Rh5DG447000

Fusaric acid resistance protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0006479
Physical Location & Seq
Reverse (-)
71295956 .. 71299121
3166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG447000.1

Sequence Viewer

Length: 1836 bp
ATGAAGCTCTTTGTGAAGGCTTTTTGTGCAAAAGATAACGCATCCGCGCTTGCTTCAATTTCTCAAACAAAGTCCTTGGCTTCCACTGCAACCAAGCTTATCCAAACCATCAAATGCCACCAAGAAAGCATGCAATGGGAGAGATTTCCACTAAAAATTTTGAGCCAAGGCAATGTCAATCCAGGAGATAGATTGCAAGGTTTGGAGATTCCCCTAAAAGGGATGGAAATGGCATTGAGTAGTACTCCTTCATTCCCAGTTGGGGTAGTGGATGGAGAGCTCAAAAGTGGTCTACTTAAACTAGTAGAGGAGCAAATGAGCTTACATAGAAGCATTCCTTGTGAAGATGCAATAACTGCTGAATCAAAACCAGAAATTGATATTATGTGGCTCCAAACACTTCAAACCATCCCACAAAACCACCAGGATTTATCCCCATTTTTCTTCTTGTTTTGTATAAGTCTCCTTCATGGAAATTTATTAGCCACATGTTCTGGTACTACCGCACAGGACAAGTTGGTAATTCCTCAAAAACAAGAAGCAATTACTTCATGTAAGCAAAGTGTGATATGGAGTAACTTCTCCATGAAGGTAAGTAGCAAAAGGGTTATGGCAGCTTTCAAGTGCTCACTTTCATTGGGTCTAGCTGTGTTCTTTGGCTTACTATTCAGCAAAGAAAATGGCCATTGGTCGGGGCTCTCAGTTGCTATCAGTTTAGCGGCAGCTAGAGAAGCAACATTTAAAGTTGCAAATGTCAAAGCACAAGGGACTGTTTTGGGCAGTGTATATGGAGTTATTGGTTGTTTTCTGTTCCAAAGGATCTTACTGGTTAGGCTTTTATCTCTAATTCCTTGGTTCATTTTCACCAGTTTTCTTCAGAGAAGCAAACTGTATGGCCAAGCTGGTGGTATTTCTGCAGTAATTGGTGCTGTACTAATTTTGGGCAGAATAAATTTTGGACCTCCAAGTGAATTCGCCATGGCAAGAATCACAGAAACCTTCATTGGGCTATCATCAACGATTATTGTTGAGCTTCTGTTGCAACCCACAAGAGCTTCCGCTCTTGCGAAAGTTCAACTCGCTAGGACTCTTGGGGCATTGCATGAGTGTATTAACTCAGTGAGTCTTCAAACTGGAAGAGCACAATTGGAAGATAACCAAAAGTGTCTCAAAATTCATGTTGAAGAATTGGGGAAGCTCATTGCAGAAGCCGATGTGGAGCCTAATTTCTGGTTCTTGCCTTTTCACAGCGCTTCTTATGGAAAGCTCTTGAGTTCTATCTCCAAAATGATGGAACTCCTAGTTTTTAGTGGTCATGCAATTGGAGTTCTTGAACAAAATTCACAGGGACTTGATGGTTCTTGGAAAGGCATTGTGCATACAATGGAATGTGATCTTGAACTTTTCAAGAAGATGGTTGGCCCTTTGATAAGTTTCTTTAAGGAGATCGCCCTGATCAAGTCAGTAACAGTTCTTGAGAGGGAAGGGCTTGATGATCAAGAAAATGCCAAATCTTGTGATCTTGAGCTGGGAAAACCGCAAACCCTAAATGTTTATAGGGCATGTGGTTTAGAGGATGAAGAGATTGAAAAGATTGTAAGTTCTTATCTCCTACACTCAAAGGAAATTGTTGATAAAATTCCTTGTCAGCAAAGTGAGGAGCTCAAGGGCCAAATTGTTTTATGTTTGAGTGCTTTAGGATTCTGCATAAGTGGTTTGATAGGAGCAACAAGAGAGATAGAAGAGGGAATCAAACAACTTGTTCGATGGGAGAATCCTTCAAGCCATGTTAGTTTGTATGAAATCTCTTGTAAGATGCATGCTTTACAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FUSC_2

