Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005685.1

Orthogroup ID

OG0006479

Physical Location & Seq

Genomic Coordinates Forward (+)

141875 .. 145226

Gene Structure 3352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005685.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

atgcaatgggagagatttccactaaaaattttgggccaaggcaatgtcaatccaggagatagattgcaaggtttggagattcccctaaaagggatggaaatggcattgagtagtactccttcattcccagttggggtagtggatggagagctcaaaagtggtctacttaaactagtagaggagcaaatgagcttacatagaagcattccttgtgaagatgcaataactgctgaatcaaaaccagaaattgatattatgtggctccaaacacttcaaaccatcccacaaaaccaccaggatttatccccatttttcttcttgttttgtataagtctccttcatggaaatttattagccacatgttctggtactaccgcacaggacaagttggtaattcctcaaaaacaagaagcaattacttcatgtaagcaaagtgtgatatggagtaacttctccatgaaggtaagtagcaaaagggttatggcagctttcaagtgctcactttcattgggtctagctgtgttctttggcttactattcagcaaagaaaatggccattggtcggggctctcagttgctatcagtttagcggcagctagagaagcaacatttaaagttgcaaatgtcaaagcacaagggactgttttgggcagtgtatatggagttattggttgttttctgttccaaaggatcttactggttaggcttttatctctaattccttggttcattttcaccagttttcttcagagaagcaaactgtatggccaagctggtggtatttctgcagtaattggtgctgtactaattttgggcagaataaattttggacctccaagtgaattcgccatggcaagaatcacagaaaccttcattgggctatcatcaacgattattgttgagcttctgttgcaacccacaagagcttccgctcttgcgaaagttcaactcgctaggactcttggggcattgcatgagtgtattaactcagtgagtcttcaaactggaagagcacaattggaagataaccaaaagtgtctcaaaattcatgttgaagaattggggaagctcattgcagaagccgatgtggagcctaatttctggttcttgccttttcacagcgcttcttatggaaagctcttgagttctatctccaaaatgatggaactcctagtttttagtggtcatgcaattggagttcttgaacaaaattcacagggacttgatggttcttggaaaggcattgtgcatacaatggaatgtgatcttgaacttttcaagaagatggttggccctttgataagtttctttaaggagatcgccctgatcaagtcagtaacagttcttgagagggaagggcttgatgatcaagaaaatgccaaatcttgtgatcttgagctgggaaaaccgcaaaccctaaatgtttatagggcatgtggtttagaggatgaagagattgaaaagattggtgttcagggttttgggtcatcttcatctgaggctaatttgcagttacgggtctacttcaagctccaatctttttctaaagcgtgggagttgaaatttacgaagttttcatttcaaaagaaaagaaaaaaagtatttggattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FUSC_2

Protein Analysis

537

Amino Acids

59.25

Weight (kDa)

