Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006479

Physical Location & Seq

Genomic Coordinates Reverse (-)

63447441 .. 63449186

Gene Structure 1746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG456600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1707 bp

ATGCAATGGGAGAGATTTCCACTAAAAATTTTGGGCCAAGGCAATGTCAATCCAGGAGATAGATTGCAAGGTTTGGAGATTCCCCTAAAAGGGATGGAAATGGCATTGAGTAGTACTCCTTCATTCCCAGTTGGGGTAGTGGATGGAGAGCTCAAAAGTGGTCTACTTAAACTAGTAGAGGATCAAATGAGCTTAAATAGAAGCATTCCTTGTGAAGATGCAATAACTGCTGAATCAAAACCAGAAATTGATATTAGGTGCCTCCAGACACTTCAAACCATCCCACAAAACCACCAGGATTTATCCCCATTTTTCTTCTTGTTTTGTATAAGTCTCCTTCATGGAAATTTATTAGCCACATGTTCTGGTACTACCGCACAGGACAAGTTGGTAATTCCTCAAAAACAAGAAGCAATTACTTCATGTAAGCAAAGTGTGATATGGAGTAACTTCTCCATGAAGGTAAGTAGCAAAAGGGTTATGGCAGCTTTCAAGTGCTCACTTTCATTGGGTCTAGCTGTGTTCTTTGGCTTACTATTCAGCAAAGAAAATGGCCATTGGTCGGGGCTCTCAGTTGCTATCAGTTTAGCGGCAGCTAGAGAAGCAACATTTAAAGTTGCAAATGTTAAAGCACAAGGGACTGTTTTGGGCAGTGTATATGGAGTTATTGGTTGTTTTCTGTTCCAAAGGATCTTACCGGTTAGACTCTTATCTCTAATTCCTTGGTTCATTTTCACCAGTTTTCTTCAGAGAAGCAAAATGTATGGCCATGCTGGTGGTATTTCTGCAGTAATTGGTGCTGTACTAATTTTGGGCAGAATAAATTTTGGACCTCCAAGTGAATTCGCCATGACAAGAATCACAGAAACCTTCATTGGGCTATCATCAACGATTATTGTTGAGCTTCTGTTGCAACCCACAAGAGCTTCCGCTCTTGCAAAAGTTCAACTCTCTAGGACTCTTGGGGCATTGCATGAGTGTATTAACTCAGTGAGTCTTCAAACTGGAAGAGCACAATTGGAAGATAACCAAAAGTGTCTCAAAATTCATGTTGAAGAATTGGGGAAGCTCATTGCAGAAGCCGATGTGGAGCCAAATTTCTGGTTCTTGCCTTTTCACAGCACTTCTTATGGAAAGCTCATGAGTTCTATCTCCAAAATGATGGAACTCGTAGTTTTTAGTGGTCATGCAATTGGAGTTCTTGAACAAAATTCACAGGGACTTGAGGGTTCTTGGAAAGGCATTGTGCATACAATGGAATGTGATCTTGAACTTTTCGAGAAGATGGTTGGCCCTTTGATAAGTTTCTTTAAGGAGATCGCCCTGATCAAGTCAGTAACAGTTCTTGAGAAGGAAGGGCTTGATGATCAAGAAAATGCCAAATCTTGTGATCTTGAGCTGGGAAAACCGCAAACCCTAAATGTTTATAGGGCTTGTGGTTTAGAGGATGAAGAGATTGATAAGATTGTAAGTTCTTATCTCCTACACTCAAAGGAAATTGTTGATAAAATTCCTTGTCAGCAAAGTGAGGAGCTCAAGGGCCAAATGGTTTTATGTTTGAGTGCTTTAGGATTCTGCATAAGTGGTTTGATAGGAGCAACAAGAGAGATAGAAGAGGGAATCAAACAACTTGTTCGATGGGAGAATCCTTCAAGCCATGTTAATTTGTATGAAATATCTTGTAAGATGCATGCTTTACAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FUSC_2

Protein Analysis

568

Amino Acids

62.48

Weight (kDa)

