 587
TaiI	ACGT	2 cut(s)	186, 275
TaqI	TCGA	2 cut(s)	429, 634
TasI	AATT	2 cut(s)	32, 366
TauI	GCSGC	2 cut(s)	255, 704
TfiI	GAWTC	3 cut(s)	134, 426, 551
Tru1I	TTAA	2 cut(s)	6, 63
Tru9I	TTAA	2 cut(s)	6, 63
TscAI	CASTG	1 cut(s)	645
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	2 cut(s)	80, 310
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	7 cut(s)	25, 41, 86, 303, 434, 522, 662
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	1 cut(s)	645
VpaK11BI	GGWCC	1 cut(s)	115
XbaI	TCTAGA	1 cut(s)	685
XceI	RCATGY	2 cut(s)	71, 383
XmiI	GTMKAC	2 cut(s)	144, 483
XmnI	GAANNNNTTC	2 cut(s)	32, 555
XspI	CTAG	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.