8.37

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28780
fragaria_vesca	FvH4_3g35590 FvH4_3g35590
malus_domestica	MD03G1096700.v1.1 MD11G1142900.v1.1
prunus_persica	Prupe.6G081000_v2.0.a1
pyrus_communis	pycom03g07990
rosa_chinensis	RchiOBHm_Chr5g0063771
rosa_laevigata	RLG00000035612 RLG00000035669 RLG00000035670
rosa_multiflora	Rmu_sc0005685.1_g000022 Rmu_sc0005685.1_g000032 Rmu_ssc0000309.1_g000027
rosa_roxburghii	Rroxscaffold_1G00017070
rosa_rugosa	Rorug05G0359500 Rorug05G0359800
rosa_samantha	Rh5AG418300 Rh5BG433400 Rh5BG433900 Rh5CG456600 Rh5CG457100 Rh5DG447000 Rh5DG447200
rosa_wichuraiana	Rw5G039280 Rw5G039290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	932
AccI	GTMKAC	2 cut(s)	163, 1521
AciI	CCGC	4 cut(s)	375, 590, 930, 1409
AclWI	GGATC	1 cut(s)	698
AcoI	YGGCCR	2 cut(s)	553, 766
AcsI	RAATTY	7 cut(s)	27, 346, 823, 842, 1044, 1210, 1562
AcuI	CTGAAG	1 cut(s)	731
AfaI	GTAC	3 cut(s)	115, 370, 804
AfeI	AGCGCT	1 cut(s)	1123
AfiI	CCNNNNNNNGG	5 cut(s)	89, 90, 133, 562, 876
AflIII	ACRYGT	1 cut(s)	359
AhlI	ACTAGT	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	52, 294
AjuI	GAANNNNNNNTTGG	2 cut(s)	858, 890
Alw21I	GWGCWC	3 cut(s)	153, 500, 1015
Alw26I	GTCTC	2 cut(s)	338, 1043
AlwI	GGATC	1 cut(s)	698
Aor51HI	AGCGCT	1 cut(s)	1123
AoxI	GGCC	4 cut(s)	34, 553, 766, 1291
ApeKI	GCWGC	2 cut(s)	485, 593
ApoI	RAATTY	7 cut(s)	27, 346, 823, 842, 1044, 1210, 1562
AspLEI	GCGC	1 cut(s)	1124
AspS9I	GGNCC	3 cut(s)	34, 830, 1292
AsuHPI	GGTGA	1 cut(s)	727
AvaII	GGWCC	1 cut(s)	830
BalI	TGGCCA	2 cut(s)	555, 768
BanII	GRGCYC	2 cut(s)	153, 570
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BbsI	GAAGAC	1 cut(s)	989
Bbv12I	GWGCWC	3 cut(s)	153, 500, 1015
BbvI	GCAGC	2 cut(s)	497, 605
BccI	CCATC	6 cut(s)	88, 137, 287, 1156, 1220, 1279
BciT130I	CCWGG	2 cut(s)	54, 296
BclI	TGATCA	2 cut(s)	1326, 1366
BcoDI	GTCTC	2 cut(s)	338, 1043
BcuI	ACTAGT	1 cut(s)	172
BfaI	CTAG	5 cut(s)	173, 515, 597, 954, 1172
BfmI	CTRYAG	1 cut(s)	786
BfoI	RGCGCY	1 cut(s)	1125
BisI	GCNGC	3 cut(s)	486, 591, 594
BlsI	GCNGC	3 cut(s)	487, 592, 595
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	2 cut(s)	54, 296
Bme18I	GGWCC	1 cut(s)	830
BmgT120I	GGNCC	3 cut(s)	34, 830, 1292
BmiI	GGNNCC	2 cut(s)	263, 1092
BmrFI	CCNGG	2 cut(s)	54, 296
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	208
BmuI	ACTGGG	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	989
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BpuEI	CTTGAG	3 cut(s)	1162, 1367, 1415
BsaJI	CCNNGG	3 cut(s)	37, 722, 849