6.11

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FUSC	PF04632	163 - 344	3.6e-06	Fusaric acid resistance protein family
FUSC_2	PF13515	172 - 299	7.3e-14	Fusaric acid resistance protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28780
fragaria_vesca	FvH4_3g35590 FvH4_3g35590
malus_domestica	MD03G1096700.v1.1 MD11G1142900.v1.1
prunus_persica	Prupe.6G081000_v2.0.a1
pyrus_communis	pycom03g07990
rosa_chinensis	RchiOBHm_Chr5g0063771
rosa_laevigata	RLG00000035612 RLG00000035669 RLG00000035670
rosa_multiflora	Rmu_sc0005685.1_g000022 Rmu_sc0005685.1_g000032 Rmu_ssc0000309.1_g000027
rosa_roxburghii	Rroxscaffold_1G00017070
rosa_rugosa	Rorug05G0359500 Rorug05G0359800
rosa_samantha	Rh5AG418300 Rh5BG433400 Rh5BG433900 Rh5CG456600 Rh5CG457100 Rh5DG447000 Rh5DG447200
rosa_wichuraiana	Rw5G039280 Rw5G039290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	258
AccBSI	CCGCTC	1 cut(s)	932
AccI	GTMKAC	1 cut(s)	163
AciI	CCGC	4 cut(s)	375, 590, 930, 1409
AclWI	GGATC	2 cut(s)	189, 698
AcoI	YGGCCR	2 cut(s)	553, 766
AcsI	RAATTY	8 cut(s)	27, 346, 823, 842, 1044, 1096, 1210, 1509
AcuI	CTGAAG	1 cut(s)	731
AfaI	GTAC	3 cut(s)	115, 370, 804
AfiI	CCNNNNNNNGG	5 cut(s)	89, 90, 133, 562, 876
AflIII	ACRYGT	1 cut(s)	359
AgeI	ACCGGT	1 cut(s)	697
AgsI	TTSAA	8 cut(s)	275, 493, 947, 1001, 1055, 1205, 1271, 1653
AhlI	ACTAGT	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	52, 294
AjuI	GAANNNNNNNTTGG	2 cut(s)	858, 890
Alw21I	GWGCWC	4 cut(s)	153, 500, 1015, 1536
Alw26I	GTCTC	2 cut(s)	338, 1043
AlwI	GGATC	2 cut(s)	189, 698
AoxI	GGCC	5 cut(s)	34, 553, 766, 1291, 1540
ApeKI	GCWGC	2 cut(s)	485, 593
ApoI	RAATTY	8 cut(s)	27, 346, 823, 842, 1044, 1096, 1210, 1509
AsiGI	ACCGGT	1 cut(s)	697
AspS9I	GGNCC	4 cut(s)	34, 830, 1292, 1540
AsuHPI	GGTGA	1 cut(s)	727
AvaII	GGWCC	1 cut(s)	830
BalI	TGGCCA	2 cut(s)	555, 768
BanI	GGYRCC	1 cut(s)	258
BanII	GRGCYC	3 cut(s)	153, 570, 1536
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BbsI	GAAGAC	1 cut(s)	989
Bbv12I	GWGCWC	4 cut(s)	153, 500, 1015, 1536
BbvI	GCAGC	2 cut(s)	497, 605
BccI	CCATC	6 cut(s)	88, 137, 287, 1156, 1279, 1632
BciT130I	CCWGG	2 cut(s)	54, 296
BclI	TGATCA	2 cut(s)	1326, 1366
BcoDI	GTCTC	2 cut(s)	338, 1043
BcuI	ACTAGT	1 cut(s)	172
BfaI	CTAG	4 cut(s)	173, 515, 597, 954
BfmI	CTRYAG	1 cut(s)	786
BisI	GCNGC	3 cut(s)	486, 591, 594
BlsI	GCNGC	3 cut(s)	487, 592, 595
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	2 cut(s)	54, 296
Bme18I	GGWCC	1 cut(s)	830
BmgT120I	GGNCC	4 cut(s)	34, 830, 1292, 1540
BmiI	GGNNCC	2 cut(s)	260, 1092
BmrFI	CCNGG	2 cut(s)	54, 296
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	2 cut(s)	208, 1677
BmuI	ACTGGG	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	989