Protein Analysis

611

Amino Acids

67.09

Weight (kDa)

6.89

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FUSC_2 PF13515 215 - 342 6.2e-13 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1061
AccI GTMKAC 1 cut(s) 292
AccII CGCG 1 cut(s) 47
AciI CCGC 5 cut(s) 45, 504, 719, 1059, 1538
AclWI GGATC 1 cut(s) 827
AcoI YGGCCR 2 cut(s) 682, 895
AcsI RAATTY 7 cut(s) 156, 475, 952, 971, 1173, 1339, 1638
AcuI CTGAAG 1 cut(s) 860
AfaI GTAC 3 cut(s) 244, 499, 933
AfeI AGCGCT 1 cut(s) 1252
AfiI CCNNNNNNNGG 5 cut(s) 218, 219, 262, 691, 1005
AflIII ACRYGT 1 cut(s) 488
AhlI ACTAGT 1 cut(s) 301
AjnI CCWGG 2 cut(s) 181, 423
AjuI GAANNNNNNNTTGG 2 cut(s) 987, 1019
Alw21I GWGCWC 4 cut(s) 282, 629, 1144, 1665
Alw26I GTCTC 2 cut(s) 467, 1172
AlwI GGATC 1 cut(s) 827
Aor51HI AGCGCT 1 cut(s) 1252
AoxI GGCC 4 cut(s) 682, 895, 1420, 1669
ApeKI GCWGC 2 cut(s) 614, 722
ApoI RAATTY 7 cut(s) 156, 475, 952, 971, 1173, 1339, 1638
AspLEI GCGC 2 cut(s) 49, 1253
AspS9I GGNCC 3 cut(s) 959, 1421, 1669
AsuHPI GGTGA 1 cut(s) 856
AvaII GGWCC 1 cut(s) 959
BalI TGGCCA 2 cut(s) 684, 897
BanII GRGCYC 3 cut(s) 282, 699, 1665
BarI GAAGNNNNNNTAC 2 cut(s) 232, 264
BbsI GAAGAC 1 cut(s) 1118
Bbv12I GWGCWC 4 cut(s) 282, 629, 1144, 1665
BbvI GCAGC 2 cut(s) 626, 734
BccI CCATC 8 cut(s) 116, 217, 266, 416, 1285, 1349, 1408, 1761
BciT130I CCWGG 2 cut(s) 183, 425
BclI TGATCA 2 cut(s) 1455, 1495
BcoDI GTCTC 2 cut(s) 467, 1172
BcuI ACTAGT 1 cut(s) 301
BfaI CTAG 5 cut(s) 302, 644, 726, 1083, 1301
BfmI CTRYAG 1 cut(s) 915
BfoI RGCGCY 1 cut(s) 1254
BisI GCNGC 3 cut(s) 615, 720, 723
BlsI GCNGC 3 cut(s) 616, 721, 724
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 183, 425
Bme18I GGWCC 1 cut(s) 959
BmgT120I GGNCC 3 cut(s) 959, 1421, 1669
BmiI GGNNCC 2 cut(s) 392, 1221
BmrFI CCNGG 2 cut(s) 183, 425
BmrI ACTGGG 1 cut(s) 251
BmsI GCATC 3 cut(s) 50, 337, 1806
BmuI ACTGGG 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 1118
BplI GAGNNNNNCTC 2 cut(s) 229, 261
BpuEI CTTGAG 4 cut(s) 1291, 1496, 1544, 1649
BsaJI CCNNGG 4 cut(s) 75, 166, 851, 978
Bsc4I CCNNNNNNNGG 5 cut(s) 218, 219, 262, 691, 1005
Bse1I ACTGG 4 cut(s) 257, 831, 867, 1138
Bse3DI GCAATG 4 cut(s) 140, 178, 1097, 1200
BseBI CCWGG 2 cut(s) 183, 425
BseDI CCNNGG 4 cut(s) 75, 166, 851, 978
BseGI GGATG 5 cut(s) 41, 228, 277, 408, 1582
BseLI CCNNNNNNNGG 5 cut(s) 218, 219, 262, 691, 1005
BseMI GCAATG 4 cut(s) 140, 178, 1097, 1200
BseMII CTCAG 2 cut(s) 714, 1131
BseNI ACTGG 4 cut(s) 257, 831, 867, 1138
BseRI GAGGAG 2 cut(s) 323, 1673