Bsc4I	CCNNNNNNNGG	5 cut(s)	89, 90, 133, 562, 876
Bse1I	ACTGG	4 cut(s)	128, 702, 738, 1009
Bse3DI	GCAATG	4 cut(s)	11, 49, 968, 1071
BseBI	CCWGG	2 cut(s)	54, 296
BseDI	CCNNGG	3 cut(s)	37, 722, 849
BseGI	GGATG	4 cut(s)	99, 148, 279, 1453
BseLI	CCNNNNNNNGG	5 cut(s)	89, 90, 133, 562, 876
BseMI	GCAATG	4 cut(s)	11, 49, 968, 1071
BseMII	CTCAG	3 cut(s)	585, 1002, 1488
BseNI	ACTGG	4 cut(s)	128, 702, 738, 1009
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	2 cut(s)	497, 605
BseYI	CCCAGC	1 cut(s)	1399
BshFI	GGCC	4 cut(s)	36, 555, 768, 1293
BsiHKAI	GWGCWC	3 cut(s)	153, 500, 1015
BslFI	GGGAC	2 cut(s)	652, 1233
BslI	CCNNNNNNNGG	5 cut(s)	89, 90, 133, 562, 876
BsmAI	GTCTC	2 cut(s)	338, 1043
BsmFI	GGGAC	2 cut(s)	652, 1233
BsmI	GAATGC	1 cut(s)	204
BsnI	GGCC	4 cut(s)	36, 555, 768, 1293
Bsp1286I	GDGCHC	4 cut(s)	153, 500, 570, 1015
Bsp143I	GATC	6 cut(s)	690, 1264, 1317, 1326, 1366, 1390
Bsp19I	CCATGG	1 cut(s)	849
BspACI	CCGC	4 cut(s)	375, 590, 930, 1409
BspANI	GGCC	4 cut(s)	36, 555, 768, 1293
BspCNI	CTCAG	3 cut(s)	584, 1001, 1489
BspLI	GGNNCC	2 cut(s)	263, 1092
BspMAI	CTGCAG	1 cut(s)	790
BspPI	GGATC	1 cut(s)	698
BspQI	GCTCTTC	1 cut(s)	1003
BsrBI	CCGCTC	1 cut(s)	932
BsrDI	GCAATG	4 cut(s)	11, 49, 968, 1071
BsrI	ACTGG	4 cut(s)	128, 702, 738, 1009
BssECI	CCNNGG	3 cut(s)	37, 722, 849
BssMI	GATC	6 cut(s)	690, 1264, 1317, 1326, 1366, 1390
BssT1I	CCWWGG	3 cut(s)	37, 722, 849
Bst2UI	CCWGG	2 cut(s)	54, 296
Bst4CI	ACNGT	3 cut(s)	643, 762, 1342
Bst6I	CTCTTC	2 cut(s)	1003, 1446
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstDEI	CTNAG	3 cut(s)	571, 988, 1497
BstDSI	CCRYGG	1 cut(s)	849
BstF5I	GGATG	4 cut(s)	99, 148, 279, 1453
BstH2I	RGCGCY	1 cut(s)	1125
BstHHI	GCGC	1 cut(s)	1124
BstKTI	GATC	6 cut(s)	693, 1267, 1320, 1329, 1369, 1393
BstMAI	GTCTC	2 cut(s)	338, 1043
BstMBI	GATC	6 cut(s)	690, 1264, 1317, 1326, 1366, 1390
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 602, 910
BstNI	CCWGG	2 cut(s)	54, 296
BstNSI	RCATGY	2 cut(s)	363, 1437
BstSCI	CCNGG	2 cut(s)	52, 294
BstSFI	CTRYAG	1 cut(s)	786
BstV1I	GCAGC	2 cut(s)	497, 605
BstV2I	GAAGAC	1 cut(s)	989
BstX2I	RGATCY	1 cut(s)	690
BstXI	CCANNNNNNTGG	2 cut(s)	776, 1162
BstYI	RGATCY	1 cut(s)	690
BsuRI	GGCC	4 cut(s)	36, 555, 768, 1293
BtgI	CCRYGG	1 cut(s)	849
BtsCI	GGATG	4 cut(s)	99, 148, 279, 1453
BtsI	GCAGTG	1 cut(s)	658
BtsIMutI	CAGTG	2 cut(s)	658, 996
CfoI	GCGC	1 cut(s)	1124
Cfr13I	GGNCC	3 cut(s)	34, 830, 1292
Csp6I	GTAC	3 cut(s)	114, 369, 803
CviAII	CATG	9 cut(s)	341, 360, 423, 457, 850, 974, 1049, 1187, 1434
CviQI	GTAC	3 cut(s)	114, 369, 803
DdeI	CTNAG	3 cut(s)	571, 988, 1497