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BpmI	CTGGAG	1 cut(s)	248
BpuEI	CTTGAG	4 cut(s)	1244, 1367, 1415, 1520
BsaJI	CCNNGG	2 cut(s)	37, 722
BsaWI	WCCGGW	1 cut(s)	697
Bsc4I	CCNNNNNNNGG	5 cut(s)	89, 90, 133, 562, 876
Bse118I	RCCGGY	1 cut(s)	697
Bse1I	ACTGG	3 cut(s)	128, 738, 1009
Bse3DI	GCAATG	4 cut(s)	11, 49, 968, 1071
BseBI	CCWGG	2 cut(s)	54, 296
BseDI	CCNNGG	2 cut(s)	37, 722
BseGI	GGATG	4 cut(s)	99, 148, 279, 1453
BseLI	CCNNNNNNNGG	5 cut(s)	89, 90, 133, 562, 876
BseMI	GCAATG	4 cut(s)	11, 49, 968, 1071
BseMII	CTCAG	2 cut(s)	585, 1002
BseNI	ACTGG	3 cut(s)	128, 738, 1009
BseRI	GAGGAG	1 cut(s)	1544
BseXI	GCAGC	2 cut(s)	497, 605
BseYI	CCCAGC	1 cut(s)	1399
BshFI	GGCC	5 cut(s)	36, 555, 768, 1293, 1542
BshNI	GGYRCC	1 cut(s)	258
BshTI	ACCGGT	1 cut(s)	697
BsiHKAI	GWGCWC	4 cut(s)	153, 500, 1015, 1536
BsiSI	CCGG	1 cut(s)	698
BslFI	GGGAC	2 cut(s)	652, 1233
BslI	CCNNNNNNNGG	5 cut(s)	89, 90, 133, 562, 876
BsmAI	GTCTC	2 cut(s)	338, 1043
BsmFI	GGGAC	2 cut(s)	652, 1233
BsmI	GAATGC	1 cut(s)	204
BsnI	GGCC	5 cut(s)	36, 555, 768, 1293, 1542
Bsp1286I	GDGCHC	5 cut(s)	153, 500, 570, 1015, 1536
Bsp143I	GATC	7 cut(s)	181, 690, 1264, 1317, 1326, 1366, 1390
BspACI	CCGC	4 cut(s)	375, 590, 930, 1409
BspANI	GGCC	5 cut(s)	36, 555, 768, 1293, 1542
BspCNI	CTCAG	2 cut(s)	584, 1001
BspHI	TCATGA	1 cut(s)	1140
BspLI	GGNNCC	2 cut(s)	260, 1092
BspMAI	CTGCAG	1 cut(s)	790
BspPI	GGATC	2 cut(s)	189, 698
BspQI	GCTCTTC	1 cut(s)	1003
BspT107I	GGYRCC	1 cut(s)	258
BsrBI	CCGCTC	1 cut(s)	932
BsrDI	GCAATG	4 cut(s)	11, 49, 968, 1071
BsrFI	RCCGGY	1 cut(s)	697
BsrI	ACTGG	3 cut(s)	128, 738, 1009
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	2 cut(s)	37, 722
BssMI	GATC	7 cut(s)	181, 690, 1264, 1317, 1326, 1366, 1390
BssT1I	CCWWGG	2 cut(s)	37, 722
Bst2UI	CCWGG	2 cut(s)	54, 296
Bst4CI	ACNGT	2 cut(s)	643, 1342
Bst6I	CTCTTC	3 cut(s)	1003, 1446, 1608
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	1692
BstDEI	CTNAG	2 cut(s)	571, 988
BstF5I	GGATG	4 cut(s)	99, 148, 279, 1453
BstKTI	GATC	7 cut(s)	184, 693, 1267, 1320, 1329, 1369, 1393
BstMAI	GTCTC	2 cut(s)	338, 1043
BstMBI	GATC	7 cut(s)	181, 690, 1264, 1317, 1326, 1366, 1390
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 602, 910
BstNI	CCWGG	2 cut(s)	54, 296
BstNSI	RCATGY	2 cut(s)	363, 1694
BstSCI	CCNGG	2 cut(s)	52, 294
BstSFI	CTRYAG	1 cut(s)	786
BstV1I	GCAGC	2 cut(s)	497, 605
BstV2I	GAAGAC	1 cut(s)	989
BstX2I	RGATCY	1 cut(s)	690
BstXI	CCANNNNNNTGG	3 cut(s)	776, 1101, 1162
BstYI	RGATCY	1 cut(s)	690
BsuRI	GGCC	5 cut(s)	36, 555, 768, 1293, 1542
BtsCI	GGATG	4 cut(s)	99, 148, 279, 1453
BtsI	GCAGTG	1 cut(s)	658
BtsIMutI	CAGTG	2 cut(s)	658, 996
Cac8I	GCNNGC	1 cut(s)	1692
CciI	TCATGA	1 cut(s)	1140