BseXI GCAGC 2 cut(s) 626, 734
BseYI CCCAGC 1 cut(s) 1528
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 4 cut(s) 684, 897, 1422, 1671
BsiHKAI GWGCWC 4 cut(s) 282, 629, 1144, 1665
BslFI GGGAC 2 cut(s) 781, 1362
BslI CCNNNNNNNGG 5 cut(s) 218, 219, 262, 691, 1005
BsmAI GTCTC 2 cut(s) 467, 1172
BsmFI GGGAC 2 cut(s) 781, 1362
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 4 cut(s) 684, 897, 1422, 1671
Bsp1286I GDGCHC 5 cut(s) 282, 629, 699, 1144, 1665
Bsp143I GATC 6 cut(s) 819, 1393, 1446, 1455, 1495, 1519
Bsp19I CCATGG 1 cut(s) 978
BspACI CCGC 5 cut(s) 45, 504, 719, 1059, 1538
BspANI GGCC 4 cut(s) 684, 897, 1422, 1671
BspCNI CTCAG 2 cut(s) 713, 1130
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 2 cut(s) 392, 1221
BspMAI CTGCAG 1 cut(s) 919
BspPI GGATC 1 cut(s) 827
BspQI GCTCTTC 1 cut(s) 1132
BsrBI CCGCTC 1 cut(s) 1061
BsrDI GCAATG 4 cut(s) 140, 178, 1097, 1200
BsrI ACTGG 4 cut(s) 257, 831, 867, 1138
BssECI CCNNGG 4 cut(s) 75, 166, 851, 978
BssMI GATC 6 cut(s) 819, 1393, 1446, 1455, 1495, 1519
BssT1I CCWWGG 4 cut(s) 75, 166, 851, 978
Bst2UI CCWGG 2 cut(s) 183, 425
Bst4CI ACNGT 3 cut(s) 772, 891, 1471
Bst6I CTCTTC 3 cut(s) 1132, 1575, 1737
BstAPI GCANNNNNTGC 1 cut(s) 356
BstC8I GCNNGC 3 cut(s) 51, 131, 1821
BstDEI CTNAG 2 cut(s) 700, 1117
BstDSI CCRYGG 1 cut(s) 978
BstF5I GGATG 5 cut(s) 41, 228, 277, 408, 1582
BstFNI CGCG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 1254
BstHHI GCGC 2 cut(s) 49, 1253
BstKTI GATC 6 cut(s) 822, 1396, 1449, 1458, 1498, 1522
BstMAI GTCTC 2 cut(s) 467, 1172
BstMBI GATC 6 cut(s) 819, 1393, 1446, 1455, 1495, 1519
BstMWI GCNNNNNNNGC 5 cut(s) 26, 86, 356, 731, 1039
BstNI CCWGG 2 cut(s) 183, 425
BstNSI RCATGY 4 cut(s) 133, 492, 1566, 1823
BstSCI CCNGG 2 cut(s) 181, 423
BstSFI CTRYAG 1 cut(s) 915
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 2 cut(s) 626, 734
BstV2I GAAGAC 1 cut(s) 1118
BstX2I RGATCY 1 cut(s) 819
BstXI CCANNNNNNTGG 2 cut(s) 905, 1291
BstYI RGATCY 1 cut(s) 819
BsuRI GGCC 4 cut(s) 684, 897, 1422, 1671
BtgI CCRYGG 1 cut(s) 978
BtsCI GGATG 5 cut(s) 41, 228, 277, 408, 1582
BtsI GCAGTG 2 cut(s) 84, 787
BtsIMutI CAGTG 3 cut(s) 84, 787, 1125
Cac8I GCNNGC 3 cut(s) 51, 131, 1821
CfoI GCGC 2 cut(s) 49, 1253
Cfr13I GGNCC 3 cut(s) 959, 1421, 1669
Csp6I GTAC 3 cut(s) 243, 498, 932
CviQI GTAC 3 cut(s) 243, 498, 932
DdeI CTNAG 2 cut(s) 700, 1117
DpnI GATC 6 cut(s) 821, 1395, 1448, 1457, 1497, 1521
DpnII GATC 6 cut(s) 819, 1393, 1446, 1455, 1495, 1519
DraI TTTAAA 1 cut(s) 742
EaeI YGGCCR 2 cut(s) 682, 895