DpnI	GATC	6 cut(s)	692, 1266, 1319, 1328, 1368, 1392
DpnII	GATC	6 cut(s)	690, 1264, 1317, 1326, 1366, 1390
DraI	TTTAAA	1 cut(s)	613
EaeI	YGGCCR	2 cut(s)	553, 766
Eam1104I	CTCTTC	2 cut(s)	1003, 1446
EarI	CTCTTC	2 cut(s)	1003, 1446
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	3 cut(s)	37, 722, 849
Eco24I	GRGCYC	2 cut(s)	153, 570
Eco47I	GGWCC	1 cut(s)	830
Eco47III	AGCGCT	1 cut(s)	1123
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	731
EcoICRI	GAGCTC	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	842
EcoRII	CCWGG	2 cut(s)	52, 294
EcoT14I	CCWWGG	3 cut(s)	37, 722, 849
EcoT38I	GRGCYC	2 cut(s)	153, 570
ErhI	CCWWGG	3 cut(s)	37, 722, 849
FaeI	CATG	9 cut(s)	344, 363, 426, 460, 853, 977, 1052, 1190, 1437
FalI	AAGNNNNNCTT	2 cut(s)	193, 225
FaqI	GGGAC	2 cut(s)	652, 1233
FatI	CATG	9 cut(s)	340, 359, 422, 456, 849, 973, 1048, 1186, 1433
FbaI	TGATCA	2 cut(s)	1326, 1366
FblI	GTMKAC	2 cut(s)	163, 1521
Fnu4HI	GCNGC	3 cut(s)	486, 591, 594
FokI	GGATG	4 cut(s)	106, 155, 266, 1460
FriOI	GRGCYC	2 cut(s)	153, 570
Fsp4HI	GCNGC	3 cut(s)	486, 591, 594
FspBI	CTAG	5 cut(s)	173, 515, 597, 954, 1172
GlaI	GCGC	1 cut(s)	1123
GluI	GCNGC	3 cut(s)	486, 591, 594
GsaI	CCCAGC	1 cut(s)	1403
HaeII	RGCGCY	1 cut(s)	1125
HaeIII	GGCC	4 cut(s)	36, 555, 768, 1293
HhaI	GCGC	1 cut(s)	1124
Hin1II	CATG	9 cut(s)	344, 363, 426, 460, 853, 977, 1052, 1190, 1437
Hin6I	GCGC	1 cut(s)	1122
HinP1I	GCGC	1 cut(s)	1122
HinfI	GANTC	5 cut(s)	79, 233, 858, 958, 994
HphI	GGTGA	1 cut(s)	727
Hpy166II	GTNNAC	2 cut(s)	164, 1522
Hpy188I	TCNGA	2 cut(s)	750, 1498
Hpy188III	TCNNGA	7 cut(s)	1141, 1202, 1268, 1279, 1346, 1370, 1394
Hpy8I	GTNNAC	2 cut(s)	164, 1522
HpyAV	CCTTC	5 cut(s)	129, 347, 454, 880, 1349
HpyCH4III	ACNGT	3 cut(s)	643, 762, 1342
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 602, 910
HpyF3I	CTNAG	3 cut(s)	571, 988, 1497
Hsp92II	CATG	9 cut(s)	344, 363, 426, 460, 853, 977, 1052, 1190, 1437
HspAI	GCGC	1 cut(s)	1122
Ksp22I	TGATCA	2 cut(s)	1326, 1366
Kzo9I	GATC	6 cut(s)	690, 1264, 1317, 1326, 1366, 1390
LguI	GCTCTTC	1 cut(s)	1003
LmnI	GCTCC	4 cut(s)	181, 267, 1090, 1536
Lsp1109I	GCAGC	2 cut(s)	497, 605
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	5 cut(s)	173, 515, 597, 954, 1172
MaeIII	GTNAC	3 cut(s)	446, 1336, 1512
MalI	GATC	6 cut(s)	692, 1266, 1319, 1328, 1368, 1392
MbiI	CCGCTC	1 cut(s)	932
MboI	GATC	6 cut(s)	690, 1264, 1317, 1326, 1366, 1390
MfeI	CAATTG	2 cut(s)	1016, 1191
MflI	RGATCY	1 cut(s)	690
MhlI	GDGCHC	4 cut(s)	153, 500, 570, 1015
MlsI	TGGCCA	2 cut(s)	555, 768