Cfr10I	RCCGGY	1 cut(s)	697
Cfr13I	GGNCC	4 cut(s)	34, 830, 1292, 1540
Csp6I	GTAC	3 cut(s)	114, 369, 803
CspAI	ACCGGT	1 cut(s)	697
CviQI	GTAC	3 cut(s)	114, 369, 803
DdeI	CTNAG	2 cut(s)	571, 988
DpnI	GATC	7 cut(s)	183, 692, 1266, 1319, 1328, 1368, 1392
DpnII	GATC	7 cut(s)	181, 690, 1264, 1317, 1326, 1366, 1390
DraI	TTTAAA	1 cut(s)	613
EaeI	YGGCCR	2 cut(s)	553, 766
Eam1104I	CTCTTC	3 cut(s)	1003, 1446, 1608
EarI	CTCTTC	3 cut(s)	1003, 1446, 1608
Ecl136II	GAGCTC	2 cut(s)	151, 1534
Eco130I	CCWWGG	2 cut(s)	37, 722
Eco24I	GRGCYC	3 cut(s)	153, 570, 1536
Eco47I	GGWCC	1 cut(s)	830
Eco53kI	GAGCTC	2 cut(s)	151, 1534
Eco57I	CTGAAG	1 cut(s)	731
EcoICRI	GAGCTC	2 cut(s)	151, 1534
EcoRI	GAATTC	1 cut(s)	842
EcoRII	CCWGG	2 cut(s)	52, 294
EcoT14I	CCWWGG	2 cut(s)	37, 722
EcoT22I	ATGCAT	1 cut(s)	1692
EcoT38I	GRGCYC	3 cut(s)	153, 570, 1536
ErhI	CCWWGG	2 cut(s)	37, 722
FalI	AAGNNNNNCTT	2 cut(s)	193, 225
FaqI	GGGAC	2 cut(s)	652, 1233
FbaI	TGATCA	2 cut(s)	1326, 1366
FblI	GTMKAC	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	486, 591, 594
FokI	GGATG	4 cut(s)	106, 155, 266, 1460
FriOI	GRGCYC	3 cut(s)	153, 570, 1536
Fsp4HI	GCNGC	3 cut(s)	486, 591, 594
FspBI	CTAG	4 cut(s)	173, 515, 597, 954
GluI	GCNGC	3 cut(s)	486, 591, 594
GsaI	CCCAGC	1 cut(s)	1403
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	5 cut(s)	36, 555, 768, 1293, 1542
HapII	CCGG	1 cut(s)	698
HinfI	GANTC	9 cut(s)	79, 233, 705, 858, 958, 994, 1572, 1620, 1645
HpaII	CCGG	1 cut(s)	698
HphI	GGTGA	1 cut(s)	727
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	1 cut(s)	750
Hpy188III	TCNNGA	8 cut(s)	265, 1141, 1202, 1268, 1279, 1346, 1370, 1394
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	7 cut(s)	129, 347, 454, 880, 1345, 1349, 1659
HpyCH4III	ACNGT	2 cut(s)	643, 1342
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 602, 910
HpyF3I	CTNAG	2 cut(s)	571, 988
Ksp22I	TGATCA	2 cut(s)	1326, 1366
Kzo9I	GATC	7 cut(s)	181, 690, 1264, 1317, 1326, 1366, 1390
LguI	GCTCTTC	1 cut(s)	1003
LmnI	GCTCC	3 cut(s)	1090, 1531, 1595
Lsp1109I	GCAGC	2 cut(s)	497, 605
LweI	GCATC	2 cut(s)	208, 1677
MaeI	CTAG	4 cut(s)	173, 515, 597, 954
MaeIII	GTNAC	2 cut(s)	446, 1336
MalI	GATC	7 cut(s)	183, 692, 1266, 1319, 1328, 1368, 1392
MbiI	CCGCTC	1 cut(s)	932
MboI	GATC	7 cut(s)	181, 690, 1264, 1317, 1326, 1366, 1390
MfeI	CAATTG	2 cut(s)	1016, 1191
MflI	RGATCY	1 cut(s)	690
MhlI	GDGCHC	5 cut(s)	153, 500, 570, 1015, 1536
MlsI	TGGCCA	2 cut(s)	555, 768
MluNI	TGGCCA	2 cut(s)	555, 768
MlyI	GAGTC	3 cut(s)	699, 952, 1003
MnlI	CCTC	8 cut(s)	172, 272, 408, 843, 1219, 1438, 1522, 1609
Mox20I	TGGCCA	2 cut(s)	555, 768
Mph1103I	ATGCAT	1 cut(s)	1692
MscI	TGGCCA	2 cut(s)	555, 768