Eam1104I CTCTTC 3 cut(s) 1132, 1575, 1737
EarI CTCTTC 3 cut(s) 1132, 1575, 1737
Ecl136II GAGCTC 2 cut(s) 280, 1663
Eco130I CCWWGG 4 cut(s) 75, 166, 851, 978
Eco24I GRGCYC 3 cut(s) 282, 699, 1665
Eco47I GGWCC 1 cut(s) 959
Eco47III AGCGCT 1 cut(s) 1252
Eco53kI GAGCTC 2 cut(s) 280, 1663
Eco57I CTGAAG 1 cut(s) 860
EcoICRI GAGCTC 2 cut(s) 280, 1663
EcoRI GAATTC 1 cut(s) 971
EcoRII CCWGG 2 cut(s) 181, 423
EcoT14I CCWWGG 4 cut(s) 75, 166, 851, 978
EcoT22I ATGCAT 1 cut(s) 1821
EcoT38I GRGCYC 3 cut(s) 282, 699, 1665
ErhI CCWWGG 4 cut(s) 75, 166, 851, 978
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FaqI GGGAC 2 cut(s) 781, 1362
FbaI TGATCA 2 cut(s) 1455, 1495
FblI GTMKAC 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 615, 720, 723
FokI GGATG 5 cut(s) 28, 235, 284, 395, 1589
FriOI GRGCYC 3 cut(s) 282, 699, 1665
Fsp4HI GCNGC 3 cut(s) 615, 720, 723
FspBI CTAG 5 cut(s) 302, 644, 726, 1083, 1301
GlaI GCGC 2 cut(s) 48, 1252
GluI GCNGC 3 cut(s) 615, 720, 723
GsaI CCCAGC 1 cut(s) 1532
HaeII RGCGCY 1 cut(s) 1254
HaeIII GGCC 4 cut(s) 684, 897, 1422, 1671
HhaI GCGC 2 cut(s) 49, 1253
Hin6I GCGC 2 cut(s) 47, 1251
HinP1I GCGC 2 cut(s) 47, 1251
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 8 cut(s) 208, 362, 987, 1087, 1123, 1701, 1749, 1774
HphI GGTGA 1 cut(s) 856
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 1 cut(s) 879
Hpy188III TCNNGA 7 cut(s) 1270, 1331, 1397, 1408, 1475, 1499, 1523
Hpy8I GTNNAC 1 cut(s) 293
HpyAV CCTTC 7 cut(s) 10, 258, 476, 583, 1009, 1478, 1788
HpyCH4III ACNGT 3 cut(s) 772, 891, 1471
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 86, 356, 731, 1039
HpyF3I CTNAG 2 cut(s) 700, 1117
HspAI GCGC 2 cut(s) 47, 1251
Ksp22I TGATCA 2 cut(s) 1455, 1495
Kzo9I GATC 6 cut(s) 819, 1393, 1446, 1455, 1495, 1519
LguI GCTCTTC 1 cut(s) 1132
LmnI GCTCC 5 cut(s) 310, 396, 1219, 1660, 1724
Lsp1109I GCAGC 2 cut(s) 626, 734
LweI GCATC 3 cut(s) 50, 337, 1806
MaeI CTAG 5 cut(s) 302, 644, 726, 1083, 1301
MaeIII GTNAC 2 cut(s) 575, 1465
MalI GATC 6 cut(s) 821, 1395, 1448, 1457, 1497, 1521
MbiI CCGCTC 1 cut(s) 1061
MboI GATC 6 cut(s) 819, 1393, 1446, 1455, 1495, 1519
MfeI CAATTG 2 cut(s) 1145, 1320
MflI RGATCY 1 cut(s) 819
MhlI GDGCHC 5 cut(s) 282, 629, 699, 1144, 1665
MlsI TGGCCA 2 cut(s) 684, 897
MluNI TGGCCA 2 cut(s) 684, 897
MlyI GAGTC 2 cut(s) 1081, 1132
MnlI CCTC 7 cut(s) 301, 537, 972, 1473, 1567, 1651, 1738
Mox20I TGGCCA 2 cut(s) 684, 897
Mph1103I ATGCAT 1 cut(s) 1821
MscI TGGCCA 2 cut(s) 684, 897
MseI TTAA 4 cut(s) 297, 741, 1113, 1440
