Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006479

Physical Location & Seq

Genomic Coordinates Reverse (-)

70016090 .. 70017256

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035670

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCTATTGGTCAGGGCTCCCAGTGGATATCAGTTTCGCTGCTGCTAGAGAAGCAACATTTAATTAAAGTTGCAATTGTTAAAGCACAAGGGACTGTTTTGGGCACTAGAAGCAAAATGTATGGCCAAGCTGGTGGTATTTCTGCAGTAATTGGCGCTGTACTAATTTTGGGCAGAACAAACTTTGGGGCTCCAAGTGAATTTGCCATAGCAAGAATCACAGAAACCTTCATAGGGTTATCGTCATCGATTATTGTCGAGCTATTGTTGCAATCCACAAGAGCTTCCACTCTTGCAAAAGTTCAACTATCTAGGACTCTTGGGGCATTGCATGATTGTATTGACTCAGTGAGTCTTCAATCTAGAAGAGCACAATTGGAAGATAACCAGAAGTGTCTGAAAATTCATGTTGAAGAATTAGGGAGGCTCATTGCAGAAGCCGATGTGGAGCCTAATTTCTGGTTCTTTCCTTTTCACAGTGCTTGTTATGGAAAACTCATCAGTTCTATCTCCAAAATGATGGAACTCCTAGTTTTCAGTGGTCATGCAATTGGAGTTCTTGAACAGAATTCACAATTACTTGACGGTTCAAGGAAAGGCATCATGCATACAATGGAATGTGATCTTGAACTTTTCAAGATCAAGATGGTTGGCTCTTTGATAAGTTGCTTCAAGGAGATCACCCTGATCAAGTCGGTAACTGTTCTTGAGAAGGAAAGGCTTAATGATGATCAAGAAAGTGACAAATCTTGTGATCTGGACTTGGGAAAACAGCAAATTCTAAATGCTTTTAGGGTTTGTGGTTTAGAGGATGAAGAGATGGATAAGATTGTAAGTTCTTATCTCCTACACTCGAAGGAAGTTGTTGATAAAATTCATCGTCAGCAAAGTGAGGAGCTCAAGGCCCAAATTGTTTTATGTTTGAGTGCTTTAGGGTTCTGCATAAGTGGTTTGATAAGAGCAACAAGAGAGATAGAAGAGGGCATCAAAGAACTCGTTCAATGGGAGAATCCTTCGAGCCACGTTAATTTGTATGAAATCTCTTGTAAGATGCATGCTTTACAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FUSC_2

Protein Analysis

357

Amino Acids

39.42

Weight (kDa)