MseI	TTAA	7 cut(s)	168, 194, 612, 627, 984, 1311, 1662
MslI	CAYNNNNRTG	1 cut(s)	774
Msp20I	TGGCCA	2 cut(s)	555, 768
MspI	CCGG	1 cut(s)	698
MspR9I	CCNGG	2 cut(s)	54, 296
MunI	CAATTG	2 cut(s)	1016, 1191
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	2 cut(s)	54, 296
MwoI	GCNNNNNNNGC	3 cut(s)	227, 602, 910
NdeII	GATC	7 cut(s)	181, 690, 1264, 1317, 1326, 1366, 1390
NlaIV	GGNNCC	2 cut(s)	260, 1092
NsiI	ATGCAT	1 cut(s)	1692
NspI	RCATGY	2 cut(s)	363, 1694
PaeI	GCATGC	1 cut(s)	1694
PagI	TCATGA	1 cut(s)	1140
PciI	ACATGT	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	1003
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	6 cut(s)	79, 233, 858, 1572, 1620, 1645
PfoI	TCCNGGA	1 cut(s)	52
PinAI	ACCGGT	1 cut(s)	697
PkrI	GCNGC	3 cut(s)	487, 592, 595
PleI	GAGTC	3 cut(s)	699, 952, 1002
PpsI	GAGTC	3 cut(s)	699, 952, 1002
PscI	ACATGT	1 cut(s)	359
Psp124BI	GAGCTC	2 cut(s)	153, 1536
Psp6I	CCWGG	2 cut(s)	52, 294
PspFI	CCCAGC	1 cut(s)	1399
PspGI	CCWGG	2 cut(s)	52, 294
PspN4I	GGNNCC	2 cut(s)	260, 1092
PspPI	GGNCC	4 cut(s)	34, 830, 1292, 1540
PstI	CTGCAG	1 cut(s)	790
PsuI	RGATCY	1 cut(s)	690
RsaI	GTAC	3 cut(s)	115, 370, 804
RsaNI	GTAC	3 cut(s)	114, 369, 803
RseI	CAYNNNNRTG	1 cut(s)	774
SacI	GAGCTC	2 cut(s)	153, 1536
SapI	GCTCTTC	1 cut(s)	1003
SaqAI	TTAA	7 cut(s)	168, 194, 612, 627, 984, 1311, 1662
SatI	GCNGC	3 cut(s)	486, 591, 594
Sau3AI	GATC	7 cut(s)	181, 690, 1264, 1317, 1326, 1366, 1390
Sau96I	GGNCC	4 cut(s)	34, 830, 1292, 1540
ScaI	AGTACT	1 cut(s)	115
SchI	GAGTC	3 cut(s)	699, 952, 1003
ScrFI	CCNGG	2 cut(s)	54, 296
SduI	GDGCHC	5 cut(s)	153, 500, 570, 1015, 1536
SfaNI	GCATC	2 cut(s)	208, 1677
SfcI	CTRYAG	1 cut(s)	786
SinI	GGWCC	1 cut(s)	830
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	4 cut(s)	1223, 1346, 1394, 1535
SmoI	CTYRAG	4 cut(s)	1223, 1346, 1394, 1535
SpeI	ACTAGT	1 cut(s)	172
SphI	GCATGC	1 cut(s)	1694
SsiI	CCGC	4 cut(s)	375, 590, 930, 1409
SspMI	CTAG	4 cut(s)	173, 515, 597, 954
SstI	GAGCTC	2 cut(s)	153, 1536
StyD4I	CCNGG	2 cut(s)	52, 294
StyI	CCWWGG	2 cut(s)	37, 722
TaaI	ACNGT	2 cut(s)	643, 1342
TaqI	TCGA	2 cut(s)	1278, 1636
TatI	WGTACW	2 cut(s)	113, 802
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	6 cut(s)	79, 233, 858, 1572, 1620, 1645
Tru1I	TTAA	7 cut(s)	168, 194, 612, 627, 984, 1311, 1662
Tru9I	TTAA	7 cut(s)	168, 194, 612, 627, 984, 1311, 1662
TscAI	CASTG	2 cut(s)	658, 996
TseI	GCWGC	2 cut(s)	485, 593
TspRI	CASTG	2 cut(s)	658, 996
VpaK11BI	GGWCC	1 cut(s)	830
XapI	RAATTY	8 cut(s)	27, 346, 823, 842, 1044, 1096, 1210, 1509
XceI	RCATGY	2 cut(s)	363, 1694
XmiI	GTMKAC	1 cut(s)	163
XspI	CTAG	4 cut(s)	173, 515, 597, 954
ZrmI	AGTACT	1 cut(s)	115
Zsp2I	ATGCAT	1 cut(s)	1692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.