MluNI	TGGCCA	2 cut(s)	555, 768
MlyI	GAGTC	2 cut(s)	952, 1003
MnlI	CCTC	6 cut(s)	172, 408, 843, 1344, 1438, 1492
Mox20I	TGGCCA	2 cut(s)	555, 768
MscI	TGGCCA	2 cut(s)	555, 768
MseI	TTAA	4 cut(s)	168, 612, 984, 1311
Msp20I	TGGCCA	2 cut(s)	555, 768
MspR9I	CCNGG	2 cut(s)	54, 296
MunI	CAATTG	2 cut(s)	1016, 1191
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	2 cut(s)	54, 296
MwoI	GCNNNNNNNGC	3 cut(s)	227, 602, 910
NcoI	CCATGG	1 cut(s)	849
NdeII	GATC	6 cut(s)	690, 1264, 1317, 1326, 1366, 1390
NlaIII	CATG	9 cut(s)	344, 363, 426, 460, 853, 977, 1052, 1190, 1437
NlaIV	GGNNCC	2 cut(s)	263, 1092
NspI	RCATGY	2 cut(s)	363, 1437
PciI	ACATGT	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	1003
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	3 cut(s)	79, 233, 858
PfoI	TCCNGGA	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	487, 592, 595
PleI	GAGTC	2 cut(s)	952, 1002
PpsI	GAGTC	2 cut(s)	952, 1002
PscI	ACATGT	1 cut(s)	359
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	2 cut(s)	52, 294
PspFI	CCCAGC	1 cut(s)	1399
PspGI	CCWGG	2 cut(s)	52, 294
PspN4I	GGNNCC	2 cut(s)	263, 1092
PspPI	GGNCC	3 cut(s)	34, 830, 1292
PstI	CTGCAG	1 cut(s)	790
PsuI	RGATCY	1 cut(s)	690
RsaI	GTAC	3 cut(s)	115, 370, 804
RsaNI	GTAC	3 cut(s)	114, 369, 803
SacI	GAGCTC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	1003
SaqAI	TTAA	4 cut(s)	168, 612, 984, 1311
SatI	GCNGC	3 cut(s)	486, 591, 594
Sau3AI	GATC	6 cut(s)	690, 1264, 1317, 1326, 1366, 1390
Sau96I	GGNCC	3 cut(s)	34, 830, 1292
ScaI	AGTACT	1 cut(s)	115
SchI	GAGTC	2 cut(s)	952, 1003
ScrFI	CCNGG	2 cut(s)	54, 296
SduI	GDGCHC	4 cut(s)	153, 500, 570, 1015
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	786
SinI	GGWCC	1 cut(s)	830
SmlI	CTYRAG	3 cut(s)	1141, 1346, 1394
SmoI	CTYRAG	3 cut(s)	1141, 1346, 1394
SpeI	ACTAGT	1 cut(s)	172
SsiI	CCGC	4 cut(s)	375, 590, 930, 1409
SspMI	CTAG	5 cut(s)	173, 515, 597, 954, 1172
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	52, 294
StyI	CCWWGG	3 cut(s)	37, 722, 849
TaaI	ACNGT	3 cut(s)	643, 762, 1342
TatI	WGTACW	2 cut(s)	113, 802
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	3 cut(s)	79, 233, 858
Tru1I	TTAA	4 cut(s)	168, 612, 984, 1311
Tru9I	TTAA	4 cut(s)	168, 612, 984, 1311
TscAI	CASTG	2 cut(s)	658, 996
TseI	GCWGC	2 cut(s)	485, 593
TspRI	CASTG	2 cut(s)	658, 996
VpaK11BI	GGWCC	1 cut(s)	830
XapI	RAATTY	7 cut(s)	27, 346, 823, 842, 1044, 1210, 1562
XceI	RCATGY	2 cut(s)	363, 1437
XmiI	GTMKAC	2 cut(s)	163, 1521
XspI	CTAG	5 cut(s)	173, 515, 597, 954, 1172
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.