5.97

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28780
fragaria_vesca	FvH4_3g35590 FvH4_3g35590
malus_domestica	MD03G1096700.v1.1 MD11G1142900.v1.1
prunus_persica	Prupe.6G081000_v2.0.a1
pyrus_communis	pycom03g07990
rosa_chinensis	RchiOBHm_Chr5g0063771
rosa_laevigata	RLG00000035612 RLG00000035669 RLG00000035670
rosa_multiflora	Rmu_sc0005685.1_g000022 Rmu_sc0005685.1_g000032 Rmu_ssc0000309.1_g000027
rosa_roxburghii	Rroxscaffold_1G00017070
rosa_rugosa	Rorug05G0359500 Rorug05G0359800
rosa_samantha	Rh5AG418300 Rh5BG433400 Rh5BG433900 Rh5CG456600 Rh5CG457100 Rh5DG447000 Rh5DG447200
rosa_wichuraiana	Rw5G039280 Rw5G039290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	5 cut(s)	200, 402, 568, 777, 873
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	9 cut(s)	305, 359, 413, 563, 591, 629, 637, 673, 1001
AluBI	AGCT	4 cut(s)	131, 262, 284, 898
AluI	AGCT	4 cut(s)	131, 262, 284, 898
Alw21I	GWGCWC	2 cut(s)	373, 900
AoxI	GGCC	2 cut(s)	124, 903
ApeKI	GCWGC	2 cut(s)	40, 43
ApoI	RAATTY	5 cut(s)	200, 402, 568, 777, 873
Asp700I	GAANNNNTTC	1 cut(s)	996
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	904
AsuHPI	GGTGA	1 cut(s)	673
BaeGI	GKGCMC	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	126
BanII	GRGCYC	3 cut(s)	20, 193, 900
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	2 cut(s)	373, 900
BbvI	GCAGC	2 cut(s)	27, 30
BccI	CCATC	3 cut(s)	514, 640, 814
BclI	TGATCA	2 cut(s)	687, 730
BfaI	CTAG	5 cut(s)	47, 108, 312, 363, 530
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	2 cut(s)	41, 44
BlsI	GCNGC	2 cut(s)	42, 45
BmgT120I	GGNCC	1 cut(s)	904
BmiI	GGNNCC	3 cut(s)	19, 192, 450
BmrI	ACTGGG	1 cut(s)	16
BmsI	GCATC	3 cut(s)	609, 993, 1041
BmuI	ACTGGG	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	347
BpuEI	CTTGAG	2 cut(s)	728, 884
Bsa29I	ATCGAT	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	2 cut(s)	326, 429
BseCI	ATCGAT	1 cut(s)	248
BseGI	GGATG	1 cut(s)	817
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	2 cut(s)	326, 429
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	908
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	27, 30
BshFI	GGCC	2 cut(s)	126, 905
BshVI	ATCGAT	1 cut(s)	248
BsiHKAI	GWGCWC	2 cut(s)	373, 900
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	126, 905
Bsp1286I	GDGCHC	5 cut(s)	20, 107, 193, 373, 900
Bsp143I	GATC	6 cut(s)	622, 639, 678, 687, 730, 754
BspANI	GGCC	2 cut(s)	126, 905
BspCNI	CTCAG	1 cut(s)	359
BspDI	ATCGAT	1 cut(s)	248
BspLI	GGNNCC	3 cut(s)	19, 192, 450
BspMAI	CTGCAG	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	361
BsrDI	GCAATG	2 cut(s)	326, 429
BsrI	ACTGG	1 cut(s)	22
BssMI	GATC	6 cut(s)	622, 639, 678, 687, 730, 754
Bst4CI	ACNGT	4 cut(s)	97, 479, 587, 703
Bst6I	CTCTTC	3 cut(s)	361, 810, 972
BstC8I	GCNNGC	1 cut(s)	1056
BstDEI	CTNAG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	817
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	6 cut(s)	625, 642, 681, 690, 733, 757
BstMBI	GATC	6 cut(s)	622, 639, 678, 687, 730, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 111, 268
BstNSI	RCATGY	1 cut(s)	1058
BstSFI	CTRYAG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	27, 30
BstV2I	GAAGAC	1 cut(s)	347
BstXI	CCANNNNNNTGG	2 cut(s)	134, 520
Bsu15I	ATCGAT	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	126, 905
BsuTUI	ATCGAT	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	817
BtsIMutI	CAGTG	4 cut(s)	29, 354, 484, 544
Cac8I	GCNNGC	1 cut(s)	1056
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	904
ClaI	ATCGAT	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	5 cut(s)	332, 407, 545, 604, 1055
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	1 cut(s)	346
DpnI	GATC	6 cut(s)	624, 641, 680, 689, 732, 756
DpnII	GATC	6 cut(s)	622, 639, 678, 687, 730, 754
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	3 cut(s)	361, 810, 972
EarI	CTCTTC	3 cut(s)	361, 810, 972
Ecl136II	GAGCTC	1 cut(s)	898
Eco24I	GRGCYC	3 cut(s)	20, 193, 900
Eco32I	GATATC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	898
EcoICRI	GAGCTC	1 cut(s)	898