Msp20I TGGCCA 2 cut(s) 684, 897
MspR9I CCNGG 2 cut(s) 183, 425
MunI CAATTG 2 cut(s) 1145, 1320
Mva1269I GAATGC 1 cut(s) 333
MvaI CCWGG 2 cut(s) 183, 425
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 5 cut(s) 26, 86, 356, 731, 1039
NcoI CCATGG 1 cut(s) 978
NdeII GATC 6 cut(s) 819, 1393, 1446, 1455, 1495, 1519
NlaIV GGNNCC 2 cut(s) 392, 1221
NsiI ATGCAT 1 cut(s) 1821
NspI RCATGY 4 cut(s) 133, 492, 1566, 1823
PaeI GCATGC 2 cut(s) 133, 1823
PciI ACATGT 1 cut(s) 488
PciSI GCTCTTC 1 cut(s) 1132
PctI GAATGC 1 cut(s) 333
PfeI GAWTC 6 cut(s) 208, 362, 987, 1701, 1749, 1774
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 3 cut(s) 616, 721, 724
PleI GAGTC 2 cut(s) 1081, 1131
PpsI GAGTC 2 cut(s) 1081, 1131
PscI ACATGT 1 cut(s) 488
Psp124BI GAGCTC 2 cut(s) 282, 1665
Psp6I CCWGG 2 cut(s) 181, 423
PspFI CCCAGC 1 cut(s) 1528
PspGI CCWGG 2 cut(s) 181, 423
PspN4I GGNNCC 2 cut(s) 392, 1221
PspPI GGNCC 3 cut(s) 959, 1421, 1669
PstI CTGCAG 1 cut(s) 919
PsuI RGATCY 1 cut(s) 819
RsaI GTAC 3 cut(s) 244, 499, 933
RsaNI GTAC 3 cut(s) 243, 498, 932
SacI GAGCTC 2 cut(s) 282, 1665
SapI GCTCTTC 1 cut(s) 1132
SaqAI TTAA 4 cut(s) 297, 741, 1113, 1440
SatI GCNGC 3 cut(s) 615, 720, 723
Sau3AI GATC 6 cut(s) 819, 1393, 1446, 1455, 1495, 1519
Sau96I GGNCC 3 cut(s) 959, 1421, 1669
ScaI AGTACT 1 cut(s) 244
SchI GAGTC 2 cut(s) 1081, 1132
ScrFI CCNGG 2 cut(s) 183, 425
SduI GDGCHC 5 cut(s) 282, 629, 699, 1144, 1665
SfaNI GCATC 3 cut(s) 50, 337, 1806
SfcI CTRYAG 1 cut(s) 915
SinI GGWCC 1 cut(s) 959
SmlI CTYRAG 4 cut(s) 1270, 1475, 1523, 1664
SmoI CTYRAG 4 cut(s) 1270, 1475, 1523, 1664
SpeI ACTAGT 1 cut(s) 301
SphI GCATGC 2 cut(s) 133, 1823
SsiI CCGC 5 cut(s) 45, 504, 719, 1059, 1538
SspMI CTAG 5 cut(s) 302, 644, 726, 1083, 1301
SstI GAGCTC 2 cut(s) 282, 1665
StyD4I CCNGG 2 cut(s) 181, 423
StyI CCWWGG 4 cut(s) 75, 166, 851, 978
TaaI ACNGT 3 cut(s) 772, 891, 1471
TaqI TCGA 1 cut(s) 1765
TatI WGTACW 2 cut(s) 242, 931
TauI GCSGC 1 cut(s) 722
TfiI GAWTC 6 cut(s) 208, 362, 987, 1701, 1749, 1774
Tru1I TTAA 4 cut(s) 297, 741, 1113, 1440
Tru9I TTAA 4 cut(s) 297, 741, 1113, 1440
TscAI CASTG 3 cut(s) 91, 787, 1125
TseI GCWGC 2 cut(s) 614, 722
TspRI CASTG 3 cut(s) 91, 787, 1125
VpaK11BI GGWCC 1 cut(s) 959
XapI RAATTY 7 cut(s) 156, 475, 952, 971, 1173, 1339, 1638
XceI RCATGY 4 cut(s) 133, 492, 1566, 1823
XmiI GTMKAC 1 cut(s) 292
XspI CTAG 5 cut(s) 302, 644, 726, 1083, 1301
ZrmI AGTACT 1 cut(s) 244
Zsp2I ATGCAT 1 cut(s) 1821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.