EcoRI	GAATTC	1 cut(s)	568
EcoRV	GATATC	1 cut(s)	30
EcoT22I	ATGCAT	2 cut(s)	609, 1056
EcoT38I	GRGCYC	3 cut(s)	20, 193, 900
FaeI	CATG	5 cut(s)	335, 410, 548, 607, 1058
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	5 cut(s)	331, 406, 544, 603, 1054
FbaI	TGATCA	2 cut(s)	687, 730
Fnu4HI	GCNGC	2 cut(s)	41, 44
FokI	GGATG	1 cut(s)	824
FriOI	GRGCYC	3 cut(s)	20, 193, 900
Fsp4HI	GCNGC	2 cut(s)	41, 44
FspBI	CTAG	5 cut(s)	47, 108, 312, 363, 530
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	2 cut(s)	41, 44
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	126, 905
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	5 cut(s)	335, 410, 548, 607, 1058
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	5 cut(s)	216, 316, 344, 352, 1009
HphI	GGTGA	1 cut(s)	673
Hpy188I	TCNGA	1 cut(s)	399
Hpy188III	TCNNGA	8 cut(s)	363, 560, 626, 637, 643, 707, 734, 758
HpyAV	CCTTC	4 cut(s)	238, 706, 850, 1023
HpyCH4III	ACNGT	4 cut(s)	97, 479, 587, 703
HpyCH4IV	ACGT	1 cut(s)	1023
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 111, 268
HpyF3I	CTNAG	1 cut(s)	346
HpySE526I	ACGT	1 cut(s)	1023
Hsp92II	CATG	5 cut(s)	335, 410, 548, 607, 1058
HspAI	GCGC	1 cut(s)	156
Ksp22I	TGATCA	2 cut(s)	687, 730
Kzo9I	GATC	6 cut(s)	622, 639, 678, 687, 730, 754
LguI	GCTCTTC	1 cut(s)	361
LmnI	GCTCC	4 cut(s)	23, 196, 448, 895
LpnPI	CCDG	6 cut(s)	35, 117, 401, 445, 698, 743
Lsp1109I	GCAGC	2 cut(s)	27, 30
LweI	GCATC	3 cut(s)	609, 993, 1041
MaeI	CTAG	5 cut(s)	47, 108, 312, 363, 530
MaeII	ACGT	1 cut(s)	1023
MaeIII	GTNAC	2 cut(s)	697, 740
MalI	GATC	6 cut(s)	624, 641, 680, 689, 732, 756
MboI	GATC	6 cut(s)	622, 639, 678, 687, 730, 754
MboII	GAAGA	6 cut(s)	347, 378, 392, 425, 827, 989
MfeI	CAATTG	3 cut(s)	75, 374, 549
MhlI	GDGCHC	5 cut(s)	20, 107, 193, 373, 900
MlsI	TGGCCA	1 cut(s)	126
MluNI	TGGCCA	1 cut(s)	126
MlyI	GAGTC	3 cut(s)	310, 338, 361
MnlI	CCTC	4 cut(s)	417, 802, 886, 973
Mox20I	TGGCCA	1 cut(s)	126
Mph1103I	ATGCAT	2 cut(s)	609, 1056
MroXI	GAANNNNTTC	1 cut(s)	996
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	5 cut(s)	62, 66, 81, 723, 1026
Msp20I	TGGCCA	1 cut(s)	126
MunI	CAATTG	3 cut(s)	75, 374, 549
MwoI	GCNNNNNNNGC	3 cut(s)	52, 111, 268
NdeII	GATC	6 cut(s)	622, 639, 678, 687, 730, 754
NlaIII	CATG	5 cut(s)	335, 410, 548, 607, 1058
NlaIV	GGNNCC	3 cut(s)	19, 192, 450
NmuCI	GTSAC	1 cut(s)	740
NsiI	ATGCAT	2 cut(s)	609, 1056
NspI	RCATGY	1 cut(s)	1058
PacI	TTAATTAA	1 cut(s)	66
PaeI	GCATGC	1 cut(s)	1058
PciSI	GCTCTTC	1 cut(s)	361
PdmI	GAANNNNTTC	1 cut(s)	996
PfeI	GAWTC	2 cut(s)	216, 1009
PkrI	GCNGC	2 cut(s)	42, 45
PleI	GAGTC	3 cut(s)	310, 338, 360
PpsI	GAGTC	3 cut(s)	310, 338, 360
Psp124BI	GAGCTC	1 cut(s)	900
PspN4I	GGNNCC	3 cut(s)	19, 192, 450
PspPI	GGNCC	1 cut(s)	904
PstI	CTGCAG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	900
SapI	GCTCTTC	1 cut(s)	361
SaqAI	TTAA	5 cut(s)	62, 66, 81, 723, 1026
SatI	GCNGC	2 cut(s)	41, 44
Sau3AI	GATC	6 cut(s)	622, 639, 678, 687, 730, 754
Sau96I	GGNCC	1 cut(s)	904
SchI	GAGTC	3 cut(s)	310, 338, 361
SduI	GDGCHC	5 cut(s)	20, 107, 193, 373, 900
SetI	ASST	6 cut(s)	133, 230, 264, 286, 900, 1026
SfaNI	GCATC	3 cut(s)	609, 993, 1041
SfcI	CTRYAG	1 cut(s)	144
SmlI	CTYRAG	2 cut(s)	707, 899
SmoI	CTYRAG	2 cut(s)	707, 899
SphI	GCATGC	1 cut(s)	1058
SspMI	CTAG	5 cut(s)	47, 108, 312, 363, 530
SstI	GAGCTC	1 cut(s)	900
TaaI	ACNGT	4 cut(s)	97, 479, 587, 703
TaiI	ACGT	1 cut(s)	1026
TaqI	TCGA	4 cut(s)	248, 258, 854, 1016
TatI	WGTACW	1 cut(s)	160
TfiI	GAWTC	2 cut(s)	216, 1009
Tru1I	TTAA	5 cut(s)	62, 66, 81, 723, 1026
Tru9I	TTAA	5 cut(s)	62, 66, 81, 723, 1026
TscAI	CASTG	4 cut(s)	29, 354, 484, 544
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	2 cut(s)	40, 43
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	5 cut(s)	220, 395, 828, 866, 1050
TspRI	CASTG	4 cut(s)	29, 354, 484, 544
XapI	RAATTY	5 cut(s)	200, 402, 568, 777, 873
XbaI	TCTAGA	1 cut(s)	362
XceI	RCATGY	1 cut(s)	1058
XmnI	GAANNNNTTC	1 cut(s)	996
XspI	CTAG	5 cut(s)	47, 108, 312, 363, 530
Zsp2I	ATGCAT	2 cut(s)	609, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.